Rmu_sc0003094.1_g000005

phosphatidylinositol-3-phosphate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003094.1
OG0005768
Physical Location & Seq
Reverse (-)
17001 .. 40597
23597 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 7821 bp
atggaggacaaagaaacccaaatcctttcccgcctggccgcaaaccacctcttcctcggccaattcgagcccctccgagccatcctcatcgctctccgcgcccgaaaccccgccctcgccctcgccgtcctccagaccatagtcgcccactccggtcgactcgacaatgttctatggtcgccgtcctgcccttccccgccgatcctcacttacctctccaccgtcgagctcttgcaattcgacgacgcctcctccgcctggggattcgatcccgaaacgctgcggctgcgcgccgagtttctgctgctggttcagagcttgatcgatagggtttcggagagcctgcggaggagtttcgatttagacagcatagagaaggagaaggagaggagtgatggtttcgaagagcgggccgagttgatggatgatacgatgagcaaggagttgagagacggcggtggtgaattggagagctgtgttagggttttggatagagtattggagttgggggtgaggaggttgaagccggaatcgttactagtagggaatgctgatcaggccgtggaaattgaggaaggcgagttcatgtgcttgaggagtgtggtgtgggagtatgctgatgttttcgatgccttgtgttggaatgtacagaggcaactgaggggttgggagggagatgatgcttcgggattggccataacagtgaggagggatgatatgcccaaagaggaggatgtgaaggctcttcgtttgatacagaggagtgtacagttagctcacttggatgctatgagagagtgcatcaaggatggtgaagtggatggaggggtttcgcggattcggtttcttcatcttgattatggagtggaggagactgagtatcgcattgctttgcaacatctcctcaagatggtgtcctcaggaaaggagggatatggagattcctggttagacatgcgagaaatattactgcagatttatagtgcagctcttgcttcaaactctgggcatcttgttcaaatgatacaagttcttcaggatgagttgctctcaaaagagattgagatttatagatctcttgataacaatcaaattccgccacctcttgaacgtcttcaaagatatcttgaagaattaagacctggcacagatgtaaatgataaaacttctcccttcaatagtgtagttgcattttgcatgagagacatgtaccattatgctcgtgtttctggtttacacctgcttgaatgtgtcatggagacagctttgtctgtggtgaagagggagcagcttcaagaagctagcaatattcttttattgttcccccgtcttcagcccctagtagccgccatgggttgggatttactgtctggcaaaactgcagcacgaaggaaattaatgcaactgctgtggaaaactaagtcgcaggttttacggctggaagaatcttccctttacagtaaccagtcagatgagatatcttgcgtggaatatctttgtgattctttatgttatcaactagatcttgcctcatttgtggcctgtgttaattctggtcaatcatggaattcaaaattatcactgacattgtctgcaaaagaccaaatagcatacaatggtgaagatgcccagttagacccttttgttgaaaacttcgtactggaaaggctttccgctcaaagtcctcttcgggatattgaacttatgcacatgcggtatgctctagattcagccgttcttgcacttggagtgatggaaaagagtatgaccgctgaaagtcatcaagttgcattttgctatttaaaagacctacagagccatttggaggctgtaaatactatcccccgcaagatcatgatcgtgaatgtcataatttcgctcttgcatatggatgatcagtctctcaatttgaatcattgtgcctcaccagggagttattctgaagcacactacacacgtgcttcagaacagatcaatctgactacatgtgaagggggaaataaattggttatatctttcacaggcaaactacttgagatattacatcactgtcttccttcaacgatagcggaccgtgatcatgctcttagtgatggtataaataggggtggaagacaagcagtggagtggagagtgtcaattgctaaacactttcttgaagagtgggaatggcggttgtcaattttgcagcgtctccttccattatctgaacgtcagtggaaatggaaggaagcattgacggtattacgtgctgcaccatctaagctacttaacctttgcatgcaaagggcaaagtatgacattggggaagaagcagtgcaccgattctcattgtctgcagaagatagagctacacttgaattagcagaatgggtagatagtgctgtagaagatgtagtctctcgtgctgctgatgatggaacttctacagtacatgatctggatttttcatcattacgctctcaattaggtcctttggctgcaattcttctttgtattgatgttgctgctacttcggcacggtctgcaaagatgtcccagcagcttttggatcaggctcaagttatgctgtctgagatatatccaggagtttctccaaagatgggctccacgtactgggatcagattcttgaagtgggagttatttctgttctaaaaagaatcctcaagcgtttacatgagttcttggatatggatgatcctctagcccttcaggccactctgtctggggagattttcatctcctcgccaaaggactcccatcgactgggacaacgggagcgtgttcttgatatgctacatcatatgattgaagatgctcacaaaggaaagcggcagtttcttagtggtaagctccataatcttgcaagagctgtggctgatgaagaatcagagctcaatttttctaaaggagaaggcccttctgttgaccaaaaggttctatccgattatgacaaggatggagttcttggactggggttaagagttgccaaacagataccttcaagttccacaattggagaaactagtgtgcagcctgttgtttatgatgtaaaggacagtgggaagagattgtttggtccattaagtaccaaacccatgacatatctttcacaatttattcttcacattgctgcaattggtgacatagttgatggcacagatacaactcatgatttcaactttttctccctcgtgtatgagtggcccaaggatcttttaacccgtcttgtctttgaccggggcagcactgatgcagctggtaaggtagctgagattatgtgtgcagattttgtgcatgaagtaatttcagcatgtgtacctcctgtttatcccccacgatctggccatggatgggcctgtattccagtcattcccaccttccctaagagcggttcggaaaataaagtattgtccccatctttcaaagaagctaagcctaattgttactcgcgctcttcatctttgcctggaatcccactgtaccctttgcagttagatatagtaaaacatttggtcaaactatccccagtgagggcagtcctggcatgtgtatttgggagtagcattttgtacaatggcagtaattcttctatatcgagctccttggatgatggacttctacaggcaccagatgttgaccgattgttttatgagtttgctcttgatcaatctgagaggttcccaactttaaaccgatggatacagatgcaaactaacctgcatcgagtttcagagtttgctgtaatggttaagcaaactgacgatggtggtgagactagaggtgaagcaagagctgctatcaagaggcttcgtgagcttgacagtgatactgagtcagaagttgatgacgttgttggtaatagtgtttcaacagctttaccagacctcgatagccaaggtggtactgctcttgattcatggcgtgattcttctaaatcggatgttgctgagtttgacacttcagttttcctttcttttgattgggaaaatgaagaaccttatgagaaagctgtacaaagattgatagatgatgaaaaacttatggatgctcttgctctttccgatcgctttctacgcaatggagcttcagatcaactacttcagctactcattgaacttggggaagagaaccagtcagtctctggacactctcagggttatggtggcaatagcatttggagcactagttggcagtattgcctgcggttgaaggataaacaagtggctgccagacttgctctcaagtgtatgcatagatgggaactggatgctgctttagacgtactcaccatgtgcagctgccacctgcctcaaagtgaccccattagggaggaggtcatgtataggagacaagctttgcagaggtacagccacattctaagtgcagatgaccattatagcagctggcaagaggttgaggcagagtgtaaggaagatcctgaggggttggcacttagattagctggaaaaggagctgtttctgctgccttagaagtggctgaaagcgcagggttatccattgatttgcgtagggaactgcagggccggcaacttgtgaagcttttgactgcagatcctctcaatgggggaggtccagcagaagcttcacgatttctttcttcattgcgcgactcagatgatgctctaccagttgccatgggtgcgatgcagcttttacctgatttgcggtcaaagcagcttcttgttcatttcttcctgaagcggagagaagggaatctttcagatgttgaggtttctcggcttaattcatgggccttggggcttcgtgttctggctgccttgccattgccatggcagcaaagatgttcttccttgcatgagcaccctcatttgatacttgaggctcttctgatgaggaaacaactacaatctgctgctttgattctcaaagaatttcctttgttgagagacaataatgcgcttattgcctatgctactaaagctattgcaatcagtattagcactccccctagagaacatcgagtatctgtttcggggacaagattaaagcagaaaacaagaacaggtgcacctgtgaagtcttctttcactagcagtctcagtaacttgcaaaaagaagctcgcagagctttctcttgggctccacgaaatagtggagacaggtccaccccgaaagatggttaccgtaagagaaagagttctggattgacaccctctgaaaaagtagcttgggaggccatggctggaatccaggaggatcgtgcttcaacatattctgttgatgggcaagaacggcttccttcaatttcaatatctgaagaatggatgctaactggtgatccattgaaggatgaagccgttcgtgcatctcaccgatatgagagtgctcctgacataacgcttttcaaggcactgctttctctatgctcagatgattctgtgtctgcaaaaactgcattggatttgtgcgtaactcagatgaagaatgtactgagttcccaacaattgccagagaatgcatctgtggaaaccattggccgagcatatcatgccacagagacgtttgtacaggggctactttatgctaaatcactgttgagaaagcttgtgggcggcagtgatttgtcgagtaattctgaaagaagtagggatgctgatgatgcatcttctgatgctggtagctctagtgtgggtagtcagtccacagatgagctatctgaagttctgttgcaggcagacacttggctaggacgtgctgagctgcttcagagccttctgggatcaggaattgctgcttctctagatgatattgcggataaagagtcatctgcctctcttcgtgataggctgattgtggaagaacggtacagcatggccgtatatacatgtaaaaagtgcaagattgatgtggttcctgtttggaatgcatggggacatgctttgattcggatggagcactatgcacaagctcgcgtgaagttcaagcaagctcttcagctgtacaaaggtgatcctgctcctgttattcttgagataatcaatacaattgaaggaggtccgccagttgatgtttcagctgttcgttccatgtatgaacatttggctaaaagtgcaccaacaatcttggatgattctctttctgctgattcatatctcaatgtgttatacatgccatccacatttcctcgttcagagagatccaggcgttctcaggaatctgcaaataacagctccgcatatatgtcagactttgaagatggaccacgcagcaacttagacagtgttcggtatgttgagtgtgtcaactatttacaagagtatgccaggcagcatttgctcaatttcatgttcaggcatggccactataatgacgcttgcgtgttgttctttcctcaaaatgctgttccccctcctcctcagccatcagtagcaggggtggcatcctcatcttcatcccctcaaagaccagatcctctaggaactgattatgggaccattgatgatttgtgtgatttatgtgttggttatggcgcaatgcatgttttagaagaggtgatctcagtaagaatgtcatctacaaccccacaagatgtggcagtgatccagcatacagctgcagcccttgctcgtatttgtgtctactgtgaaacacacaggcatttcaattatttatacaagtttcaggttattaaaaaggaccatgtcgctgctggactgtgctgcatccaactttttatgaactcttctttgcaagaggaagctataaaacatttggaaaattccaagatgcactttgatgaagcgctatcagcacggtacaaaggtggggattctactaagcttgtgacaaagggtgttagaggaaaaagtgcttctgaaaagctcactgaagaaggacttgtcaagttttctgctcgggtatcaattcaggttgaagttgtgagatcctataatgattcagatggaccccattggaaacattcacttttcggaaacccaaatgactccgaaacattcaggagaaggtgtaaaattgctgaatctcttgtggaaaagaacttcgatttggctttccaagtgatttatgaattcacccttccagctgtggatatatatgctggtgtagctgcatcacttgctgagagaaaaaaaggtagtcagctgacagaattttttagaaacattaaaggaaccattgatgacgatgattgggaccaggtcttgggagctgcaattaatgtatatgctaacaaacacaaagaacgccctgaccgtcttatagacatgttgaccagtagccacaggaaggttctggcttgtgtggtttgtggacgtctaaaaagtgcattccaaattgcttctcgtagcggaagtgtagctgatgtccaatatgtagctcatcaggcattgcatgcgaatgcgcttcctgtactcgatatgtgtaaacaatggttggctcaatcacgaggctttttcaacttttgggtgctaggtcctgccattttgtttcatattgtcagcactagcctgctgcgatatgctaaagctgcgcttgaagaatggaccgttgtttctacgctagccgcttctctagcttttcaagagcactcgtctgacggtggcccagcgtcactgacggcctttggtcgtggtgatgttgtggtgctgccggacgggcatttcatcccttttcgatcctctttggcggcgttgcacatcatggcagagttccggggacggtggttggaggttgtggaggcattgttggtatccagtaaacagccgggtgtattgggtgtcccatatctgatcggctcgggcctggtgggcatctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

2606

Amino Acids

289.8

Weight (kDa)

5.49

Isoelectric Point (pI)

51.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_ZFYVE26 PF25569 2362 - 2481 2.5e-32 ZFYVE26-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1248, 4317
AasI GACNNNNNNGTC 1 cut(s) 1267
AatII GACGTC 1 cut(s) 7321
Acc36I ACCTGC 4 cut(s) 1248, 1417, 3729, 4317
AccB1I GGYRCC 1 cut(s) 3628
AccB7I CCANNNNNTGG 5 cut(s) 1356, 2616, 2767, 3344, 7207
AccBSI CCGCTC 3 cut(s) 409, 1676, 3393
AccI GTMKAC 2 cut(s) 157, 6624
AccII CGCG 6 cut(s) 99, 291, 835, 3454, 4632, 5958
AcoI YGGCCR 7 cut(s) 36, 58, 693, 3346, 5521, 5859, 6343
AcsI RAATTY 6 cut(s) 1092, 1567, 4916, 6763, 7073, 7154
AcvI CACGTG 1 cut(s) 1958
AcyI GRCGYC 2 cut(s) 246, 7318
AdeI CACNNNGTG 1 cut(s) 4296
AfeI AGCGCT 1 cut(s) 6789
AflIII ACRYGT 5 cut(s) 1206, 1955, 1985, 5870, 7269
AhlI ACTAGT 3 cut(s) 538, 3026, 4187
AjiI CACGTC 1 cut(s) 5738
AjuI GAANNNNNNNTTGG 2 cut(s) 7034, 7066
AloI GAACNNNNNNTCC 2 cut(s) 566, 598
Alw44I GTGCAC 3 cut(s) 2318, 5052, 6096
AlwNI CAGNNNCTG 1 cut(s) 4145
Ama87I CYCGRG 2 cut(s) 6900, 7801
Aor51HI AGCGCT 1 cut(s) 6789
ApaLI GTGCAC 3 cut(s) 2318, 5052, 6096
ApoI RAATTY 6 cut(s) 1092, 1567, 4916, 6763, 7073, 7154
AseI ATTAAT 2 cut(s) 1397, 7221
Asp700I GAANNNNTTC 4 cut(s) 1113, 5182, 5280, 5343
AsuC2I CCSGG 3 cut(s) 3242, 7718, 7770
AsuII TTCGAA 1 cut(s) 402
AsuNHI GCTAGC 2 cut(s) 1301, 7564
AvaI CYCGRG 2 cut(s) 6900, 7801
AxyI CCTNAGG 2 cut(s) 919, 4443
BaeGI GKGCMC 3 cut(s) 2322, 5056, 6100
BaeI ACNNNNGTAYC 2 cut(s) 6793, 6826
BalI TGGCCA 3 cut(s) 695, 3348, 6345
BanI GGYRCC 1 cut(s) 3628
BanII GRGCYC 6 cut(s) 72, 231, 2609, 2898, 3605, 5128
BauI CACGAG 4 cut(s) 1221, 2403, 3194, 7449
BbrPI CACGTG 1 cut(s) 1958
BbsI GAAGAC 5 cut(s) 1106, 1322, 2045, 2119, 5058
BbvCI CCTCAGC 1 cut(s) 6402
BciVI GTATCC 2 cut(s) 3696, 7765
BclI TGATCA 4 cut(s) 553, 1894, 2077, 3667
BcnI CCSGG 3 cut(s) 3242, 7718, 7770
BcuI ACTAGT 3 cut(s) 538, 3026, 4187
BfoI RGCGCY 1 cut(s) 6791
BfuAI ACCTGC 4 cut(s) 1248, 1417, 3729, 4317
BfuI GTATCC 2 cut(s) 3696, 7765
BglI GCCNNNNNGGC 3 cut(s) 2714, 7660, 7812
BglII AGATCT 2 cut(s) 1073, 1522
BlpI GCTNAGC 2 cut(s) 3435, 5742
BmeT110I CYCGRG 2 cut(s) 6900, 7801
BmgBI CACGTC 1 cut(s) 5738
BmiI GGNNCC 9 cut(s) 2608, 3630, 3683, 5127, 5898, 6478, 6952, 7177, 7199
BmrI ACTGGG 5 cut(s) 1624, 2626, 2777, 2984, 3524
BmtI GCTAGC 2 cut(s) 1305, 7568
BmuI ACTGGG 5 cut(s) 1624, 2626, 2777, 2984, 3524
BoxI GACNNNNGTC 1 cut(s) 140
BpiI GAAGAC 5 cut(s) 1106, 1322, 2045, 2119, 5058
BplI GAGNNNNNCTC 6 cut(s) 69, 101, 1034, 1066, 6527, 6559
BpmI CTGGAG 1 cut(s) 116
Bpu10I CCTNAGC 1 cut(s) 6402
Bpu1102I GCTNAGC 2 cut(s) 3435, 5742
Bpu14I TTCGAA 1 cut(s) 402
BpuEI CTTGAG 8 cut(s) 613, 890, 2054, 2544, 2651, 4229, 4883, 6035
BpuMI CCSGG 3 cut(s) 3242, 7718, 7770
Bsa29I ATCGAT 1 cut(s) 324
BsaAI YACGTR 3 cut(s) 1958, 2249, 2613
BsaBI GATNNNNATC 4 cut(s) 1086, 1856, 2738, 6135
BsaHI GRCGYC 2 cut(s) 246, 7318
BsaWI WCCGGW 1 cut(s) 152
Bse118I RCCGGY 1 cut(s) 4548
Bse21I CCTNAGG 2 cut(s) 919, 4443
Bse3DI GCAATG 7 cut(s) 885, 3129, 4087, 4625, 4808, 6525, 7391
Bse8I GATNNNNATC 4 cut(s) 1086, 1856, 2738, 6135
BseCI ATCGAT 1 cut(s) 324
BseJI GATNNNNATC 4 cut(s) 1086, 1856, 2738, 6135
BseMI GCAATG 7 cut(s) 885, 3129, 4087, 4625, 4808, 6525, 7391
BsePI GCGCGC 1 cut(s) 289
BseSI GKGCMC 3 cut(s) 2322, 5056, 6100
BseYI CCCAGC 2 cut(s) 2538, 7609
BsgI GTGCAG 6 cut(s) 1005, 2238, 3053, 3306, 4318, 4407
Bsh1236I CGCG 6 cut(s) 99, 291, 835, 3454, 4632, 5958
Bsh1285I CGRYCG 2 cut(s) 157, 4069
BshNI GGYRCC 1 cut(s) 3628
BshVI ATCGAT 1 cut(s) 324
BsiEI CGRYCG 2 cut(s) 157, 4069
BsiHKCI CYCGRG 2 cut(s) 6900, 7801
BsiSI CCGG 7 cut(s) 153, 527, 3241, 4549, 7655, 7717, 7769
BslFI GGGAC 9 cut(s) 2521, 2784, 3400, 5035, 5931, 6490, 7211, 7734, 7769
BsmBI CGTCTC 3 cut(s) 444, 2198, 5537
BsmFI GGGAC 9 cut(s) 2521, 2784, 3400, 5035, 5931, 6490, 7211, 7734, 7769
BsmI GAATGC 5 cut(s) 553, 5506, 5914, 7331, 7408
BsoBI CYCGRG 2 cut(s) 6900, 7801
Bsp119I TTCGAA 1 cut(s) 402
Bsp1407I TGTACA 6 cut(s) 646, 766, 3573, 4015, 5551, 5985
Bsp1720I GCTNAGC 2 cut(s) 3435, 5742
Bsp19I CCATGG 5 cut(s) 1350, 3349, 4659, 4814, 5223
BspDI ATCGAT 1 cut(s) 324
BspFNI CGCG 6 cut(s) 99, 291, 835, 3454, 4632, 5958
BspHI TCATGA 2 cut(s) 1854, 3172
BspLI GGNNCC 9 cut(s) 2608, 3630, 3683, 5127, 5898, 6478, 6952, 7177, 7199
BspMAI CTGCAG 6 cut(s) 975, 1384, 2341, 4545, 4576, 6604
BspMI ACCTGC 4 cut(s) 1248, 1417, 3729, 4317
BspOI GCTAGC 2 cut(s) 1305, 7568
BspQI GCTCTTC 5 cut(s) 399, 750, 3463, 4875, 5982
BspT104I TTCGAA 1 cut(s) 402
BspT107I GGYRCC 1 cut(s) 3628
BsrBI CCGCTC 3 cut(s) 409, 1676, 3393
BsrDI GCAATG 7 cut(s) 885, 3129, 4087, 4625, 4808, 6525, 7391
BsrFI RCCGGY 1 cut(s) 4548
BsrGI TGTACA 6 cut(s) 646, 766, 3573, 4015, 5551, 5985
BssAI RCCGGY 1 cut(s) 4548
BssHII GCGCGC 1 cut(s) 289
BssNI GRCGYC 2 cut(s) 246, 7318
BssSI CACGAG 4 cut(s) 1221, 2403, 3194, 7449
BssT1I CCWWGG 9 cut(s) 1350, 3210, 3349, 3606, 3898, 4659, 4779, 4814, 5223
Bst2BI CACGAG 4 cut(s) 1221, 2403, 3194, 7449
BstACI GRCGYC 2 cut(s) 246, 7318
BstAPI GCANNNNNTGC 9 cut(s) 992, 2525, 3797, 5438, 5534, 6319, 6608, 7121, 7397
BstAUI TGTACA 6 cut(s) 646, 766, 3573, 4015, 5551, 5985
BstBAI YACGTR 3 cut(s) 1958, 2249, 2613
BstBI TTCGAA 1 cut(s) 402
BstDSI CCRYGG 6 cut(s) 561, 1350, 3349, 4659, 4814, 5223
BstEII GGTNACC 1 cut(s) 5165
BstFNI CGCG 6 cut(s) 99, 291, 835, 3454, 4632, 5958
BstH2I RGCGCY 1 cut(s) 6791
BstMCI CGRYCG 2 cut(s) 157, 4069
BstPAI GACNNNNGTC 1 cut(s) 140
BstPI GGTNACC 1 cut(s) 5165
BstSLI GKGCMC 3 cut(s) 2322, 5056, 6100
BstUI CGCG 6 cut(s) 99, 291, 835, 3454, 4632, 5958
BstV2I GAAGAC 5 cut(s) 1106, 1322, 2045, 2119, 5058
BstX2I RGATCY 8 cut(s) 1073, 1522, 3214, 4438, 4576, 6182, 6454, 6929
BstXI CCANNNNNNTGG 1 cut(s) 4815
BstYI RGATCY 8 cut(s) 1073, 1522, 3214, 4438, 4576, 6182, 6454, 6929
Bsu15I ATCGAT 1 cut(s) 324
Bsu36I CCTNAGG 2 cut(s) 919, 4443
BsuI GTATCC 2 cut(s) 3696, 7765
BsuTUI ATCGAT 1 cut(s) 324
BtgI CCRYGG 6 cut(s) 561, 1350, 3349, 4659, 4814, 5223
BtgZI GCGATG 2 cut(s) 73, 4682
BtrI CACGTC 1 cut(s) 5738
BtsI GCAGTG 5 cut(s) 2127, 2322, 5396, 5608, 6588
BveI ACCTGC 4 cut(s) 1248, 1417, 3729, 4317
CaiI CAGNNNCTG 1 cut(s) 4145
CciI TCATGA 2 cut(s) 1854, 3172
Cfr10I RCCGGY 1 cut(s) 4548
ClaI ATCGAT 1 cut(s) 324
CpoI CGGWCCG 1 cut(s) 2071
CseI GACGC 4 cut(s) 254, 2180, 6365, 7602
CsiI ACCWGGT 1 cut(s) 7200
CspCI CAANNNNNGTGG 4 cut(s) 1391, 1426, 2856, 2891
CspI CGGWCCG 1 cut(s) 2071
DraI TTTAAA 2 cut(s) 1803, 3693
DraIII CACNNNGTG 1 cut(s) 4296
DrdI GACNNNNNNGTC 1 cut(s) 1267
DseDI GACNNNNNNGTC 1 cut(s) 1267
EaeI YGGCCR 7 cut(s) 36, 58, 693, 3346, 5521, 5859, 6343
EciI GGCGGA 3 cut(s) 244, 1086, 6033
Ecl136II GAGCTC 3 cut(s) 229, 2896, 3603
Eco130I CCWWGG 9 cut(s) 1350, 3210, 3349, 3606, 3898, 4659, 4779, 4814, 5223
Eco24I GRGCYC 6 cut(s) 72, 231, 2609, 2898, 3605, 5128
Eco32I GATATC 2 cut(s) 1124, 1479
Eco47III AGCGCT 1 cut(s) 6789
Eco53kI GAGCTC 3 cut(s) 229, 2896, 3603
Eco72I CACGTG 1 cut(s) 1958
Eco81I CCTNAGG 2 cut(s) 919, 4443
Eco88I CYCGRG 2 cut(s) 6900, 7801
Eco91I GGTNACC 1 cut(s) 5165
EcoICRI GAGCTC 3 cut(s) 229, 2896, 3603
EcoO109I RGGNCCY 3 cut(s) 2471, 2918, 7478
EcoO65I GGTNACC 1 cut(s) 5165
EcoRI GAATTC 2 cut(s) 1567, 7073
EcoRV GATATC 2 cut(s) 1124, 1479
EcoT14I CCWWGG 9 cut(s) 1350, 3210, 3349, 3606, 3898, 4659, 4779, 4814, 5223
EcoT22I ATGCAT 5 cut(s) 4257, 5506, 5650, 5914, 6525
EcoT38I GRGCYC 6 cut(s) 72, 231, 2609, 2898, 3605, 5128
ErhI CCWWGG 9 cut(s) 1350, 3210, 3349, 3606, 3898, 4659, 4779, 4814, 5223
Esp3I CGTCTC 3 cut(s) 444, 2198, 5537
FaqI GGGAC 9 cut(s) 2521, 2784, 3400, 5035, 5931, 6490, 7211, 7734, 7769
FauI CCCGC 5 cut(s) 38, 118, 204, 402, 1853
FauNDI CATATG 2 cut(s) 1887, 2805
FbaI TGATCA 4 cut(s) 553, 1894, 2077, 3667
FblI GTMKAC 2 cut(s) 157, 6624
FriOI GRGCYC 6 cut(s) 72, 231, 2609, 2898, 3605, 5128
GsaI CCCAGC 2 cut(s) 2542, 7613
GsuI CTGGAG 1 cut(s) 116
HaeII RGCGCY 1 cut(s) 6791
HapII CCGG 7 cut(s) 153, 527, 3241, 4549, 7655, 7717, 7769
HgaI GACGC 4 cut(s) 254, 2180, 6365, 7602
Hin1I GRCGYC 2 cut(s) 246, 7318
HincII GTYRAC 5 cut(s) 158, 2929, 3640, 6289, 7275
HindII GTYRAC 5 cut(s) 158, 2929, 3640, 6289, 7275
HindIII AAGCTT 5 cut(s) 4356, 4562, 4605, 5588, 6824
HpaII CCGG 7 cut(s) 153, 527, 3241, 4549, 7655, 7717, 7769
Hpy99I CGWCG 3 cut(s) 227, 245, 248
Hsp92I GRCGYC 2 cut(s) 246, 7318
KroI GCCGGC 1 cut(s) 4548
KroNI GCCGGC 1 cut(s) 4550
Ksp22I TGATCA 4 cut(s) 553, 1894, 2077, 3667
LguI GCTCTTC 5 cut(s) 399, 750, 3463, 4875, 5982
MabI ACCWGGT 1 cut(s) 7200
MbiI CCGCTC 3 cut(s) 409, 1676, 3393
MfeI CAATTG 5 cut(s) 2139, 3015, 3138, 5489, 6030
MflI RGATCY 8 cut(s) 1073, 1522, 3214, 4438, 4576, 6182, 6454, 6929
MlsI TGGCCA 3 cut(s) 695, 3348, 6345
MluNI TGGCCA 3 cut(s) 695, 3348, 6345
MlyI GAGTC 6 cut(s) 153, 2750, 3845, 4628, 5816, 6983
MmeI TCCRAC 3 cut(s) 620, 6736, 7710
Mox20I TGGCCA 3 cut(s) 695, 3348, 6345
Mph1103I ATGCAT 5 cut(s) 4257, 5506, 5650, 5914, 6525
MroNI GCCGGC 1 cut(s) 4548
MroXI GAANNNNTTC 4 cut(s) 1113, 5182, 5280, 5343
MscI TGGCCA 3 cut(s) 695, 3348, 6345
MslI CAYNNNNRTG 9 cut(s) 701, 783, 1859, 1890, 4813, 5361, 6351, 6780, 7401
Msp20I TGGCCA 3 cut(s) 695, 3348, 6345
MspA1I CMGCKG 9 cut(s) 1772, 3260, 4302, 4407, 5983, 6062, 6599, 7088, 7147
MspI CCGG 7 cut(s) 153, 527, 3241, 4549, 7655, 7717, 7769
MunI CAATTG 5 cut(s) 2139, 3015, 3138, 5489, 6030
Mva1269I GAATGC 5 cut(s) 553, 5506, 5914, 7331, 7408
MvnI CGCG 6 cut(s) 99, 291, 835, 3454, 4632, 5958
NaeI GCCGGC 1 cut(s) 4550
NciI CCSGG 3 cut(s) 3242, 7718, 7770
NcoI CCATGG 5 cut(s) 1350, 3349, 4659, 4814, 5223
NdeI CATATG 2 cut(s) 1887, 2805
NgoMIV GCCGGC 1 cut(s) 4548
NheI GCTAGC 2 cut(s) 1301, 7564
NlaIV GGNNCC 9 cut(s) 2608, 3630, 3683, 5127, 5898, 6478, 6952, 7177, 7199
NmeAIII GCCGAG 5 cut(s) 36, 319, 439, 4741, 5549
NmuCI GTSAC 4 cut(s) 3143, 4319, 6829, 7614
NsiI ATGCAT 5 cut(s) 4257, 5506, 5650, 5914, 6525
NspV TTCGAA 1 cut(s) 402
PaeI GCATGC 2 cut(s) 2284, 7400
PagI TCATGA 2 cut(s) 1854, 3172
PaqCI CACCTGC 2 cut(s) 1248, 4317
PauI GCGCGC 1 cut(s) 289
PciI ACATGT 4 cut(s) 1206, 1985, 5870, 7269
PciSI GCTCTTC 5 cut(s) 399, 750, 3463, 4875, 5982
PcsI WCGNNNNNNNCGW 3 cut(s) 63, 123, 7255
PctI GAATGC 5 cut(s) 553, 5506, 5914, 7331, 7408
PdiI GCCGGC 1 cut(s) 4550
PdmI GAANNNNTTC 4 cut(s) 1113, 5182, 5280, 5343
PflFI GACNNNGTC 3 cut(s) 1588, 6686, 7202
PflMI CCANNNNNTGG 5 cut(s) 1356, 2616, 2767, 3344, 7207
PfoI TCCNGGA 2 cut(s) 2584, 5235
Ple19I CGATCG 1 cut(s) 4069
PleI GAGTC 6 cut(s) 153, 2750, 3844, 4628, 5815, 6983
PmaCI CACGTG 1 cut(s) 1958
PmlI CACGTG 1 cut(s) 1958
PpsI GAGTC 6 cut(s) 153, 2750, 3844, 4628, 5815, 6983
Ppu21I YACGTR 3 cut(s) 1958, 2249, 2613
PpuMI RGGWCCY 2 cut(s) 2471, 7478
PscI ACATGT 4 cut(s) 1206, 1985, 5870, 7269
PshAI GACNNNNGTC 1 cut(s) 140
PshBI ATTAAT 2 cut(s) 1397, 7221
Psp124BI GAGCTC 3 cut(s) 231, 2898, 3605
Psp5II RGGWCCY 2 cut(s) 2471, 7478
PspCI CACGTG 1 cut(s) 1958
PspEI GGTNACC 1 cut(s) 5165
PspFI CCCAGC 2 cut(s) 2538, 7609
PspN4I GGNNCC 9 cut(s) 2608, 3630, 3683, 5127, 5898, 6478, 6952, 7177, 7199
PspPPI RGGWCCY 2 cut(s) 2471, 7478
PstI CTGCAG 6 cut(s) 975, 1384, 2341, 4545, 4576, 6604
PstNI CAGNNNCTG 1 cut(s) 4145
PsuI RGATCY 8 cut(s) 1073, 1522, 3214, 4438, 4576, 6182, 6454, 6929
PsyI GACNNNGTC 3 cut(s) 1588, 6686, 7202
PteI GCGCGC 1 cut(s) 289
PvuI CGATCG 1 cut(s) 4069
PvuII CAGCTG 8 cut(s) 3260, 4302, 4407, 5983, 6062, 6599, 7088, 7147
RseI CAYNNNNRTG 9 cut(s) 701, 783, 1859, 1890, 4813, 5361, 6351, 6780, 7401
Rsr2I CGGWCCG 1 cut(s) 2071
RsrII CGGWCCG 1 cut(s) 2071
SacI GAGCTC 3 cut(s) 231, 2898, 3605
SalI GTCGAC 1 cut(s) 156
SapI GCTCTTC 5 cut(s) 399, 750, 3463, 4875, 5982
SchI GAGTC 6 cut(s) 153, 2750, 3845, 4628, 5816, 6983
SexAI ACCWGGT 1 cut(s) 7200
SfuI TTCGAA 1 cut(s) 402
SmiMI CAYNNNNRTG 9 cut(s) 701, 783, 1859, 1890, 4813, 5361, 6351, 6780, 7401
SmlI CTYRAG 8 cut(s) 592, 905, 2033, 2559, 2666, 4244, 4862, 6014
SmoI CTYRAG 8 cut(s) 592, 905, 2033, 2559, 2666, 4244, 4862, 6014
SpeI ACTAGT 3 cut(s) 538, 3026, 4187
SphI GCATGC 2 cut(s) 2284, 7400
SspI AATATT 2 cut(s) 966, 1309
SstI GAGCTC 3 cut(s) 231, 2898, 3605
StyI CCWWGG 9 cut(s) 1350, 3210, 3349, 3606, 3898, 4659, 4779, 4814, 5223
TaqII GACCGA 1 cut(s) 3657
TatI WGTACW 9 cut(s) 646, 766, 2431, 3573, 4015, 5473, 5551, 5985, 7414
TauI GCSGC 7 cut(s) 41, 286, 1349, 2836, 5601, 7571, 7694
TseFI GTSAC 4 cut(s) 3143, 4319, 6829, 7614
Tsp45I GTSAC 4 cut(s) 3143, 4319, 6829, 7614
Tth111I GACNNNGTC 3 cut(s) 1588, 6686, 7202
Van91I CCANNNNNTGG 5 cut(s) 1356, 2616, 2767, 3344, 7207
VneI GTGCAC 3 cut(s) 2318, 5052, 6096
VspI ATTAAT 2 cut(s) 1397, 7221
XapI RAATTY 6 cut(s) 1092, 1567, 4916, 6763, 7073, 7154
XbaI TCTAGA 2 cut(s) 1723, 5785
XcmI CCANNNNNNNNNTGG 2 cut(s) 4142, 6692
XmiI GTMKAC 2 cut(s) 157, 6624
XmnI GAANNNNTTC 4 cut(s) 1113, 5182, 5280, 5343
ZraI GACGTC 1 cut(s) 7319
Zsp2I ATGCAT 5 cut(s) 4257, 5506, 5650, 5914, 6525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.