Rorug06G0396600

phosphatidylinositol-3-phosphate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0005768
Physical Location & Seq
Forward (+)
54275522 .. 54277336
1815 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0396600.1

Sequence Viewer

Length: 885 bp
ATGTGTCCGACAAAGCCGAAGCACCGGAGTTCCGTCGTCGATCACGCCGGCAAATGCTCCAGATCCGGAGAGTCCACAACCTCCACCGCCGACTGGATCTCCGAGACAATCCAAGGCGGATCCTTACCCCACGTCGACCTCCACACCGGAACGAACGGCTGGGCATCACCTCCCGGCGACCTATTCTCTCTCCGTGGAAAAAACTACTTGACAAGACGACAAAAAGCGCCCGCCGGAGACTACCTACTGACCCCGGTGGCCACCGACTGGCTCAAATCCAGTTCGAAGCTGGAAAATGTACTCGCCCGTCCCGATAACCGTGTGGCGCACGCGCTGCGGAAGGCCCAAGCCCAAGGCAAGTCCCTGAAGAGCTTCATCTTCGCTGTGAATCTGCAGGTGCCAGGTAAGGACCAGCACAGCGCGGTGTTCTACTTCGCCGCAGAGGATCCCATCCCGTCGGGGTCACTCCTCCACCGGTTCATCAACGGCGACGACGCGTTCCGGAACCAGCGGCTCAAGATCGTGAATCGGATCGTGAAGGGGCCGTGGATCGTTGAGAAAACGGTGGGGAATTACAGCGCGTGTTTGTTGGGGAAAGCGCTGACGTGTAATTACCATAGAGGACCAAACTACTTGGAGATTGACGTGGATATCGCCAGCTCCGGGATCGCCAAGGCCATTCTGCGACTGGCATTGAGATACGTGACGAGCGTGACGATCGACATGGGGTTTCTGGTGGAGGCGCAGACAGAGGATGAGTTGCCCGAGAGGTTAGTCGGTGCCGTTAGGATTTGCCAGATGGAGATGTCCTCCGCAACGGTAATCGACGCGCCACCGCACGTCGCTCGTGCCCAGAGTTTTGCCAGGGTTAATCACAACTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

294

Amino Acids

32.16

Weight (kDa)

9.22

Isoelectric Point (pI)

33.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR2_C PF07059 54 - 268 1.5e-79 Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 385
Acc36I ACCTGC 1 cut(s) 385
AccB1I GGYRCC 2 cut(s) 397, 779
AccB7I CCANNNNNTGG 1 cut(s) 267
AccI GTMKAC 1 cut(s) 135
AccII CGCG 5 cut(s) 332, 422, 497, 581, 830
AccIII TCCGGA 2 cut(s) 65, 501
AciI CCGC 9 cut(s) 87, 117, 231, 337, 422, 438, 511, 813, 836
AclWI GGATC 9 cut(s) 57, 104, 114, 127, 440, 453, 539, 557, 674
AcoI YGGCCR 1 cut(s) 258
AcuI CTGAAG 1 cut(s) 386
AfaI GTAC 1 cut(s) 300
AfeI AGCGCT 1 cut(s) 600
AfiI CCNNNNNNNGG 3 cut(s) 93, 267, 663
AflIII ACRYGT 2 cut(s) 495, 605
AgeI ACCGGT 1 cut(s) 474
AjiI CACGTC 4 cut(s) 133, 606, 646, 841
AjnI CCWGG 2 cut(s) 400, 863
AluBI AGCT 3 cut(s) 289, 372, 660
AluI AGCT 3 cut(s) 289, 372, 660
Alw26I GTCTC 2 cut(s) 98, 231
AlwI GGATC 9 cut(s) 57, 104, 114, 127, 440, 453, 539, 557, 674
Ama87I CYCGRG 1 cut(s) 764
Aor13HI TCCGGA 2 cut(s) 65, 501
Aor51HI AGCGCT 1 cut(s) 600
AoxI GGCC 4 cut(s) 258, 342, 542, 675
ApeKI GCWGC 1 cut(s) 334
AsiGI ACCGGT 1 cut(s) 474
Asp700I GAANNNNTTC 1 cut(s) 371
AspLEI GCGC 8 cut(s) 229, 328, 334, 422, 581, 601, 745, 832
AspS9I GGNCC 4 cut(s) 343, 409, 542, 623
AsuC2I CCSGG 3 cut(s) 174, 254, 664
AsuHPI GGTGA 1 cut(s) 159
AsuII TTCGAA 1 cut(s) 284
AvaI CYCGRG 1 cut(s) 764
AvaII GGWCC 2 cut(s) 409, 623
BaeGI GKGCMC 1 cut(s) 853
BalI TGGCCA 1 cut(s) 260
BamHI GGATCC 2 cut(s) 119, 445
BanI GGYRCC 2 cut(s) 397, 779
BauI CACGAG 1 cut(s) 846
BbvI GCAGC 1 cut(s) 321
BccI CCATC 2 cut(s) 458, 793
BceAI ACGGC 4 cut(s) 172, 502, 529, 767
BcgI CGANNNNNNTGC 2 cut(s) 827, 861
BciT130I CCWGG 2 cut(s) 402, 865
BcnI CCSGG 3 cut(s) 174, 254, 664
BcoDI GTCTC 2 cut(s) 98, 231
BfmI CTRYAG 1 cut(s) 392
BfoI RGCGCY 2 cut(s) 230, 602
BfuAI ACCTGC 1 cut(s) 385
BisI GCNGC 3 cut(s) 335, 438, 512
BlsI GCNGC 3 cut(s) 336, 439, 513
Bme1390I CCNGG 5 cut(s) 174, 254, 402, 664, 865
Bme18I GGWCC 2 cut(s) 409, 623
BmeT110I CYCGRG 1 cut(s) 764
BmgBI CACGTC 4 cut(s) 133, 606, 646, 841
BmgT120I GGNCC 4 cut(s) 343, 409, 542, 623
BmiI GGNNCC 6 cut(s) 121, 399, 447, 506, 543, 781
BmrFI CCNGG 5 cut(s) 174, 254, 402, 664, 865
BmsI GCATC 1 cut(s) 173
BplI GAGNNNNNCTC 2 cut(s) 794, 826
BpmI CTGGAG 1 cut(s) 43
Bpu14I TTCGAA 1 cut(s) 284
BpuEI CTTGAG 1 cut(s) 500
BpuMI CCSGG 3 cut(s) 174, 254, 664
BsaAI YACGTR 1 cut(s) 703
BsaJI CCNNGG 7 cut(s) 112, 193, 252, 352, 545, 672, 864
BsaWI WCCGGW 5 cut(s) 24, 65, 146, 474, 501
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 3 cut(s) 93, 267, 663
Bse118I RCCGGY 2 cut(s) 47, 474
Bse1I ACTGG 4 cut(s) 98, 272, 279, 693
BseAI TCCGGA 2 cut(s) 65, 501
BseBI CCWGG 2 cut(s) 402, 865
BseDI CCNNGG 7 cut(s) 112, 193, 252, 352, 545, 672, 864
BseGI GGATG 2 cut(s) 450, 760
BseLI CCNNNNNNNGG 3 cut(s) 93, 267, 663
BseNI ACTGG 4 cut(s) 98, 272, 279, 693
BseRI GAGGAG 1 cut(s) 458
BseSI GKGCMC 1 cut(s) 853
BseXI GCAGC 1 cut(s) 321
BseYI CCCAGC 1 cut(s) 159
Bsh1236I CGCG 5 cut(s) 332, 422, 497, 581, 830
Bsh1285I CGRYCG 1 cut(s) 720
BshFI GGCC 4 cut(s) 260, 344, 544, 677
BshNI GGYRCC 2 cut(s) 397, 779
BshTI ACCGGT 1 cut(s) 474
BsiEI CGRYCG 1 cut(s) 720
BsiHKCI CYCGRG 1 cut(s) 764
BslFI GGGAC 2 cut(s) 294, 346
BslI CCNNNNNNNGG 3 cut(s) 93, 267, 663
BsmAI GTCTC 2 cut(s) 98, 231
BsmFI GGGAC 2 cut(s) 294, 346
BsnI GGCC 4 cut(s) 260, 344, 544, 677
BsoBI CYCGRG 1 cut(s) 764
Bsp119I TTCGAA 1 cut(s) 284
Bsp1286I GDGCHC 1 cut(s) 853
Bsp13I TCCGGA 2 cut(s) 65, 501
BspACI CCGC 9 cut(s) 87, 117, 231, 337, 422, 438, 511, 813, 836
BspANI GGCC 4 cut(s) 260, 344, 544, 677
BspEI TCCGGA 2 cut(s) 65, 501
BspFNI CGCG 5 cut(s) 332, 422, 497, 581, 830
BspLI GGNNCC 6 cut(s) 121, 399, 447, 506, 543, 781
BspMAI CTGCAG 1 cut(s) 396
BspMI ACCTGC 1 cut(s) 385
BspPI GGATC 9 cut(s) 57, 104, 114, 127, 440, 453, 539, 557, 674
BspQI GCTCTTC 1 cut(s) 362
BspT104I TTCGAA 1 cut(s) 284
BspT107I GGYRCC 2 cut(s) 397, 779
BsrFI RCCGGY 2 cut(s) 47, 474
BsrI ACTGG 4 cut(s) 98, 272, 279, 693
BssAI RCCGGY 2 cut(s) 47, 474
BssECI CCNNGG 7 cut(s) 112, 193, 252, 352, 545, 672, 864
BssSI CACGAG 1 cut(s) 846
BssT1I CCWWGG 3 cut(s) 112, 352, 672
Bst2BI CACGAG 1 cut(s) 846
Bst2UI CCWGG 2 cut(s) 402, 865
Bst4CI ACNGT 4 cut(s) 320, 565, 820, 881
Bst6I CTCTTC 1 cut(s) 362
BstAPI GCANNNNNTGC 1 cut(s) 334
BstBAI YACGTR 1 cut(s) 703
BstBI TTCGAA 1 cut(s) 284
BstC8I GCNNGC 4 cut(s) 49, 231, 330, 658
BstDSI CCRYGG 2 cut(s) 193, 545
BstF5I GGATG 2 cut(s) 450, 760
BstFNI CGCG 5 cut(s) 332, 422, 497, 581, 830
BstH2I RGCGCY 2 cut(s) 230, 602
BstHHI GCGC 8 cut(s) 229, 328, 334, 422, 581, 601, 745, 832
BstMAI GTCTC 2 cut(s) 98, 231
BstMCI CGRYCG 1 cut(s) 720
BstMWI GCNNNNNNNGC 1 cut(s) 334
BstNI CCWGG 2 cut(s) 402, 865
BstSCI CCNGG 5 cut(s) 172, 252, 400, 662, 863
BstSFI CTRYAG 1 cut(s) 392
BstSLI GKGCMC 1 cut(s) 853
BstUI CGCG 5 cut(s) 332, 422, 497, 581, 830
BstV1I GCAGC 1 cut(s) 321
BstX2I RGATCY 4 cut(s) 62, 96, 119, 445
BstYI RGATCY 4 cut(s) 62, 96, 119, 445
BsuRI GGCC 4 cut(s) 260, 344, 544, 677
BtgI CCRYGG 2 cut(s) 193, 545
BtrI CACGTC 4 cut(s) 133, 606, 646, 841
BtsCI GGATG 2 cut(s) 450, 760
BveI ACCTGC 1 cut(s) 385
Cac8I GCNNGC 4 cut(s) 49, 231, 330, 658
CfoI GCGC 8 cut(s) 229, 328, 334, 422, 581, 601, 745, 832
Cfr10I RCCGGY 2 cut(s) 47, 474
Cfr13I GGNCC 4 cut(s) 343, 409, 542, 623
CseI GACGC 2 cut(s) 503, 836
Csp6I GTAC 1 cut(s) 299
CspAI ACCGGT 1 cut(s) 474
CviAII CATG 1 cut(s) 724
CviQI GTAC 1 cut(s) 299
EaeI YGGCCR 1 cut(s) 258
Eam1104I CTCTTC 1 cut(s) 362
EarI CTCTTC 1 cut(s) 362
EciI GGCGGA 1 cut(s) 132
Eco130I CCWWGG 3 cut(s) 112, 352, 672
Eco32I GATATC 1 cut(s) 652
Eco47I GGWCC 2 cut(s) 409, 623
Eco47III AGCGCT 1 cut(s) 600
Eco57I CTGAAG 1 cut(s) 386
Eco88I CYCGRG 1 cut(s) 764
EcoRII CCWGG 2 cut(s) 400, 863
EcoRV GATATC 1 cut(s) 652
EcoT14I CCWWGG 3 cut(s) 112, 352, 672
ErhI CCWWGG 3 cut(s) 112, 352, 672
FaeI CATG 1 cut(s) 727
FaiI YATR 2 cut(s) 618, 725
FaqI GGGAC 2 cut(s) 294, 346
FatI CATG 1 cut(s) 723
FauI CCCGC 1 cut(s) 238
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 3 cut(s) 335, 438, 512
FokI GGATG 2 cut(s) 437, 767
Fsp4HI GCNGC 3 cut(s) 335, 438, 512
GlaI GCGC 8 cut(s) 228, 327, 333, 421, 580, 600, 744, 831
GluI GCNGC 3 cut(s) 335, 438, 512
GsaI CCCAGC 1 cut(s) 163
GsuI CTGGAG 1 cut(s) 43
HaeII RGCGCY 2 cut(s) 230, 602
HaeIII GGCC 4 cut(s) 260, 344, 544, 677
HgaI GACGC 2 cut(s) 503, 836
HhaI GCGC 8 cut(s) 229, 328, 334, 422, 581, 601, 745, 832
Hin1II CATG 1 cut(s) 727
Hin6I GCGC 8 cut(s) 227, 326, 332, 420, 579, 599, 743, 830
HinP1I GCGC 8 cut(s) 227, 326, 332, 420, 579, 599, 743, 830
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 3 cut(s) 71, 388, 526
HphI GGTGA 1 cut(s) 159
Hpy166II GTNNAC 2 cut(s) 75, 136
Hpy188I TCNGA 3 cut(s) 9, 103, 531
Hpy188III TCNNGA 7 cut(s) 60, 66, 311, 502, 517, 523, 535
Hpy8I GTNNAC 2 cut(s) 75, 136
Hpy99I CGWCG 8 cut(s) 38, 41, 137, 460, 494, 497, 830, 845
HpyAV CCTTC 2 cut(s) 334, 532
HpyCH4III ACNGT 4 cut(s) 320, 565, 820, 881
HpyCH4IV ACGT 5 cut(s) 132, 605, 645, 702, 840
HpyCH4V TGCA 1 cut(s) 394
HpyF10VI GCNNNNNNNGC 1 cut(s) 334
HpySE526I ACGT 5 cut(s) 132, 605, 645, 702, 840
Hsp92II CATG 1 cut(s) 727
HspAI GCGC 8 cut(s) 227, 326, 332, 420, 579, 599, 743, 830
Kpn2I TCCGGA 2 cut(s) 65, 501
KroI GCCGGC 1 cut(s) 47
KroNI GCCGGC 1 cut(s) 49
LguI GCTCTTC 1 cut(s) 362
LmnI GCTCC 2 cut(s) 62, 665
Lsp1109I GCAGC 1 cut(s) 321
LweI GCATC 1 cut(s) 173
MaeII ACGT 5 cut(s) 132, 605, 645, 702, 840
MaeIII GTNAC 3 cut(s) 462, 703, 712
MboII GAAGA 2 cut(s) 370, 379
MflI RGATCY 4 cut(s) 62, 96, 119, 445
MhlI GDGCHC 1 cut(s) 853
MlsI TGGCCA 1 cut(s) 260
MluCI AATT 2 cut(s) 571, 610
MluI ACGCGT 1 cut(s) 495
MluNI TGGCCA 1 cut(s) 260
MlyI GAGTC 1 cut(s) 80
MmeI TCCRAC 1 cut(s) 32
Mox20I TGGCCA 1 cut(s) 260
MroI TCCGGA 2 cut(s) 65, 501
MroNI GCCGGC 1 cut(s) 47
MroXI GAANNNNTTC 1 cut(s) 371
MscI TGGCCA 1 cut(s) 260
MseI TTAA 1 cut(s) 870
Msp20I TGGCCA 1 cut(s) 260
MspA1I CMGCKG 1 cut(s) 511
MspR9I CCNGG 5 cut(s) 174, 254, 402, 664, 865
MvaI CCWGG 2 cut(s) 402, 865
MvnI CGCG 5 cut(s) 332, 422, 497, 581, 830
MwoI GCNNNNNNNGC 1 cut(s) 334
NaeI GCCGGC 1 cut(s) 49
NciI CCSGG 3 cut(s) 174, 254, 664
NgoMIV GCCGGC 1 cut(s) 47
NlaIII CATG 1 cut(s) 727
NlaIV GGNNCC 6 cut(s) 121, 399, 447, 506, 543, 781
NmuCI GTSAC 3 cut(s) 462, 703, 712
NspV TTCGAA 1 cut(s) 284
PaqCI CACCTGC 1 cut(s) 385
PciSI GCTCTTC 1 cut(s) 362
PcsI WCGNNNNNNNCGW 3 cut(s) 309, 708, 713
PdiI GCCGGC 1 cut(s) 49
PdmI GAANNNNTTC 1 cut(s) 371
PfeI GAWTC 2 cut(s) 388, 526
PflMI CCANNNNNTGG 1 cut(s) 267
PfoI TCCNGGA 1 cut(s) 662
PinAI ACCGGT 1 cut(s) 474
PkrI GCNGC 3 cut(s) 336, 439, 513
Ple19I CGATCG 1 cut(s) 720
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
Ppu21I YACGTR 1 cut(s) 703
Psp6I CCWGG 2 cut(s) 400, 863
PspFI CCCAGC 1 cut(s) 159
PspGI CCWGG 2 cut(s) 400, 863
PspN4I GGNNCC 6 cut(s) 121, 399, 447, 506, 543, 781
PspPI GGNCC 4 cut(s) 343, 409, 542, 623
PstI CTGCAG 1 cut(s) 396
PsuI RGATCY 4 cut(s) 62, 96, 119, 445
PvuI CGATCG 1 cut(s) 720
RsaI GTAC 1 cut(s) 300
RsaNI GTAC 1 cut(s) 299
SalI GTCGAC 1 cut(s) 134
SapI GCTCTTC 1 cut(s) 362
SaqAI TTAA 1 cut(s) 870
SatI GCNGC 3 cut(s) 335, 438, 512
Sau96I GGNCC 4 cut(s) 343, 409, 542, 623
SchI GAGTC 1 cut(s) 80
ScrFI CCNGG 5 cut(s) 174, 254, 402, 664, 865
SduI GDGCHC 1 cut(s) 853
SfaNI GCATC 1 cut(s) 173
SfcI CTRYAG 1 cut(s) 392
SfuI TTCGAA 1 cut(s) 284
SinI GGWCC 2 cut(s) 409, 623
SmlI CTYRAG 1 cut(s) 515
SmoI CTYRAG 1 cut(s) 515
Sse9I AATT 2 cut(s) 571, 610
SsiI CCGC 9 cut(s) 87, 117, 231, 337, 422, 438, 511, 813, 836
StyD4I CCNGG 5 cut(s) 172, 252, 400, 662, 863
StyI CCWWGG 3 cut(s) 112, 352, 672
TaaI ACNGT 4 cut(s) 320, 565, 820, 881
TaiI ACGT 5 cut(s) 135, 608, 648, 705, 843
TaqI TCGA 5 cut(s) 39, 135, 284, 720, 825
TasI AATT 2 cut(s) 571, 610
TatI WGTACW 1 cut(s) 298
TauI GCSGC 2 cut(s) 440, 514
TfiI GAWTC 2 cut(s) 388, 526
Tru1I TTAA 1 cut(s) 870
Tru9I TTAA 1 cut(s) 870
TseFI GTSAC 3 cut(s) 462, 703, 712
TseI GCWGC 1 cut(s) 334
Tsp45I GTSAC 3 cut(s) 462, 703, 712
TspDTI ATGAA 2 cut(s) 364, 469
TspGWI ACGGA 2 cut(s) 22, 182
Van91I CCANNNNNTGG 1 cut(s) 267
VpaK11BI GGWCC 2 cut(s) 409, 623
XcmI CCANNNNNNNNNTGG 2 cut(s) 286, 685
XmiI GTMKAC 1 cut(s) 135
XmnI GAANNNNTTC 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.