Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003245.1

Orthogroup ID

OG0006457

Physical Location & Seq

Genomic Coordinates Forward (+)

29576 .. 31735

Gene Structure 2160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

atggtgtctgtgaacccaaacccagcacctcagggtttctacttattcgatcccaccaacatgggccttcccggcctcaattccgtgccgccgcccacgacgccttctacgaccaccaccaccacgtcgtccgcgccccaaaacgccgcgtcgttggccgaagatctgagcaagaagatccggaaaccctatacgattaccaagtccagggagagctggactgaacaggagcacgacaagtttctagaagctctccagctatttgaccgcgactggaagaagattgaagcatttattggctcaaaaacggttattcagatacgtagccatgcacaaaagtactttttgaaggttcagaaaaaagggacaagcgagcatgtacctcctcctcggccaaagaggaaagcaactcatccatacccacaaaaagctcctaaaagtgctccagtagcatctcaagttgttgtgccatttgaatcctcatctgctttgcttgaacatggatatgcttaccagccagactcctcatttgtgcttggcactccagttaccagtgcaagtttatcttcctggagtcatagttatgtgcctccagtcaatgcatcacaagtaactaaagatgatggaaagctagctggttcaacagatgcacagaactcttgctacagtagtagtaatgaaagcaagcctacaacttggctaatgggtgagacagttggtcgagcatgtcatcgccagccacagagaggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0042493 GO:0046677 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

250

Amino Acids

27.34

Weight (kDa)

9.41

Isoelectric Point (pI)

49.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	70 - 115	4.4e-12	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01520 AT1G01520 AT1G01520 AT1G01520 AT1G01520 AT4G01280 AT4G01280
fragaria_vesca	FvH4_7g15140 FvH4_7g15140 FvH4_7g15140
malus_domestica	MD01G1070000.v1.1 MD07G1132500.v1.1
prunus_persica	Prupe.2G176200_v2.0.a1 Prupe.2G176200_v2.0.a1
pyrus_communis	pycom07g12930
rosa_chinensis	RchiOBHm_Chr1g0357331
rosa_laevigata	RLG00000028026
rosa_multiflora	Rmu_sc0003245.1_g000004
rosa_roxburghii	Rroxscaffold_4G00298820
rosa_rugosa	Rorug01G0256500
rosa_samantha	Rh1AG269700 Rh1BG237600 Rh1CG253900 Rh1DG265500
rosa_wichuraiana	Rw1G023900 Rw1G023950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	134, 149, 270
AccIII	TCCGGA	1 cut(s)	180
AciI	CCGC	5 cut(s)	89, 92, 132, 147, 268
AclWI	GGATC	2 cut(s)	44, 172
AcoI	YGGCCR	2 cut(s)	156, 392
AcyI	GRCGYC	1 cut(s)	101
AfaI	GTAC	2 cut(s)	341, 381
AfiI	CCNNNNNNNGG	2 cut(s)	207, 746
AgsI	TTSAA	5 cut(s)	287, 349, 476, 497, 642
AhdI	GACNNNNNGTC	1 cut(s)	717
AjiI	CACGTC	1 cut(s)	126
AjnI	CCWGG	2 cut(s)	206, 569
AjuI	GAANNNNNNNTTGG	2 cut(s)	279, 311
AluBI	AGCT	6 cut(s)	216, 251, 259, 431, 631, 635
AluI	AGCT	6 cut(s)	216, 251, 259, 431, 631, 635
Alw21I	GWGCWC	2 cut(s)	234, 445
Alw26I	GTCTC	1 cut(s)	704
AlwI	GGATC	2 cut(s)	44, 172
Aor13HI	TCCGGA	1 cut(s)	180
AoxI	GGCC	4 cut(s)	64, 73, 156, 392
ArsI	GACNNNNNNTTYG	2 cut(s)	512, 544
AspLEI	GCGC	1 cut(s)	136
AspS9I	GGNCC	1 cut(s)	64
AsuC2I	CCSGG	1 cut(s)	72
AsuHPI	GGTGA	1 cut(s)	719
AsuNHI	GCTAGC	1 cut(s)	631
AxyI	CCTNAGG	1 cut(s)	30
Bbv12I	GWGCWC	2 cut(s)	234, 445
BccI	CCATC	1 cut(s)	617
BciT130I	CCWGG	2 cut(s)	208, 571
BcnI	CCSGG	1 cut(s)	72
BcoDI	GTCTC	1 cut(s)	704
BfaI	CTAG	2 cut(s)	245, 632
BfmI	CTRYAG	1 cut(s)	664
BglI	GCCNNNNNGGC	1 cut(s)	72
BglII	AGATCT	1 cut(s)	163
BisI	GCNGC	3 cut(s)	89, 92, 147
BlsI	GCNGC	3 cut(s)	90, 93, 148
BmcAI	AGTACT	1 cut(s)	341
Bme1390I	CCNGG	3 cut(s)	72, 208, 571
BmeRI	GACNNNNNGTC	1 cut(s)	717
BmgBI	CACGTC	1 cut(s)	126
BmgT120I	GGNCC	1 cut(s)	64
BmrFI	CCNGG	3 cut(s)	72, 208, 571
BmsI	GCATC	3 cut(s)	461, 611, 637
BmtI	GCTAGC	1 cut(s)	635
BpmI	CTGGAG	5 cut(s)	239, 429, 528, 576, 592
BpuEI	CTTGAG	1 cut(s)	441
BpuMI	CCSGG	1 cut(s)	72
BsaAI	YACGTR	1 cut(s)	323
BsaHI	GRCGYC	1 cut(s)	101
BsaJI	CCNNGG	2 cut(s)	207, 389
BsaWI	WCCGGW	1 cut(s)	180
BsaXI	ACNNNNNCTCC	2 cut(s)	565, 595
Bsc4I	CCNNNNNNNGG	2 cut(s)	207, 746
Bse1I	ACTGG	5 cut(s)	278, 446, 545, 552, 593
Bse21I	CCTNAGG	1 cut(s)	30
BseAI	TCCGGA	1 cut(s)	180
BseBI	CCWGG	2 cut(s)	208, 571
BseDI	CCNNGG	2 cut(s)	207, 389
BseGI	GGATG	1 cut(s)	412
BseLI	CCNNNNNNNGG	2 cut(s)	207, 746
BseMII	CTCAG	2 cut(s)	44, 158
BseNI	ACTGG	5 cut(s)	278, 446, 545, 552, 593
BseRI	GAGGAG	3 cut(s)	375, 378, 514
BseYI	CCCAGC	1 cut(s)	22
Bsh1236I	CGCG	3 cut(s)	134, 149, 270
BshFI	GGCC	4 cut(s)	66, 75, 158, 394
BsiHKAI	GWGCWC	2 cut(s)	234, 445
BsiSI	CCGG	2 cut(s)	72, 181
BslFI	GGGAC	1 cut(s)	379
BslI	CCNNNNNNNGG	2 cut(s)	207, 746
BsmAI	GTCTC	1 cut(s)	704
BsmFI	GGGAC	1 cut(s)	379
BsnI	GGCC	4 cut(s)	66, 75, 158, 394
Bsp1286I	GDGCHC	2 cut(s)	234, 445
Bsp13I	TCCGGA	1 cut(s)	180
Bsp143I	GATC	3 cut(s)	49, 163, 177
BspACI	CCGC	5 cut(s)	89, 92, 132, 147, 268
BspANI	GGCC	4 cut(s)	66, 75, 158, 394
BspCNI	CTCAG	2 cut(s)	43, 159
BspEI	TCCGGA	1 cut(s)	180
BspFNI	CGCG	3 cut(s)	134, 149, 270
BspOI	GCTAGC	1 cut(s)	635
BspPI	GGATC	2 cut(s)	44, 172
BsrI	ACTGG	5 cut(s)	278, 446, 545, 552, 593
BssECI	CCNNGG	2 cut(s)	207, 389
BssMI	GATC	3 cut(s)	49, 163, 177
BssNI	GRCGYC	1 cut(s)	101
Bst2UI	CCWGG	2 cut(s)	208, 571
Bst4CI	ACNGT	3 cut(s)	310, 668, 715
BstACI	GRCGYC	1 cut(s)	101
BstBAI	YACGTR	1 cut(s)	323
BstC8I	GCNNGC	4 cut(s)	374, 633, 686, 737
BstDEI	CTNAG	2 cut(s)	30, 167
BstF5I	GGATG	1 cut(s)	412
BstFNI	CGCG	3 cut(s)	134, 149, 270
BstHHI	GCGC	1 cut(s)	136
BstKTI	GATC	3 cut(s)	52, 166, 180
BstMAI	GTCTC	1 cut(s)	704
BstMBI	GATC	3 cut(s)	49, 163, 177
BstMWI	GCNNNNNNNGC	4 cut(s)	72, 100, 155, 449
BstNI	CCWGG	2 cut(s)	208, 571
BstNSI	RCATGY	2 cut(s)	380, 729
BstSCI	CCNGG	3 cut(s)	70, 206, 569
BstSFI	CTRYAG	1 cut(s)	664
BstSNI	TACGTA	1 cut(s)	323
BstUI	CGCG	3 cut(s)	134, 149, 270
BstX2I	RGATCY	2 cut(s)	163, 177
BstXI	CCANNNNNNTGG	1 cut(s)	61
BstYI	RGATCY	2 cut(s)	163, 177
Bsu36I	CCTNAGG	1 cut(s)	30
BsuRI	GGCC	4 cut(s)	66, 75, 158, 394
BtgZI	GCGATG	1 cut(s)	716
BtrI	CACGTC	1 cut(s)	126
BtsCI	GGATG	1 cut(s)	412
BtsIMutI	CAGTG	1 cut(s)	559
Cac8I	GCNNGC	4 cut(s)	374, 633, 686, 737
CfoI	GCGC	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	64
CseI	GACGC	2 cut(s)	109, 138
Csp6I	GTAC	2 cut(s)	340, 380
CviAII	CATG	5 cut(s)	61, 329, 377, 500, 726
CviQI	GTAC	2 cut(s)	340, 380
DdeI	CTNAG	2 cut(s)	30, 167
DpnI	GATC	3 cut(s)	51, 165, 179
DpnII	GATC	3 cut(s)	49, 163, 177
DriI	GACNNNNNGTC	1 cut(s)	717
EaeI	YGGCCR	2 cut(s)	156, 392
Eam1105I	GACNNNNNGTC	1 cut(s)	717
Eco105I	TACGTA	1 cut(s)	323
Eco81I	CCTNAGG	1 cut(s)	30
EcoRII	CCWGG	2 cut(s)	206, 569
EcoT22I	ATGCAT	1 cut(s)	604
FaeI	CATG	5 cut(s)	64, 332, 380, 503, 729
FalI	AAGNNNNNCTT	2 cut(s)	550, 582
FaqI	GGGAC	1 cut(s)	379
FatI	CATG	5 cut(s)	60, 328, 376, 499, 725
Fnu4HI	GCNGC	3 cut(s)	89, 92, 147
FokI	GGATG	1 cut(s)	399
Fsp4HI	GCNGC	3 cut(s)	89, 92, 147
FspBI	CTAG	2 cut(s)	245, 632
GlaI	GCGC	1 cut(s)	135
GluI	GCNGC	3 cut(s)	89, 92, 147
GsaI	CCCAGC	1 cut(s)	26
GsuI	CTGGAG	5 cut(s)	239, 429, 528, 576, 592
HaeIII	GGCC	4 cut(s)	66, 75, 158, 394
HapII	CCGG	2 cut(s)	72, 181
HgaI	GACGC	2 cut(s)	109, 138
HhaI	GCGC	1 cut(s)	136
Hin1I	GRCGYC	1 cut(s)	101
Hin1II	CATG	5 cut(s)	64, 332, 380, 503, 729
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HinfI	GANTC	3 cut(s)	476, 521, 574
HpaII	CCGG	2 cut(s)	72, 181
HphI	GGTGA	1 cut(s)	719
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	3 cut(s)	168, 318, 357
Hpy188III	TCNNGA	2 cut(s)	181, 245
Hpy8I	GTNNAC	1 cut(s)	13
Hpy99I	CGWCG	3 cut(s)	103, 130, 154
HpyAV	CCTTC	3 cut(s)	77, 114, 343
HpyCH4III	ACNGT	3 cut(s)	310, 668, 715
HpyCH4IV	ACGT	2 cut(s)	125, 322
HpyCH4V	TGCA	4 cut(s)	332, 557, 602, 650
HpyF10VI	GCNNNNNNNGC	4 cut(s)	72, 100, 155, 449
HpyF3I	CTNAG	2 cut(s)	30, 167
HpySE526I	ACGT	2 cut(s)	125, 322
Hsp92I	GRCGYC	1 cut(s)	101
Hsp92II	CATG	5 cut(s)	64, 332, 380, 503, 729
HspAI	GCGC	1 cut(s)	134
Kpn2I	TCCGGA	1 cut(s)	180
Kzo9I	GATC	3 cut(s)	49, 163, 177
LmnI	GCTCC	3 cut(s)	229, 436, 448
LweI	GCATC	3 cut(s)	461, 611, 637
MaeI	CTAG	2 cut(s)	245, 632
MaeII	ACGT	2 cut(s)	125, 322
MaeIII	GTNAC	2 cut(s)	547, 610
MalI	GATC	3 cut(s)	51, 165, 179
MboI	GATC	3 cut(s)	49, 163, 177
MboII	GAAGA	5 cut(s)	173, 187, 289, 292, 558
MflI	RGATCY	2 cut(s)	163, 177
MhlI	GDGCHC	2 cut(s)	234, 445
MluCI	AATT	1 cut(s)	79
MlyI	GAGTC	2 cut(s)	515, 583
Mph1103I	ATGCAT	1 cut(s)	604
MroI	TCCGGA	1 cut(s)	180
MseI	TTAA	1 cut(s)	751
MslI	CAYNNNNRTG	3 cut(s)	59, 504, 582
MspI	CCGG	2 cut(s)	72, 181
MspR9I	CCNGG	3 cut(s)	72, 208, 571
MvaI	CCWGG	2 cut(s)	208, 571
MvnI	CGCG	3 cut(s)	134, 149, 270
MwoI	GCNNNNNNNGC	4 cut(s)	72, 100, 155, 449
NciI	CCSGG	1 cut(s)	72
NdeII	GATC	3 cut(s)	49, 163, 177
NheI	GCTAGC	1 cut(s)	631
NlaIII	CATG	5 cut(s)	64, 332, 380, 503, 729
NmeAIII	GCCGAG	1 cut(s)	370
NsiI	ATGCAT	1 cut(s)	604
NspI	RCATGY	2 cut(s)	380, 729
PcsI	WCGNNNNNNNCGW	1 cut(s)	107
PfeI	GAWTC	1 cut(s)	476
PfoI	TCCNGGA	1 cut(s)	569
PkrI	GCNGC	3 cut(s)	90, 93, 148
PleI	GAGTC	2 cut(s)	515, 582
PpsI	GAGTC	2 cut(s)	515, 582
Ppu21I	YACGTR	1 cut(s)	323
Psp6I	CCWGG	2 cut(s)	206, 569
PspFI	CCCAGC	1 cut(s)	22
PspGI	CCWGG	2 cut(s)	206, 569
PspPI	GGNCC	1 cut(s)	64
PsrI	GAACNNNNNNTAC	2 cut(s)	647, 679
PsuI	RGATCY	2 cut(s)	163, 177
RsaI	GTAC	2 cut(s)	341, 381
RsaNI	GTAC	2 cut(s)	340, 380
RseI	CAYNNNNRTG	3 cut(s)	59, 504, 582
SaqAI	TTAA	1 cut(s)	751
SatI	GCNGC	3 cut(s)	89, 92, 147
Sau3AI	GATC	3 cut(s)	49, 163, 177
Sau96I	GGNCC	1 cut(s)	64
ScaI	AGTACT	1 cut(s)	341
SchI	GAGTC	2 cut(s)	515, 583
ScrFI	CCNGG	3 cut(s)	72, 208, 571
SduI	GDGCHC	2 cut(s)	234, 445
SfaNI	GCATC	3 cut(s)	461, 611, 637
SfcI	CTRYAG	1 cut(s)	664
SfiI	GGCCNNNNNGGCC	1 cut(s)	72
SmiMI	CAYNNNNRTG	3 cut(s)	59, 504, 582
SmlI	CTYRAG	1 cut(s)	456
SmoI	CTYRAG	1 cut(s)	456
SnaBI	TACGTA	1 cut(s)	323
Sse9I	AATT	1 cut(s)	79
SsiI	CCGC	5 cut(s)	89, 92, 132, 147, 268
SspMI	CTAG	2 cut(s)	245, 632
StyD4I	CCNGG	3 cut(s)	70, 206, 569
TaaI	ACNGT	3 cut(s)	310, 668, 715
TaiI	ACGT	2 cut(s)	128, 325
TaqI	TCGA	2 cut(s)	48, 721
TasI	AATT	1 cut(s)	79
TatI	WGTACW	1 cut(s)	339
TauI	GCSGC	3 cut(s)	91, 94, 149
TfiI	GAWTC	1 cut(s)	476
Tru1I	TTAA	1 cut(s)	751
Tru9I	TTAA	1 cut(s)	751
TscAI	CASTG	1 cut(s)	559
TspDTI	ATGAA	1 cut(s)	693
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	1 cut(s)	559
XbaI	TCTAGA	1 cut(s)	244
XceI	RCATGY	2 cut(s)	380, 729
XspI	CTAG	2 cut(s)	245, 632
ZrmI	AGTACT	1 cut(s)	341
Zsp2I	ATGCAT	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.