Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0017978

Physical Location & Seq

Genomic Coordinates Reverse (-)

63014317 .. 63020608

Gene Structure 6292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00383400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGCTTGATCTTAGTTGGAGTCGGTACATTAAGAGAATTCTATCCACTTTGATATCAAGGTTGTCTAGTTTGGAAGAGCTATACATGCAAGATAGTTTTCAGAATCGGGAGAGTAAGGTTGAGCGAGAAGGAGAAGTAACTTATGTTAGAATAATTGATGATTTCATTAGCTTGTCATACTTGAACGTCTTGGTGGTTGACATTGTCAATGCAAAGTGCTTGCCCAAGAATGTTAGCTTTAAATCCCAATTAGGTAATGTGTCGGTGGATTACCACATGTGTCTCTCGGGCAATCTAAAGTCTTTGCTGGTGTACAATTGTCTTATTCGATCATCAAGGCCGCCACCAACAAGCTCAAGGGAAGCTGGTCTCCATGCCTTCGCCGGCGATCCGAACTTCGCAAGCGGTGAAACGAGCGAAACAAAGAAGCAGTTCGGAAGTTTTCTTCTAGCGAGTAAGATGCTTCTCCAACAAGGCCGAGGCTGTAGTTCCAATGGTGATTGGAGCTCTCACGCGCACGGACCTGCAAGGTTCGGCAAGCGAAGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

183

Amino Acids

20.42

Weight (kDa)

9.1

Isoelectric Point (pI)

41.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017978)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05722
rosa_multiflora	Rmu_sc0003012.1_g000003
rosa_roxburghii	Rroxscaffold_2G00076990 Rroxscaffold_2G00101150 Rroxscaffold_2G00101160 Rroxscaffold_3G00238020 Rroxscaffold_5G00341310 Rroxscaffold_5G00341320 Rroxscaffold_5G00383400 Rroxscaffold_7G00209180
rosa_wichuraiana	Rw6G007470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	532
AccII	CGCG	1 cut(s)	515
AciI	CCGC	2 cut(s)	341, 405
AclWI	GGATC	1 cut(s)	383
AcsI	RAATTY	1 cut(s)	36
AfaI	GTAC	2 cut(s)	26, 314
AflIII	ACRYGT	1 cut(s)	276
AgsI	TTSAA	1 cut(s)	184
AluBI	AGCT	6 cut(s)	79, 171, 237, 354, 365, 507
AluI	AGCT	6 cut(s)	79, 171, 237, 354, 365, 507
Alw21I	GWGCWC	1 cut(s)	509
Alw26I	GTCTC	2 cut(s)	287, 374
AlwI	GGATC	1 cut(s)	383
Ama87I	CYCGRG	1 cut(s)	286
AoxI	GGCC	2 cut(s)	338, 475
ApoI	RAATTY	1 cut(s)	36
Asp700I	GAANNNNTTC	1 cut(s)	431
AspLEI	GCGC	1 cut(s)	517
AspS9I	GGNCC	1 cut(s)	521
AsuHPI	GGTGA	2 cut(s)	419, 509
AvaI	CYCGRG	1 cut(s)	286
AvaII	GGWCC	1 cut(s)	521
BanII	GRGCYC	1 cut(s)	509
Bbv12I	GWGCWC	1 cut(s)	509
BcgI	CGANNNNNNTGC	2 cut(s)	442, 476
BcoDI	GTCTC	2 cut(s)	287, 374
BfaI	CTAG	2 cut(s)	66, 449
BfmI	CTRYAG	1 cut(s)	484
BfuAI	ACCTGC	1 cut(s)	532
BisI	GCNGC	1 cut(s)	341
BlsI	GCNGC	1 cut(s)	342
Bme18I	GGWCC	1 cut(s)	521
BmeT110I	CYCGRG	1 cut(s)	286
BmgT120I	GGNCC	1 cut(s)	521
BmsI	GCATC	1 cut(s)	450
BpuEI	CTTGAG	1 cut(s)	340
BsaI	GGTCTC	1 cut(s)	374
BsaJI	CCNNGG	1 cut(s)	478
Bse118I	RCCGGY	1 cut(s)	383
BseDI	CCNNGG	1 cut(s)	478
Bsh1236I	CGCG	1 cut(s)	515
BshFI	GGCC	2 cut(s)	340, 477
BsiHKAI	GWGCWC	1 cut(s)	509
BsiHKCI	CYCGRG	1 cut(s)	286
BsiSI	CCGG	1 cut(s)	384
BsmAI	GTCTC	2 cut(s)	287, 374
BsnI	GGCC	2 cut(s)	340, 477
Bso31I	GGTCTC	1 cut(s)	374
BsoBI	CYCGRG	1 cut(s)	286
Bsp1286I	GDGCHC	1 cut(s)	509
Bsp1407I	TGTACA	1 cut(s)	312
Bsp143I	GATC	3 cut(s)	7, 329, 388
BspACI	CCGC	2 cut(s)	341, 405
BspANI	GGCC	2 cut(s)	340, 477
BspFNI	CGCG	1 cut(s)	515
BspMI	ACCTGC	1 cut(s)	532
BspPI	GGATC	1 cut(s)	383
BspQI	GCTCTTC	1 cut(s)	69
BspTNI	GGTCTC	1 cut(s)	374
BsrFI	RCCGGY	1 cut(s)	383
BsrGI	TGTACA	1 cut(s)	312
BssAI	RCCGGY	1 cut(s)	383
BssECI	CCNNGG	1 cut(s)	478
BssMI	GATC	3 cut(s)	7, 329, 388
Bst6I	CTCTTC	1 cut(s)	69
BstAUI	TGTACA	1 cut(s)	312
BstC8I	GCNNGC	4 cut(s)	221, 385, 403, 539
BstDEI	CTNAG	1 cut(s)	11
BstFNI	CGCG	1 cut(s)	515
BstHHI	GCGC	1 cut(s)	517
BstKTI	GATC	3 cut(s)	10, 332, 391
BstMAI	GTCTC	2 cut(s)	287, 374
BstMBI	GATC	3 cut(s)	7, 329, 388
BstMWI	GCNNNNNNNGC	1 cut(s)	85
BstNSI	RCATGY	2 cut(s)	88, 280
BstSFI	CTRYAG	1 cut(s)	484
BstUI	CGCG	1 cut(s)	515
BsuRI	GGCC	2 cut(s)	340, 477
BveI	ACCTGC	1 cut(s)	532
Cac8I	GCNNGC	4 cut(s)	221, 385, 403, 539
CfoI	GCGC	1 cut(s)	517
Cfr10I	RCCGGY	1 cut(s)	383
Cfr13I	GGNCC	1 cut(s)	521
Csp6I	GTAC	2 cut(s)	25, 313
CviAII	CATG	3 cut(s)	85, 277, 374
CviJI	RGCY	9 cut(s)	79, 171, 237, 340, 354, 365, 477, 483, 507
CviKI_1	RGCY	9 cut(s)	79, 171, 237, 340, 354, 365, 477, 483, 507
CviQI	GTAC	2 cut(s)	25, 313
DdeI	CTNAG	1 cut(s)	11
DpnI	GATC	3 cut(s)	9, 331, 390
DpnII	GATC	3 cut(s)	7, 329, 388
DraI	TTTAAA	1 cut(s)	241
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Ecl136II	GAGCTC	1 cut(s)	507
Eco24I	GRGCYC	1 cut(s)	509
Eco31I	GGTCTC	1 cut(s)	374
Eco32I	GATATC	1 cut(s)	54
Eco47I	GGWCC	1 cut(s)	521
Eco53kI	GAGCTC	1 cut(s)	507
Eco88I	CYCGRG	1 cut(s)	286
EcoICRI	GAGCTC	1 cut(s)	507
EcoRI	GAATTC	1 cut(s)	36
EcoRV	GATATC	1 cut(s)	54
EcoT38I	GRGCYC	1 cut(s)	509
FaeI	CATG	3 cut(s)	88, 280, 377
FaiI	YATR	6 cut(s)	82, 86, 144, 178, 278, 375
FatI	CATG	3 cut(s)	84, 276, 373
Fnu4HI	GCNGC	1 cut(s)	341
FriOI	GRGCYC	1 cut(s)	509
Fsp4HI	GCNGC	1 cut(s)	341
FspBI	CTAG	2 cut(s)	66, 449
GlaI	GCGC	1 cut(s)	516
GluI	GCNGC	1 cut(s)	341
HaeIII	GGCC	2 cut(s)	340, 477
HapII	CCGG	1 cut(s)	384
HhaI	GCGC	1 cut(s)	517
Hin1II	CATG	3 cut(s)	88, 280, 377
Hin6I	GCGC	1 cut(s)	515
HinP1I	GCGC	1 cut(s)	515
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	2 cut(s)	19, 103
HpaII	CCGG	1 cut(s)	384
HphI	GGTGA	2 cut(s)	419, 509
Hpy166II	GTNNAC	2 cut(s)	199, 313
Hpy188I	TCNGA	3 cut(s)	102, 393, 437
Hpy188III	TCNNGA	2 cut(s)	107, 549
Hpy8I	GTNNAC	2 cut(s)	199, 313
HpyAV	CCTTC	2 cut(s)	122, 388
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	3 cut(s)	88, 212, 527
HpyF10VI	GCNNNNNNNGC	1 cut(s)	85
HpyF3I	CTNAG	1 cut(s)	11
HpySE526I	ACGT	1 cut(s)	186
Hsp92II	CATG	3 cut(s)	88, 280, 377
HspAI	GCGC	1 cut(s)	515
KroI	GCCGGC	1 cut(s)	383
KroNI	GCCGGC	1 cut(s)	385
Kzo9I	GATC	3 cut(s)	7, 329, 388
LguI	GCTCTTC	1 cut(s)	69
LmnI	GCTCC	1 cut(s)	504
LpnPI	CCDG	4 cut(s)	293, 351, 397, 537
LweI	GCATC	1 cut(s)	450
MaeI	CTAG	2 cut(s)	66, 449
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	3 cut(s)	9, 331, 390
MboI	GATC	3 cut(s)	7, 329, 388
MboII	GAAGA	2 cut(s)	86, 437
MfeI	CAATTG	1 cut(s)	316
MhlI	GDGCHC	1 cut(s)	509
MluCI	AATT	4 cut(s)	36, 153, 248, 316
MlyI	GAGTC	1 cut(s)	28
MmeI	TCCRAC	1 cut(s)	493
MnlI	CCTC	1 cut(s)	473
MreI	CGCCGGCG	1 cut(s)	383
MroNI	GCCGGC	1 cut(s)	383
MroXI	GAANNNNTTC	1 cut(s)	431
MseI	TTAA	2 cut(s)	30, 240
MspI	CCGG	1 cut(s)	384
MunI	CAATTG	1 cut(s)	316
MvnI	CGCG	1 cut(s)	515
MwoI	GCNNNNNNNGC	1 cut(s)	85
NaeI	GCCGGC	1 cut(s)	385
NdeII	GATC	3 cut(s)	7, 329, 388
NgoMIV	GCCGGC	1 cut(s)	383
NlaIII	CATG	3 cut(s)	88, 280, 377
NmeAIII	GCCGAG	1 cut(s)	503
NspI	RCATGY	2 cut(s)	88, 280
PciI	ACATGT	1 cut(s)	276
PciSI	GCTCTTC	1 cut(s)	69
PdiI	GCCGGC	1 cut(s)	385
PdmI	GAANNNNTTC	1 cut(s)	431
PfeI	GAWTC	1 cut(s)	103
PflFI	GACNNNGTC	1 cut(s)	203
PkrI	GCNGC	1 cut(s)	342
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
PscI	ACATGT	1 cut(s)	276
Psp124BI	GAGCTC	1 cut(s)	509
PspPI	GGNCC	1 cut(s)	521
PsyI	GACNNNGTC	1 cut(s)	203
RsaI	GTAC	2 cut(s)	26, 314
RsaNI	GTAC	2 cut(s)	25, 313
SacI	GAGCTC	1 cut(s)	509
SapI	GCTCTTC	1 cut(s)	69
SaqAI	TTAA	2 cut(s)	30, 240
SatI	GCNGC	1 cut(s)	341
Sau3AI	GATC	3 cut(s)	7, 329, 388
Sau96I	GGNCC	1 cut(s)	521
SchI	GAGTC	1 cut(s)	28
SduI	GDGCHC	1 cut(s)	509
SfaNI	GCATC	1 cut(s)	450
SfcI	CTRYAG	1 cut(s)	484
SgrAI	CRCCGGYG	1 cut(s)	383
SinI	GGWCC	1 cut(s)	521
SmlI	CTYRAG	1 cut(s)	355
SmoI	CTYRAG	1 cut(s)	355
Sse9I	AATT	4 cut(s)	36, 153, 248, 316
SsiI	CCGC	2 cut(s)	341, 405
SspMI	CTAG	2 cut(s)	66, 449
SstI	GAGCTC	1 cut(s)	509
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	1 cut(s)	328
TasI	AATT	4 cut(s)	36, 153, 248, 316
TatI	WGTACW	1 cut(s)	312
TauI	GCSGC	1 cut(s)	343
TfiI	GAWTC	1 cut(s)	103
Tru1I	TTAA	2 cut(s)	30, 240
Tru9I	TTAA	2 cut(s)	30, 240
TspDTI	ATGAA	1 cut(s)	154
TspGWI	ACGGA	1 cut(s)	534
Tth111I	GACNNNGTC	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	521
XapI	RAATTY	1 cut(s)	36
XceI	RCATGY	2 cut(s)	88, 280
XmnI	GAANNNNTTC	1 cut(s)	431
XspI	CTAG	2 cut(s)	66, 449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.