Rmu_sc0003368.1_g000003

BES1 BZR1 homolog protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003368.1
OG0009842
Physical Location & Seq
Forward (+)
14931 .. 18232
3302 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1002 bp
atgatagagacggttacgggaccggagcaccgaatgtggacacgtgtcgaggagccgaacggttttgtcagagtgacggttgcgaggaatgagtataacgcttctgggattaggccattagggggaacgtgttggggtttgggtcaacttggtagcatcttcgagaagtgcccatgtgcatgcagatccgatcggattcgatcaccaaacctcttcgccaaccgcaatattccccgatcgggatgcaagcctgttgaacgcaaggacattgtggacggatcaacagctgctagcccatgctcatcttaccacccaagtaactatgcttcctacaatccaagccctggctcatcctccttccctagcccagcatcatcttcctatgctgctaatcagaatgttgatggaagttcccttatcccatggctaaaacatctctcatccggatcctcttcagcctcctcttccaagctaccaaatatttacatccatggtggttctatcagtgctcctgtcactcctccattgagctctccaacagccagaacaccccgaatgaacacggactgggacgaacagtctgcccgcccaggatggggtgggcagcagtactccttcctgccatcttctactccaccaagccctggccggcagattattcctgatcccgaatggttttctgggcttcggattccccatggaccaacttctccaacatttagcctcgtctcttcaaacccatttgggttcaaggaagaggctttagctggtggaggctctcgaatgtggactcctggacagagtgggacatgctctcctgccattgcagcaggctctgatcacactgcggacattccaatgtctgaggtgatttctgacgagtttgcattcggatcatgcaacacagcagggctggttaaggcatgggaaggcgagaggattcatgaagaatccggatctgatgatttagagctcactcttgggtgctcaaaaaccaggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BES1_N

Protein Analysis

333

Amino Acids

35.4

Weight (kDa)

6.18

Isoelectric Point (pI)

57.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BES1_N PF05687 79 - 146 2e-08 BES1/BZR1 plant transcription factor, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 344, 644
AccIII TCCGGA 2 cut(s) 443, 953
AciI CCGC 3 cut(s) 223, 586, 848
AclWI GGATC 7 cut(s) 180, 286, 441, 454, 659, 901, 964
AcoI YGGCCR 1 cut(s) 646
AcuI CTGAAG 1 cut(s) 438
AcvI CACGTG 1 cut(s) 44
AfaI GTAC 1 cut(s) 611
AfiI CCNNNNNNNGG 6 cut(s) 122, 239, 344, 595, 596, 644
AflIII ACRYGT 3 cut(s) 41, 43, 128
AgsI TTSAA 3 cut(s) 257, 735, 751
AhdI GACNNNNNGTC 1 cut(s) 577
AjnI CCWGG 5 cut(s) 343, 589, 643, 793, 995
AluBI AGCT 5 cut(s) 287, 472, 531, 767, 973
AluI AGCT 5 cut(s) 287, 472, 531, 767, 973
Alw21I GWGCWC 5 cut(s) 30, 511, 533, 975, 989
Alw26I GTCTC 2 cut(s) 2, 733
AlwI GGATC 7 cut(s) 180, 286, 441, 454, 659, 901, 964
AlwNI CAGNNNCTG 1 cut(s) 836
Aor13HI TCCGGA 2 cut(s) 443, 953
AoxI GGCC 2 cut(s) 113, 646
ApeKI GCWGC 4 cut(s) 287, 386, 604, 827
AspS9I GGNCC 2 cut(s) 20, 701
AsuHPI GGTGA 2 cut(s) 195, 880
AsuNHI GCTAGC 1 cut(s) 290
AvaII GGWCC 2 cut(s) 20, 701
BaeGI GKGCMC 1 cut(s) 173
BamHI GGATCC 1 cut(s) 446
BanII GRGCYC 2 cut(s) 533, 975
BarI GAAGNNNNNNTAC 2 cut(s) 310, 342
BbrPI CACGTG 1 cut(s) 44
Bbv12I GWGCWC 5 cut(s) 30, 511, 533, 975, 989
BbvI GCAGC 4 cut(s) 274, 373, 616, 839
BccI CCATC 3 cut(s) 398, 588, 631
BcgI CGANNNNNNTGC 4 cut(s) 225, 259, 563, 597
BciT130I CCWGG 5 cut(s) 345, 591, 645, 795, 997
BclI TGATCA 1 cut(s) 838
BcoDI GTCTC 2 cut(s) 2, 733
BfaI CTAG 2 cut(s) 291, 363
BisI GCNGC 4 cut(s) 288, 387, 605, 828
BlsI GCNGC 4 cut(s) 289, 388, 606, 829
BmcAI AGTACT 1 cut(s) 611
Bme1390I CCNGG 5 cut(s) 345, 591, 645, 795, 997
Bme18I GGWCC 2 cut(s) 20, 701
BmeRI GACNNNNNGTC 1 cut(s) 577
BmgT120I GGNCC 2 cut(s) 20, 701
BmiI GGNNCC 3 cut(s) 21, 54, 448
BmrFI CCNGG 5 cut(s) 345, 591, 645, 795, 997
BmrI ACTGGG 1 cut(s) 577
BmsI GCATC 3 cut(s) 165, 233, 380
BmtI GCTAGC 1 cut(s) 294
BmuI ACTGGG 1 cut(s) 577
BoxI GACNNNNGTC 1 cut(s) 44
BsaAI YACGTR 1 cut(s) 44
BsaJI CCNNGG 6 cut(s) 343, 422, 490, 589, 643, 697
BsaWI WCCGGW 3 cut(s) 22, 443, 953
BsaXI ACNNNNNCTCC 2 cut(s) 799, 829
Bsc4I CCNNNNNNNGG 6 cut(s) 122, 239, 344, 595, 596, 644
Bse118I RCCGGY 1 cut(s) 648
Bse1I ACTGG 1 cut(s) 572
Bse3DI GCAATG 1 cut(s) 822
BseAI TCCGGA 2 cut(s) 443, 953
BseBI CCWGG 5 cut(s) 345, 591, 645, 795, 997
BseDI CCNNGG 6 cut(s) 343, 422, 490, 589, 643, 697
BseGI GGATG 5 cut(s) 248, 350, 440, 486, 599
BseLI CCNNNNNNNGG 6 cut(s) 122, 239, 344, 595, 596, 644
BseMI GCAATG 1 cut(s) 822
BseMII CTCAG 1 cut(s) 855
BseNI ACTGG 1 cut(s) 572
BseRI GAGGAG 3 cut(s) 65, 451, 510
BseSI GKGCMC 1 cut(s) 173
BseXI GCAGC 4 cut(s) 274, 373, 616, 839
BseYI CCCAGC 1 cut(s) 367
Bsh1285I CGRYCG 2 cut(s) 193, 239
BshFI GGCC 2 cut(s) 115, 648
BsiEI CGRYCG 2 cut(s) 193, 239
BsiHKAI GWGCWC 5 cut(s) 30, 511, 533, 975, 989
BsiSI CCGG 4 cut(s) 23, 444, 649, 954
BslFI GGGAC 3 cut(s) 33, 584, 820
BslI CCNNNNNNNGG 6 cut(s) 122, 239, 344, 595, 596, 644
BsmAI GTCTC 2 cut(s) 2, 733
BsmBI CGTCTC 2 cut(s) 2, 733
BsmFI GGGAC 3 cut(s) 33, 584, 820
BsmI GAATGC 1 cut(s) 887
BsnI GGCC 2 cut(s) 115, 648
Bsp1286I GDGCHC 6 cut(s) 30, 173, 511, 533, 975, 989
Bsp13I TCCGGA 2 cut(s) 443, 953
Bsp19I CCATGG 3 cut(s) 422, 490, 697
BspACI CCGC 3 cut(s) 223, 586, 848
BspANI GGCC 2 cut(s) 115, 648
BspCNI CTCAG 1 cut(s) 856
BspEI TCCGGA 2 cut(s) 443, 953
BspHI TCATGA 1 cut(s) 943
BspLI GGNNCC 3 cut(s) 21, 54, 448
BspOI GCTAGC 1 cut(s) 294
BspPI GGATC 7 cut(s) 180, 286, 441, 454, 659, 901, 964
BsrDI GCAATG 1 cut(s) 822
BsrFI RCCGGY 1 cut(s) 648
BsrI ACTGG 1 cut(s) 572
BssAI RCCGGY 1 cut(s) 648
BssECI CCNNGG 6 cut(s) 343, 422, 490, 589, 643, 697
BssT1I CCWWGG 3 cut(s) 422, 490, 697
Bst2UI CCWGG 5 cut(s) 345, 591, 645, 795, 997
Bst4CI ACNGT 4 cut(s) 13, 62, 79, 579
Bst6I CTCTTC 5 cut(s) 218, 457, 469, 736, 750
BstBAI YACGTR 1 cut(s) 44
BstC8I GCNNGC 6 cut(s) 181, 248, 292, 586, 650, 832
BstDEI CTNAG 1 cut(s) 864
BstDSI CCRYGG 3 cut(s) 422, 490, 697
BstF5I GGATG 5 cut(s) 248, 350, 440, 486, 599
BstMAI GTCTC 2 cut(s) 2, 733
BstMCI CGRYCG 2 cut(s) 193, 239
BstMWI GCNNNNNNNGC 1 cut(s) 827
BstNI CCWGG 5 cut(s) 345, 591, 645, 795, 997
BstNSI RCATGY 2 cut(s) 183, 813
BstPAI GACNNNNGTC 1 cut(s) 44
BstSCI CCNGG 5 cut(s) 343, 589, 643, 793, 995
BstSLI GKGCMC 1 cut(s) 173
BstV1I GCAGC 4 cut(s) 274, 373, 616, 839
BstX2I RGATCY 3 cut(s) 185, 446, 956
BstYI RGATCY 3 cut(s) 185, 446, 956
BsuRI GGCC 2 cut(s) 115, 648
BtgI CCRYGG 3 cut(s) 422, 490, 697
BtsCI GGATG 5 cut(s) 248, 350, 440, 486, 599
BtsI GCAGTG 1 cut(s) 843
BtsIMutI CAGTG 2 cut(s) 511, 843
Cac8I GCNNGC 6 cut(s) 181, 248, 292, 586, 650, 832
CaiI CAGNNNCTG 1 cut(s) 836
CciI TCATGA 1 cut(s) 943
Cfr10I RCCGGY 1 cut(s) 648
Cfr13I GGNCC 2 cut(s) 20, 701
CsiI ACCWGGT 1 cut(s) 995
Csp6I GTAC 1 cut(s) 610
CviQI GTAC 1 cut(s) 610
DdeI CTNAG 1 cut(s) 864
DriI GACNNNNNGTC 1 cut(s) 577
EaeI YGGCCR 1 cut(s) 646
Eam1104I CTCTTC 5 cut(s) 218, 457, 469, 736, 750
Eam1105I GACNNNNNGTC 1 cut(s) 577
EarI CTCTTC 5 cut(s) 218, 457, 469, 736, 750
Ecl136II GAGCTC 2 cut(s) 531, 973
Eco130I CCWWGG 3 cut(s) 422, 490, 697
Eco24I GRGCYC 2 cut(s) 533, 975
Eco47I GGWCC 2 cut(s) 20, 701
Eco53kI GAGCTC 2 cut(s) 531, 973
Eco57I CTGAAG 1 cut(s) 438
Eco72I CACGTG 1 cut(s) 44
EcoICRI GAGCTC 2 cut(s) 531, 973
EcoRII CCWGG 5 cut(s) 343, 589, 643, 793, 995
EcoT14I CCWWGG 3 cut(s) 422, 490, 697
EcoT38I GRGCYC 2 cut(s) 533, 975
ErhI CCWWGG 3 cut(s) 422, 490, 697
Esp3I CGTCTC 2 cut(s) 2, 733
FaqI GGGAC 3 cut(s) 33, 584, 820
FauI CCCGC 1 cut(s) 593
FbaI TGATCA 1 cut(s) 838
Fnu4HI GCNGC 4 cut(s) 288, 387, 605, 828
FokI GGATG 5 cut(s) 255, 337, 427, 473, 606
FriOI GRGCYC 2 cut(s) 533, 975
Fsp4HI GCNGC 4 cut(s) 288, 387, 605, 828
FspBI CTAG 2 cut(s) 291, 363
GluI GCNGC 4 cut(s) 288, 387, 605, 828
GsaI CCCAGC 1 cut(s) 371
HaeIII GGCC 2 cut(s) 115, 648
HapII CCGG 4 cut(s) 23, 444, 649, 954
HincII GTYRAC 1 cut(s) 146
HindII GTYRAC 1 cut(s) 146
HinfI GANTC 5 cut(s) 196, 691, 790, 940, 950
HpaII CCGG 4 cut(s) 23, 444, 649, 954
HphI GGTGA 2 cut(s) 195, 880
Hpy166II GTNNAC 4 cut(s) 39, 146, 274, 789
Hpy188III TCNNGA 8 cut(s) 163, 240, 444, 662, 668, 780, 944, 954
Hpy8I GTNNAC 4 cut(s) 39, 146, 274, 789
HpyAV CCTTC 3 cut(s) 367, 625, 923
HpyCH4III ACNGT 4 cut(s) 13, 62, 79, 579
HpyCH4IV ACGT 2 cut(s) 43, 128
HpyCH4V TGCA 6 cut(s) 179, 183, 246, 827, 887, 900
HpyF10VI GCNNNNNNNGC 1 cut(s) 827
HpyF3I CTNAG 1 cut(s) 864
HpySE526I ACGT 2 cut(s) 43, 128
Kpn2I TCCGGA 2 cut(s) 443, 953
KroI GCCGGC 1 cut(s) 648
KroNI GCCGGC 1 cut(s) 650
Ksp22I TGATCA 1 cut(s) 838
LmnI GCTCC 3 cut(s) 25, 52, 514
Lsp1109I GCAGC 4 cut(s) 274, 373, 616, 839
LweI GCATC 3 cut(s) 165, 233, 380
MabI ACCWGGT 1 cut(s) 995
MaeI CTAG 2 cut(s) 291, 363
MaeII ACGT 2 cut(s) 43, 128
MaeIII GTNAC 4 cut(s) 13, 73, 317, 514
MboII GAAGA 9 cut(s) 151, 205, 369, 444, 456, 618, 723, 767, 959
MflI RGATCY 3 cut(s) 185, 446, 956
MhlI GDGCHC 6 cut(s) 30, 173, 511, 533, 975, 989
MlyI GAGTC 1 cut(s) 784
MmeI TCCRAC 2 cut(s) 560, 737
MroI TCCGGA 2 cut(s) 443, 953
MroNI GCCGGC 1 cut(s) 648
MseI TTAA 1 cut(s) 918
MslI CAYNNNNRTG 2 cut(s) 178, 857
MspA1I CMGCKG 1 cut(s) 287
MspI CCGG 4 cut(s) 23, 444, 649, 954
MspR9I CCNGG 5 cut(s) 345, 591, 645, 795, 997
Mva1269I GAATGC 1 cut(s) 887
MvaI CCWGG 5 cut(s) 345, 591, 645, 795, 997
MwoI GCNNNNNNNGC 1 cut(s) 827
NaeI GCCGGC 1 cut(s) 650
NcoI CCATGG 3 cut(s) 422, 490, 697
NgoMIV GCCGGC 1 cut(s) 648
NheI GCTAGC 1 cut(s) 290
NlaIV GGNNCC 3 cut(s) 21, 54, 448
NmuCI GTSAC 2 cut(s) 73, 514
NspI RCATGY 2 cut(s) 183, 813
PaeI GCATGC 1 cut(s) 183
PagI TCATGA 1 cut(s) 943
PctI GAATGC 1 cut(s) 887
PdiI GCCGGC 1 cut(s) 650
PfeI GAWTC 4 cut(s) 196, 691, 940, 950
PflMI CCANNNNNTGG 2 cut(s) 344, 644
PfoI TCCNGGA 1 cut(s) 793
PkrI GCNGC 4 cut(s) 289, 388, 606, 829
Ple19I CGATCG 2 cut(s) 193, 239
PleI GAGTC 1 cut(s) 784
PmaCI CACGTG 1 cut(s) 44
PmlI CACGTG 1 cut(s) 44
PpsI GAGTC 1 cut(s) 784
Ppu21I YACGTR 1 cut(s) 44
PshAI GACNNNNGTC 1 cut(s) 44
Psp124BI GAGCTC 2 cut(s) 533, 975
Psp6I CCWGG 5 cut(s) 343, 589, 643, 793, 995
PspCI CACGTG 1 cut(s) 44
PspFI CCCAGC 1 cut(s) 367
PspGI CCWGG 5 cut(s) 343, 589, 643, 793, 995
PspN4I GGNNCC 3 cut(s) 21, 54, 448
PspPI GGNCC 2 cut(s) 20, 701
PstNI CAGNNNCTG 1 cut(s) 836
PsuI RGATCY 3 cut(s) 185, 446, 956
PvuI CGATCG 2 cut(s) 193, 239
PvuII CAGCTG 1 cut(s) 287
RsaI GTAC 1 cut(s) 611
RsaNI GTAC 1 cut(s) 610
RseI CAYNNNNRTG 2 cut(s) 178, 857
SacI GAGCTC 2 cut(s) 533, 975
SaqAI TTAA 1 cut(s) 918
SatI GCNGC 4 cut(s) 288, 387, 605, 828
Sau96I GGNCC 2 cut(s) 20, 701
ScaI AGTACT 1 cut(s) 611
SchI GAGTC 1 cut(s) 784
ScrFI CCNGG 5 cut(s) 345, 591, 645, 795, 997
SduI GDGCHC 6 cut(s) 30, 173, 511, 533, 975, 989
SexAI ACCWGGT 1 cut(s) 995
SfaNI GCATC 3 cut(s) 165, 233, 380
SinI GGWCC 2 cut(s) 20, 701
SmiMI CAYNNNNRTG 2 cut(s) 178, 857
SphI GCATGC 1 cut(s) 183
SsiI CCGC 3 cut(s) 223, 586, 848
SspI AATATT 2 cut(s) 229, 481
SspMI CTAG 2 cut(s) 291, 363
SstI GAGCTC 2 cut(s) 533, 975
StyD4I CCNGG 5 cut(s) 343, 589, 643, 793, 995
StyI CCWWGG 3 cut(s) 422, 490, 697
TaaI ACNGT 4 cut(s) 13, 62, 79, 579
TaiI ACGT 2 cut(s) 46, 131
TaqI TCGA 4 cut(s) 48, 162, 199, 781
TatI WGTACW 1 cut(s) 609
TfiI GAWTC 4 cut(s) 196, 691, 940, 950
Tru1I TTAA 1 cut(s) 918
Tru9I TTAA 1 cut(s) 918
TscAI CASTG 2 cut(s) 511, 850
TseFI GTSAC 2 cut(s) 73, 514
TseI GCWGC 4 cut(s) 287, 386, 604, 827
Tsp45I GTSAC 2 cut(s) 73, 514
TspDTI ATGAA 3 cut(s) 572, 932, 960
TspGWI ACGGA 2 cut(s) 291, 578
TspRI CASTG 2 cut(s) 511, 850
Van91I CCANNNNNTGG 2 cut(s) 344, 644
VpaK11BI GGWCC 2 cut(s) 20, 701
XceI RCATGY 2 cut(s) 183, 813
XspI CTAG 2 cut(s) 291, 363
ZrmI AGTACT 1 cut(s) 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.