Rroxscaffold_5G00341310

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0017978
Physical Location & Seq
Forward (+)
9839538 .. 9845871
6334 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00341310.1

Sequence Viewer

Length: 492 bp
ATGAAGAGGCGAGCTTGCTGGTGCCGGATTCCGTTGTGGGTCGGCCGGAGAAGGAAGAAATCGGAGGAGGAAGAATCGACCGAAGACGAGAAAATGATCGGGGAAGAAGAGAGAGAAAAACTGGCTCTAAAGTGTTCATCTTCCTCTAGATTGGCCACCGACAGTCCACTTTCTTCCTCTCGCAACTCAAAACCATCTGAAGGTCTTATTCGATCATCAAGGCCGCCACCAACAAGCTCAAGGGAAGCTGGTCTTCATGCCTTCACCGGCTATCCGAACTTCGCAAGCAATGAACAGAGCGAAACGAAGAAGCGAGGTTTGGAAGTTTTCTTCGGCAAATTAAGACGCTTCTCCAACAAGGCCGAGGCCGTCGTTCCAATGGTGATTGGAGCTCTCACGGCGCACAGGACCTGCAAGGTTCAGCAAGCGAAGTTCTTGAGTGGAGCTAGCGATCGAGTTGAGCTTGCACAAGTGAGCTACTTCGATGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

18.29

Weight (kDa)

9.65

Isoelectric Point (pI)

77.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 419
AccB1I GGYRCC 1 cut(s) 21
AciI CCGC 1 cut(s) 224
AcoI YGGCCR 2 cut(s) 43, 153
AcuI CTGAAG 1 cut(s) 219
AfiI CCNNNNNNNGG 1 cut(s) 200
AjuI GAANNNNNNNTTGG 2 cut(s) 302, 334
AluBI AGCT 7 cut(s) 14, 237, 248, 392, 446, 463, 477
AluI AGCT 7 cut(s) 14, 237, 248, 392, 446, 463, 477
Alw21I GWGCWC 1 cut(s) 394
AlwNI CAGNNNCTG 1 cut(s) 411
AoxI GGCC 5 cut(s) 43, 153, 221, 360, 366
AspLEI GCGC 1 cut(s) 403
AspS9I GGNCC 1 cut(s) 408
AsuHPI GGTGA 2 cut(s) 256, 394
AsuNHI GCTAGC 1 cut(s) 446
AvaII GGWCC 1 cut(s) 408
BalI TGGCCA 1 cut(s) 155
BanI GGYRCC 1 cut(s) 21
BanII GRGCYC 1 cut(s) 394
BbsI GAAGAC 2 cut(s) 90, 245
Bbv12I GWGCWC 1 cut(s) 394
BccI CCATC 1 cut(s) 202
BceAI ACGGC 2 cut(s) 353, 414
BfaI CTAG 2 cut(s) 147, 447
BfuAI ACCTGC 1 cut(s) 419
BisI GCNGC 1 cut(s) 224
BlsI GCNGC 1 cut(s) 225
Bme18I GGWCC 1 cut(s) 408
BmgT120I GGNCC 1 cut(s) 408
BmiI GGNNCC 1 cut(s) 23
BmsI GCATC 1 cut(s) 475
BmtI GCTAGC 1 cut(s) 450
BpiI GAAGAC 2 cut(s) 90, 245
BpuEI CTTGAG 2 cut(s) 223, 457
BsaJI CCNNGG 1 cut(s) 363
Bsc4I CCNNNNNNNGG 1 cut(s) 200
Bse118I RCCGGY 1 cut(s) 266
Bse1I ACTGG 1 cut(s) 126
Bse3DI GCAATG 1 cut(s) 295
BseDI CCNNGG 1 cut(s) 363
BseLI CCNNNNNNNGG 1 cut(s) 200
BseMI GCAATG 1 cut(s) 295
BseNI ACTGG 1 cut(s) 126
BseRI GAGGAG 1 cut(s) 80
BseX3I CGGCCG 1 cut(s) 43
Bsh1285I CGRYCG 3 cut(s) 46, 81, 454
BshFI GGCC 5 cut(s) 45, 155, 223, 362, 368
BshNI GGYRCC 1 cut(s) 21
BsiEI CGRYCG 3 cut(s) 46, 81, 454
BsiHKAI GWGCWC 1 cut(s) 394
BsiSI CCGG 3 cut(s) 25, 46, 267
BslI CCNNNNNNNGG 1 cut(s) 200
BsnI GGCC 5 cut(s) 45, 155, 223, 362, 368
Bsp1286I GDGCHC 1 cut(s) 394
Bsp143I GATC 3 cut(s) 96, 212, 451
BspACI CCGC 1 cut(s) 224
BspANI GGCC 5 cut(s) 45, 155, 223, 362, 368
BspLI GGNNCC 1 cut(s) 23
BspMI ACCTGC 1 cut(s) 419
BspOI GCTAGC 1 cut(s) 450
BspT107I GGYRCC 1 cut(s) 21
BsrDI GCAATG 1 cut(s) 295
BsrFI RCCGGY 1 cut(s) 266
BsrI ACTGG 1 cut(s) 126
BssAI RCCGGY 1 cut(s) 266
BssECI CCNNGG 1 cut(s) 363
BssMI GATC 3 cut(s) 96, 212, 451
Bst4CI ACNGT 1 cut(s) 164
Bst6I CTCTTC 1 cut(s) 102
BstC8I GCNNGC 6 cut(s) 12, 16, 286, 426, 448, 465
BstHHI GCGC 1 cut(s) 403
BstKTI GATC 3 cut(s) 99, 215, 454
BstMBI GATC 3 cut(s) 96, 212, 451
BstMCI CGRYCG 3 cut(s) 46, 81, 454
BstMWI GCNNNNNNNGC 1 cut(s) 398
BstV2I GAAGAC 2 cut(s) 90, 245
BstZI CGGCCG 1 cut(s) 43
BsuRI GGCC 5 cut(s) 45, 155, 223, 362, 368
BveI ACCTGC 1 cut(s) 419
Cac8I GCNNGC 6 cut(s) 12, 16, 286, 426, 448, 465
CaiI CAGNNNCTG 1 cut(s) 411
CfoI GCGC 1 cut(s) 403
Cfr10I RCCGGY 1 cut(s) 266
Cfr13I GGNCC 1 cut(s) 408
CseI GACGC 1 cut(s) 354
CviAII CATG 1 cut(s) 257
DpnI GATC 3 cut(s) 98, 214, 453
DpnII GATC 3 cut(s) 96, 212, 451
EaeI YGGCCR 2 cut(s) 43, 153
EagI CGGCCG 1 cut(s) 43
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
Ecl136II GAGCTC 1 cut(s) 392
EclXI CGGCCG 1 cut(s) 43
Eco24I GRGCYC 1 cut(s) 394
Eco47I GGWCC 1 cut(s) 408
Eco52I CGGCCG 1 cut(s) 43
Eco53kI GAGCTC 1 cut(s) 392
Eco57I CTGAAG 1 cut(s) 219
EcoICRI GAGCTC 1 cut(s) 392
EcoO109I RGGNCCY 1 cut(s) 408
EcoT38I GRGCYC 1 cut(s) 394
FaeI CATG 1 cut(s) 260
FaiI YATR 1 cut(s) 258
FalI AAGNNNNNCTT 2 cut(s) 237, 269
FatI CATG 1 cut(s) 256
Fnu4HI GCNGC 1 cut(s) 224
FriOI GRGCYC 1 cut(s) 394
Fsp4HI GCNGC 1 cut(s) 224
FspBI CTAG 2 cut(s) 147, 447
GlaI GCGC 1 cut(s) 402
GluI GCNGC 1 cut(s) 224
HaeIII GGCC 5 cut(s) 45, 155, 223, 362, 368
HapII CCGG 3 cut(s) 25, 46, 267
HgaI GACGC 1 cut(s) 354
HhaI GCGC 1 cut(s) 403
Hin1II CATG 1 cut(s) 260
Hin6I GCGC 1 cut(s) 401
HinP1I GCGC 1 cut(s) 401
HinfI GANTC 2 cut(s) 28, 74
HpaII CCGG 3 cut(s) 25, 46, 267
HphI GGTGA 2 cut(s) 256, 394
Hpy166II GTNNAC 1 cut(s) 167
Hpy188I TCNGA 3 cut(s) 64, 199, 276
Hpy188III TCNNGA 2 cut(s) 147, 436
Hpy8I GTNNAC 1 cut(s) 167
Hpy99I CGWCG 1 cut(s) 374
HpyAV CCTTC 3 cut(s) 45, 194, 271
HpyCH4III ACNGT 1 cut(s) 164
HpyCH4V TGCA 2 cut(s) 414, 467
HpyF10VI GCNNNNNNNGC 1 cut(s) 398
Hsp92II CATG 1 cut(s) 260
HspAI GCGC 1 cut(s) 401
Kzo9I GATC 3 cut(s) 96, 212, 451
LmnI GCTCC 2 cut(s) 389, 443
LpnPI CCDG 8 cut(s) 4, 38, 59, 107, 234, 280, 391, 424
LweI GCATC 1 cut(s) 475
MaeI CTAG 2 cut(s) 147, 447
MalI GATC 3 cut(s) 98, 214, 453
MboI GATC 3 cut(s) 96, 212, 451
MhlI GDGCHC 1 cut(s) 394
MlsI TGGCCA 1 cut(s) 155
MluCI AATT 1 cut(s) 338
MluNI TGGCCA 1 cut(s) 155
MmeI TCCRAC 1 cut(s) 378
MnlI CCTC 6 cut(s) 58, 61, 154, 187, 308, 358
Mox20I TGGCCA 1 cut(s) 155
MscI TGGCCA 1 cut(s) 155
MseI TTAA 1 cut(s) 341
Msp20I TGGCCA 1 cut(s) 155
MspI CCGG 3 cut(s) 25, 46, 267
MwoI GCNNNNNNNGC 1 cut(s) 398
NdeII GATC 3 cut(s) 96, 212, 451
NheI GCTAGC 1 cut(s) 446
NlaIII CATG 1 cut(s) 260
NlaIV GGNNCC 1 cut(s) 23
NmeAIII GCCGAG 1 cut(s) 388
PfeI GAWTC 2 cut(s) 28, 74
PkrI GCNGC 1 cut(s) 225
Ple19I CGATCG 1 cut(s) 454
PpuMI RGGWCCY 1 cut(s) 408
Psp124BI GAGCTC 1 cut(s) 394
Psp5II RGGWCCY 1 cut(s) 408
PspN4I GGNNCC 1 cut(s) 23
PspPI GGNCC 1 cut(s) 408
PspPPI RGGWCCY 1 cut(s) 408
PstNI CAGNNNCTG 1 cut(s) 411
PvuI CGATCG 1 cut(s) 454
SacI GAGCTC 1 cut(s) 394
SaqAI TTAA 1 cut(s) 341
SatI GCNGC 1 cut(s) 224
Sau3AI GATC 3 cut(s) 96, 212, 451
Sau96I GGNCC 1 cut(s) 408
SduI GDGCHC 1 cut(s) 394
SfaNI GCATC 1 cut(s) 475
SinI GGWCC 1 cut(s) 408
SmlI CTYRAG 2 cut(s) 238, 436
SmoI CTYRAG 2 cut(s) 238, 436
Sse9I AATT 1 cut(s) 338
SsiI CCGC 1 cut(s) 224
SspMI CTAG 2 cut(s) 147, 447
SstI GAGCTC 1 cut(s) 394
TaaI ACNGT 1 cut(s) 164
TaqI TCGA 4 cut(s) 77, 211, 454, 483
TaqII GACCGA 1 cut(s) 95
TasI AATT 1 cut(s) 338
TauI GCSGC 1 cut(s) 226
TfiI GAWTC 2 cut(s) 28, 74
Tru1I TTAA 1 cut(s) 341
Tru9I TTAA 1 cut(s) 341
TspDTI ATGAA 4 cut(s) 17, 126, 245, 306
TspGWI ACGGA 1 cut(s) 21
VpaK11BI GGWCC 1 cut(s) 408
XbaI TCTAGA 1 cut(s) 146
XspI CTAG 2 cut(s) 147, 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.