Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003332.1

Orthogroup ID

OG0011657

Physical Location & Seq

Genomic Coordinates Reverse (-)

127548 .. 128802

Gene Structure 1255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

atggcggcagatcactctcaatcgggcaccacccagttgcggctgaactcgcggcggagctacgtggtccaccccgttgacattgagacgccacctctaacttccccggctcccgccacgcccgccgtgttccgggaaatcaagcatttcaagaaatgggttgtctggttgatacctgcttttgttatcatcaataccatcatgtttatcatcactatgtatgtcaacaactgccccaagaactcggtctcttgcattgccacgttcttggggaggttctcgttccagccttttaaggagaaccctcttcttggaccatcatcgtctacgttacagaagatgggtgctttagatgtgaaaaaggtggttgatgatcaccaggggtggcttctcatcacttgcaattggctacatggtggagttttccatttgttggcgaatatgctgagtcttttggttattgggtaccggctagagcaagaatttggttttgtgcggattggtttgctatatgtcatctctggacttagaaatcgaaaccgagtatatatatactctcagttcggaccccagcagctcaagtacatgacggtcctcagagactcctctgcattcttaagcttctcgctcttggcctccttaaaagcacttccctttgaatcaatagttacagagaaccgcctcgtctgtaacttcgaagacgacgaagaagaagaagctgaggaagctgaatccctgagagacttaacggtcgactcgccacttagcttgggggcctggtctttcatcagcctcatccctgcctggtacaacactctgctcgcgtacctcaagctcatgcccagaatatttttacaaccaaaacaccaaactcaaactttgaaggattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0005911 GO:0006928 GO:0008150 GO:0008283 GO:0009506 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030054 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0055044 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0071944 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

296

Amino Acids

33.66

Weight (kDa)

7.71

Isoelectric Point (pI)

47.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	126 - 179	1.5e-15	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53780 AT3G53780 AT3G53780
fragaria_vesca	FvH4_6g13560
malus_domestica	MD04G1130000.v1.1 MD12G1143100.v1.1
prunus_persica	Prupe.6G256700_v2.0.a1
pyrus_communis	pycom04g11830 pycom12g13780
rosa_chinensis	RchiOBHm_Chr3g0466421
rosa_laevigata	RLG00000024575
rosa_multiflora	Rmu_co8379997.1_g000002 Rmu_sc0003332.1_g000027 Rmu_sc0003480.1_g000001
rosa_roxburghii	Rroxscaffold_6G00414480
rosa_samantha	Rh3AG128300 Rh3BG149600 Rh3DG150300
rosa_wichuraiana	Rw3G012120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	749
Acc36I	ACCTGC	1 cut(s)	184
Acc65I	GGTACC	1 cut(s)	465
AccB1I	GGYRCC	2 cut(s)	26, 465
AccB7I	CCANNNNNTGG	1 cut(s)	433
AccI	GTMKAC	2 cut(s)	326, 753
AccII	CGCG	2 cut(s)	52, 824
AciI	CCGC	8 cut(s)	5, 40, 52, 55, 114, 123, 496, 679
AcsI	RAATTY	1 cut(s)	482
AcyI	GRCGYC	1 cut(s)	89
AfaI	GTAC	4 cut(s)	467, 584, 809, 827
AfiI	CCNNNNNNNGG	4 cut(s)	39, 132, 311, 433
AflII	CTTAAG	1 cut(s)	616
AgsI	TTSAA	3 cut(s)	151, 659, 883
AjnI	CCWGG	3 cut(s)	378, 776, 803
AluBI	AGCT	7 cut(s)	60, 577, 621, 719, 728, 768, 835
AluI	AGCT	7 cut(s)	60, 577, 621, 719, 728, 768, 835
Alw26I	GTCTC	4 cut(s)	80, 253, 594, 735
AoxI	GGCC	2 cut(s)	633, 774
ApeKI	GCWGC	1 cut(s)	574
ApoI	RAATTY	1 cut(s)	482
Asp718I	GGTACC	1 cut(s)	465
AspS9I	GGNCC	5 cut(s)	67, 314, 566, 592, 774
AsuC2I	CCSGG	2 cut(s)	107, 134
AsuHPI	GGTGA	1 cut(s)	368
AsuII	TTCGAA	1 cut(s)	696
AvaII	GGWCC	4 cut(s)	67, 314, 566, 592
BaeGI	GKGCMC	1 cut(s)	29
BanI	GGYRCC	2 cut(s)	26, 465
BbsI	GAAGAC	1 cut(s)	705
BbvCI	CCTCAGC	1 cut(s)	720
BbvI	GCAGC	1 cut(s)	586
BccI	CCATC	3 cut(s)	206, 325, 334
BceAI	ACGGC	1 cut(s)	110
BciT130I	CCWGG	3 cut(s)	380, 778, 805
BclI	TGATCA	1 cut(s)	373
BcnI	CCSGG	2 cut(s)	107, 134
BcoDI	GTCTC	4 cut(s)	80, 253, 594, 735
BfaI	CTAG	1 cut(s)	473
BfrI	CTTAAG	1 cut(s)	616
BfuAI	ACCTGC	1 cut(s)	184
BisI	GCNGC	4 cut(s)	6, 41, 53, 575
BlsI	GCNGC	4 cut(s)	7, 42, 54, 576
Bme1390I	CCNGG	5 cut(s)	107, 134, 380, 778, 805
Bme18I	GGWCC	4 cut(s)	67, 314, 566, 592
BmgT120I	GGNCC	5 cut(s)	67, 314, 566, 592, 774
BmiI	GGNNCC	5 cut(s)	28, 111, 467, 568, 775
BmrFI	CCNGG	5 cut(s)	107, 134, 380, 778, 805
BmrI	ACTGGG	1 cut(s)	28
BmuI	ACTGGG	1 cut(s)	28
BpiI	GAAGAC	1 cut(s)	705
Bpu10I	CCTNAGC	1 cut(s)	720
Bpu14I	TTCGAA	1 cut(s)	696
BpuEI	CTTGAG	2 cut(s)	563, 815
BpuMI	CCSGG	2 cut(s)	107, 134
BsaAI	YACGTR	1 cut(s)	64
BsaHI	GRCGYC	1 cut(s)	89
BsaI	GGTCTC	1 cut(s)	253
BsaJI	CCNNGG	2 cut(s)	105, 379
Bsc4I	CCNNNNNNNGG	4 cut(s)	39, 132, 311, 433
Bse118I	RCCGGY	1 cut(s)	468
Bse1I	ACTGG	1 cut(s)	34
Bse3DI	GCAATG	1 cut(s)	255
BseBI	CCWGG	3 cut(s)	380, 778, 805
BseDI	CCNNGG	2 cut(s)	105, 379
BseGI	GGATG	1 cut(s)	795
BseLI	CCNNNNNNNGG	4 cut(s)	39, 132, 311, 433
BseMI	GCAATG	1 cut(s)	255
BseMII	CTCAG	5 cut(s)	437, 572, 610, 711, 728
BseNI	ACTGG	1 cut(s)	34
BseRI	GAGGAG	1 cut(s)	595
BseSI	GKGCMC	1 cut(s)	29
BseXI	GCAGC	1 cut(s)	586
BseYI	CCCAGC	1 cut(s)	570
Bsh1236I	CGCG	2 cut(s)	52, 824
Bsh1285I	CGRYCG	1 cut(s)	753
BshFI	GGCC	2 cut(s)	635, 776
BshNI	GGYRCC	2 cut(s)	26, 465
BsiEI	CGRYCG	1 cut(s)	753
BsiSI	CCGG	3 cut(s)	107, 133, 469
BslI	CCNNNNNNNGG	4 cut(s)	39, 132, 311, 433
BsmAI	GTCTC	4 cut(s)	80, 253, 594, 735
BsmBI	CGTCTC	1 cut(s)	80
BsmI	GAATGC	1 cut(s)	611
BsnI	GGCC	2 cut(s)	635, 776
Bso31I	GGTCTC	1 cut(s)	253
Bsp119I	TTCGAA	1 cut(s)	696
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp143I	GATC	2 cut(s)	10, 373
BspACI	CCGC	8 cut(s)	5, 40, 52, 55, 114, 123, 496, 679
BspANI	GGCC	2 cut(s)	635, 776
BspCNI	CTCAG	5 cut(s)	438, 571, 609, 712, 729
BspFNI	CGCG	2 cut(s)	52, 824
BspLI	GGNNCC	5 cut(s)	28, 111, 467, 568, 775
BspMI	ACCTGC	1 cut(s)	184
BspT104I	TTCGAA	1 cut(s)	696
BspT107I	GGYRCC	2 cut(s)	26, 465
BspTI	CTTAAG	1 cut(s)	616
BspTNI	GGTCTC	1 cut(s)	253
BsrDI	GCAATG	1 cut(s)	255
BsrFI	RCCGGY	1 cut(s)	468
BsrI	ACTGG	1 cut(s)	34
BssAI	RCCGGY	1 cut(s)	468
BssECI	CCNNGG	2 cut(s)	105, 379
BssMI	GATC	2 cut(s)	10, 373
BssNI	GRCGYC	1 cut(s)	89
Bst2UI	CCWGG	3 cut(s)	380, 778, 805
Bst4CI	ACNGT	2 cut(s)	592, 751
Bst6I	CTCTTC	1 cut(s)	312
BstACI	GRCGYC	1 cut(s)	89
BstAFI	CTTAAG	1 cut(s)	616
BstBAI	YACGTR	1 cut(s)	64
BstBI	TTCGAA	1 cut(s)	696
BstC8I	GCNNGC	2 cut(s)	123, 822
BstDEI	CTNAG	7 cut(s)	446, 527, 558, 596, 720, 737, 764
BstF5I	GGATG	1 cut(s)	795
BstFNI	CGCG	2 cut(s)	52, 824
BstKTI	GATC	2 cut(s)	13, 376
BstMAI	GTCTC	4 cut(s)	80, 253, 594, 735
BstMBI	GATC	2 cut(s)	10, 373
BstMCI	CGRYCG	1 cut(s)	753
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 122, 725
BstNI	CCWGG	3 cut(s)	380, 778, 805
BstSCI	CCNGG	5 cut(s)	105, 132, 378, 776, 803
BstSLI	GKGCMC	1 cut(s)	29
BstUI	CGCG	2 cut(s)	52, 824
BstV1I	GCAGC	1 cut(s)	586
BstV2I	GAAGAC	1 cut(s)	705
BstXI	CCANNNNNNTGG	1 cut(s)	268
BsuRI	GGCC	2 cut(s)	635, 776
BtsCI	GGATG	1 cut(s)	795
BveI	ACCTGC	1 cut(s)	184
Cac8I	GCNNGC	2 cut(s)	123, 822
Cfr10I	RCCGGY	1 cut(s)	468
Cfr13I	GGNCC	5 cut(s)	67, 314, 566, 592, 774
CseI	GACGC	1 cut(s)	97
Csp6I	GTAC	4 cut(s)	466, 583, 808, 826
CspCI	CAANNNNNGTGG	2 cut(s)	750, 785
CviAII	CATG	4 cut(s)	202, 413, 586, 838
CviQI	GTAC	4 cut(s)	466, 583, 808, 826
DdeI	CTNAG	7 cut(s)	446, 527, 558, 596, 720, 737, 764
DpnI	GATC	2 cut(s)	12, 375
DpnII	GATC	2 cut(s)	10, 373
DrdI	GACNNNNNNGTC	1 cut(s)	749
DseDI	GACNNNNNNGTC	1 cut(s)	749
Eam1104I	CTCTTC	1 cut(s)	312
EarI	CTCTTC	1 cut(s)	312
EciI	GGCGGA	1 cut(s)	70
Eco31I	GGTCTC	1 cut(s)	253
Eco47I	GGWCC	4 cut(s)	67, 314, 566, 592
EcoO109I	RGGNCCY	1 cut(s)	774
EcoRII	CCWGG	3 cut(s)	378, 776, 803
Esp3I	CGTCTC	1 cut(s)	80
FaeI	CATG	4 cut(s)	205, 416, 589, 841
FatI	CATG	4 cut(s)	201, 412, 585, 837
FauI	CCCGC	2 cut(s)	121, 130
FbaI	TGATCA	1 cut(s)	373
FblI	GTMKAC	2 cut(s)	326, 753
Fnu4HI	GCNGC	4 cut(s)	6, 41, 53, 575
FokI	GGATG	1 cut(s)	782
Fsp4HI	GCNGC	4 cut(s)	6, 41, 53, 575
FspBI	CTAG	1 cut(s)	473
GluI	GCNGC	4 cut(s)	6, 41, 53, 575
GsaI	CCCAGC	1 cut(s)	574
HaeIII	GGCC	2 cut(s)	635, 776
HapII	CCGG	3 cut(s)	107, 133, 469
HgaI	GACGC	1 cut(s)	97
Hin1I	GRCGYC	1 cut(s)	89
Hin1II	CATG	4 cut(s)	205, 416, 589, 841
HincII	GTYRAC	3 cut(s)	79, 226, 754
HindII	GTYRAC	3 cut(s)	79, 226, 754
HindIII	AAGCTT	1 cut(s)	619
HinfI	GANTC	5 cut(s)	448, 602, 659, 731, 755
HpaII	CCGG	3 cut(s)	107, 133, 469
HphI	GGTGA	1 cut(s)	368
Hpy166II	GTNNAC	5 cut(s)	70, 79, 226, 327, 754
Hpy188I	TCNGA	2 cut(s)	566, 599
Hpy188III	TCNNGA	2 cut(s)	151, 522
Hpy8I	GTNNAC	5 cut(s)	70, 79, 226, 327, 754
Hpy99I	CGWCG	1 cut(s)	707
HpyAV	CCTTC	1 cut(s)	877
HpyCH4III	ACNGT	2 cut(s)	592, 751
HpyCH4IV	ACGT	3 cut(s)	63, 263, 329
HpyCH4V	TGCA	3 cut(s)	255, 402, 611
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 122, 725
HpyF3I	CTNAG	7 cut(s)	446, 527, 558, 596, 720, 737, 764
HpySE526I	ACGT	3 cut(s)	63, 263, 329
Hsp92I	GRCGYC	1 cut(s)	89
Hsp92II	CATG	4 cut(s)	205, 416, 589, 841
KpnI	GGTACC	1 cut(s)	469
Ksp22I	TGATCA	1 cut(s)	373
Kzo9I	GATC	2 cut(s)	10, 373
LmnI	GCTCC	2 cut(s)	57, 115
Lsp1109I	GCAGC	1 cut(s)	586
MaeI	CTAG	1 cut(s)	473
MaeII	ACGT	3 cut(s)	63, 263, 329
MaeIII	GTNAC	3 cut(s)	330, 667, 689
MalI	GATC	2 cut(s)	12, 375
MboI	GATC	2 cut(s)	10, 373
MboII	GAAGA	6 cut(s)	299, 349, 710, 719, 722, 725
MfeI	CAATTG	1 cut(s)	403
MhlI	GDGCHC	1 cut(s)	29
MluCI	AATT	2 cut(s)	403, 482
MlyI	GAGTC	3 cut(s)	457, 596, 749
MseI	TTAA	5 cut(s)	294, 617, 641, 746, 889
MslI	CAYNNNNRTG	1 cut(s)	215
MspCI	CTTAAG	1 cut(s)	616
MspI	CCGG	3 cut(s)	107, 133, 469
MspR9I	CCNGG	5 cut(s)	107, 134, 380, 778, 805
MunI	CAATTG	1 cut(s)	403
Mva1269I	GAATGC	1 cut(s)	611
MvaI	CCWGG	3 cut(s)	380, 778, 805
MvnI	CGCG	2 cut(s)	52, 824
MwoI	GCNNNNNNNGC	3 cut(s)	49, 122, 725
NciI	CCSGG	2 cut(s)	107, 134
NdeII	GATC	2 cut(s)	10, 373
NlaIII	CATG	4 cut(s)	205, 416, 589, 841
NlaIV	GGNNCC	5 cut(s)	28, 111, 467, 568, 775
NspV	TTCGAA	1 cut(s)	696
PcsI	WCGNNNNNNNCGW	1 cut(s)	702
PctI	GAATGC	1 cut(s)	611
PfeI	GAWTC	2 cut(s)	659, 731
PflMI	CCANNNNNTGG	1 cut(s)	433
PfoI	TCCNGGA	1 cut(s)	132
PkrI	GCNGC	4 cut(s)	7, 42, 54, 576
PleI	GAGTC	3 cut(s)	456, 596, 749
PpsI	GAGTC	3 cut(s)	456, 596, 749
Ppu21I	YACGTR	1 cut(s)	64
Psp6I	CCWGG	3 cut(s)	378, 776, 803
PspFI	CCCAGC	1 cut(s)	570
PspGI	CCWGG	3 cut(s)	378, 776, 803
PspN4I	GGNNCC	5 cut(s)	28, 111, 467, 568, 775
PspPI	GGNCC	5 cut(s)	67, 314, 566, 592, 774
RsaI	GTAC	4 cut(s)	467, 584, 809, 827
RsaNI	GTAC	4 cut(s)	466, 583, 808, 826
RseI	CAYNNNNRTG	1 cut(s)	215
SalI	GTCGAC	1 cut(s)	752
SaqAI	TTAA	5 cut(s)	294, 617, 641, 746, 889
SatI	GCNGC	4 cut(s)	6, 41, 53, 575
Sau3AI	GATC	2 cut(s)	10, 373
Sau96I	GGNCC	5 cut(s)	67, 314, 566, 592, 774
SchI	GAGTC	3 cut(s)	457, 596, 749
ScrFI	CCNGG	5 cut(s)	107, 134, 380, 778, 805
SduI	GDGCHC	1 cut(s)	29
SfuI	TTCGAA	1 cut(s)	696
SinI	GGWCC	4 cut(s)	67, 314, 566, 592
SmiMI	CAYNNNNRTG	1 cut(s)	215
SmlI	CTYRAG	3 cut(s)	578, 616, 830
SmoI	CTYRAG	3 cut(s)	578, 616, 830
Sse9I	AATT	2 cut(s)	403, 482
SsiI	CCGC	8 cut(s)	5, 40, 52, 55, 114, 123, 496, 679
SspI	AATATT	1 cut(s)	849
SspMI	CTAG	1 cut(s)	473
StyD4I	CCNGG	5 cut(s)	105, 132, 378, 776, 803
TaaI	ACNGT	2 cut(s)	592, 751
TaiI	ACGT	3 cut(s)	66, 266, 332
TaqI	TCGA	3 cut(s)	535, 696, 753
TaqII	GACCGA	1 cut(s)	235
TasI	AATT	2 cut(s)	403, 482
TatI	WGTACW	1 cut(s)	582
TauI	GCSGC	3 cut(s)	8, 43, 55
TfiI	GAWTC	2 cut(s)	659, 731
Tru1I	TTAA	5 cut(s)	294, 617, 641, 746, 889
Tru9I	TTAA	5 cut(s)	294, 617, 641, 746, 889
TseI	GCWGC	1 cut(s)	574
TspDTI	ATGAA	1 cut(s)	775
Van91I	CCANNNNNTGG	1 cut(s)	433
Vha464I	CTTAAG	1 cut(s)	616
VpaK11BI	GGWCC	4 cut(s)	67, 314, 566, 592
XapI	RAATTY	1 cut(s)	482
XmiI	GTMKAC	2 cut(s)	326, 753
XspI	CTAG	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.