Rmu_sc0003382.1_g000007

Protein of unknown function (DUF1218)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003382.1
OG0010463
Physical Location & Seq
Forward (+)
52339 .. 53325
987 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 675 bp
atgcatggccgaagatggctggagtcgccggaaaacacctcaaaactgtcggaaactcataaactttcggccttcgcattcttcctccttactcgttgtatggatgatccaaggccacatgcgcacttgcaacgaagaggcaagtcgaacgtgaccggtgcgctgtcgtgtcgcagtggcttacagcatctgattccggagatgggagaaggaaaaggctcgagtactctggtgcaccttctggtcgtcgttctcagcttagtggcttttgggttcgccattgccgccgagagacgaagaagtgtgggtgtaatatataaggatggacgaacaaatgaaacttactgtgtctgtaactcagatgttgctactggttatggagtgggcggcttcttgtttcttctctcgggggaatccctactcatggaatcatgcttgattggtggtgctacaaaaaatgcctatcacaccaagtaccgggggatgatatatgctcagaacttttcctgtgacgcattgcgaaaaggcgtttttattgctggagcagtatttgtggttgcaacaatggtcctcaacgtctattactacatgtacttcaccaaggcaatcactcctcaggcagctcataaagcaaagcgtacaagctcaaacattgggatggctgggtatgcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1218

Protein Analysis

224

Amino Acids

24.51

Weight (kDa)

9.51

Isoelectric Point (pI)

52.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1218 PF06749 141 - 189 7.8e-09 Protein of unknown function (DUF1218)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 123
AccIII TCCGGA 1 cut(s) 196
AciI CCGC 2 cut(s) 285, 387
AclWI GGATC 1 cut(s) 101
AcoI YGGCCR 1 cut(s) 7
AfaI GTAC 4 cut(s) 226, 476, 593, 640
AfiI CCNNNNNNNGG 3 cut(s) 203, 424, 477
AflIII ACRYGT 1 cut(s) 588
AgeI ACCGGT 1 cut(s) 155
AluBI AGCT 3 cut(s) 258, 623, 645
AluI AGCT 3 cut(s) 258, 623, 645
Alw21I GWGCWC 1 cut(s) 237
Alw26I GTCTC 1 cut(s) 286
Alw44I GTGCAC 1 cut(s) 233
AlwI GGATC 1 cut(s) 101
AlwNI CAGNNNCTG 1 cut(s) 190
Ama87I CYCGRG 2 cut(s) 220, 406
Aor13HI TCCGGA 1 cut(s) 196
AoxI GGCC 3 cut(s) 7, 69, 113
ApaLI GTGCAC 1 cut(s) 233
ApeKI GCWGC 1 cut(s) 620
AsiGI ACCGGT 1 cut(s) 155
AspLEI GCGC 2 cut(s) 124, 163
AspS9I GGNCC 1 cut(s) 568
AsuC2I CCSGG 1 cut(s) 479
AsuHPI GGTGA 1 cut(s) 589
AvaI CYCGRG 2 cut(s) 220, 406
AvaII GGWCC 1 cut(s) 568
AxyI CCTNAGG 1 cut(s) 615
BaeGI GKGCMC 1 cut(s) 237
Bbv12I GWGCWC 1 cut(s) 237
BbvI GCAGC 1 cut(s) 632
BccI CCATC 4 cut(s) 9, 196, 317, 652
BcnI CCSGG 1 cut(s) 479
BcoDI GTCTC 1 cut(s) 286
BisI GCNGC 3 cut(s) 285, 388, 621
BlsI GCNGC 3 cut(s) 286, 389, 622
BmcAI AGTACT 1 cut(s) 226
Bme1390I CCNGG 1 cut(s) 479
Bme18I GGWCC 1 cut(s) 568
BmeT110I CYCGRG 2 cut(s) 220, 406
BmgT120I GGNCC 1 cut(s) 568
BmrFI CCNGG 1 cut(s) 479
BmsI GCATC 1 cut(s) 196
BpmI CTGGAG 2 cut(s) 41, 561
BpuMI CCSGG 1 cut(s) 479
BsaJI CCNNGG 3 cut(s) 110, 478, 600
BsaWI WCCGGW 2 cut(s) 155, 196
Bsc4I CCNNNNNNNGG 3 cut(s) 203, 424, 477
Bse118I RCCGGY 1 cut(s) 155
Bse1I ACTGG 1 cut(s) 376
Bse21I CCTNAGG 1 cut(s) 615
Bse3DI GCAATG 2 cut(s) 279, 515
BseAI TCCGGA 1 cut(s) 196
BseDI CCNNGG 3 cut(s) 110, 478, 600
BseGI GGATG 4 cut(s) 109, 328, 489, 663
BseLI CCNNNNNNNGG 3 cut(s) 203, 424, 477
BseMI GCAATG 2 cut(s) 279, 515
BseMII CTCAG 4 cut(s) 268, 372, 509, 629
BseNI ACTGG 1 cut(s) 376
BseRI GAGGAG 1 cut(s) 603
BseSI GKGCMC 1 cut(s) 237
BseXI GCAGC 1 cut(s) 632
BseYI CCCAGC 1 cut(s) 662
BshFI GGCC 3 cut(s) 9, 71, 115
BshTI ACCGGT 1 cut(s) 155
BsiHKAI GWGCWC 1 cut(s) 237
BsiHKCI CYCGRG 2 cut(s) 220, 406
BsiSI CCGG 4 cut(s) 29, 156, 197, 478
BslI CCNNNNNNNGG 3 cut(s) 203, 424, 477
BsmAI GTCTC 1 cut(s) 286
BsmBI CGTCTC 1 cut(s) 286
BsmI GAATGC 1 cut(s) 77
BsnI GGCC 3 cut(s) 9, 71, 115
BsoBI CYCGRG 2 cut(s) 220, 406
Bsp1286I GDGCHC 1 cut(s) 237
Bsp13I TCCGGA 1 cut(s) 196
Bsp143I GATC 1 cut(s) 106
BspACI CCGC 2 cut(s) 285, 387
BspANI GGCC 3 cut(s) 9, 71, 115
BspCNI CTCAG 4 cut(s) 267, 371, 508, 628
BspEI TCCGGA 1 cut(s) 196
BspPI GGATC 1 cut(s) 101
BsrDI GCAATG 2 cut(s) 279, 515
BsrFI RCCGGY 1 cut(s) 155
BsrI ACTGG 1 cut(s) 376
BssAI RCCGGY 1 cut(s) 155
BssECI CCNNGG 3 cut(s) 110, 478, 600
BssMI GATC 1 cut(s) 106
BssT1I CCWWGG 2 cut(s) 110, 600
Bst4CI ACNGT 2 cut(s) 48, 347
Bst6I CTCTTC 1 cut(s) 130
BstDEI CTNAG 5 cut(s) 254, 259, 358, 495, 615
BstF5I GGATG 4 cut(s) 109, 328, 489, 663
BstHHI GCGC 2 cut(s) 124, 163
BstKTI GATC 1 cut(s) 109
BstMAI GTCTC 1 cut(s) 286
BstMBI GATC 1 cut(s) 106
BstMWI GCNNNNNNNGC 5 cut(s) 25, 121, 284, 629, 668
BstNSI RCATGY 2 cut(s) 122, 592
BstSCI CCNGG 1 cut(s) 477
BstSLI GKGCMC 1 cut(s) 237
BstV1I GCAGC 1 cut(s) 632
Bsu36I CCTNAGG 1 cut(s) 615
BsuRI GGCC 3 cut(s) 9, 71, 115
BtsCI GGATG 4 cut(s) 109, 328, 489, 663
BtsI GCAGTG 1 cut(s) 181
BtsIMutI CAGTG 1 cut(s) 181
CaiI CAGNNNCTG 1 cut(s) 190
CfoI GCGC 2 cut(s) 124, 163
Cfr10I RCCGGY 1 cut(s) 155
Cfr13I GGNCC 1 cut(s) 568
CseI GACGC 1 cut(s) 521
Csp6I GTAC 4 cut(s) 225, 475, 592, 639
CspAI ACCGGT 1 cut(s) 155
CviAII CATG 5 cut(s) 5, 119, 424, 432, 589
CviQI GTAC 4 cut(s) 225, 475, 592, 639
DdeI CTNAG 5 cut(s) 254, 259, 358, 495, 615
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
EaeI YGGCCR 1 cut(s) 7
Eam1104I CTCTTC 1 cut(s) 130
EarI CTCTTC 1 cut(s) 130
Eco130I CCWWGG 2 cut(s) 110, 600
Eco47I GGWCC 1 cut(s) 568
Eco81I CCTNAGG 1 cut(s) 615
Eco88I CYCGRG 2 cut(s) 220, 406
EcoT14I CCWWGG 2 cut(s) 110, 600
EcoT22I ATGCAT 2 cut(s) 6, 673
ErhI CCWWGG 2 cut(s) 110, 600
Esp3I CGTCTC 1 cut(s) 286
FaeI CATG 5 cut(s) 8, 122, 427, 435, 592
FatI CATG 5 cut(s) 4, 118, 423, 431, 588
Fnu4HI GCNGC 3 cut(s) 285, 388, 621
FokI GGATG 4 cut(s) 116, 335, 496, 670
Fsp4HI GCNGC 3 cut(s) 285, 388, 621
FspAI RTGCGCAY 1 cut(s) 123
FspI TGCGCA 1 cut(s) 123
GlaI GCGC 2 cut(s) 123, 162
GluI GCNGC 3 cut(s) 285, 388, 621
GsaI CCCAGC 1 cut(s) 666
GsuI CTGGAG 2 cut(s) 41, 561
HaeIII GGCC 3 cut(s) 9, 71, 115
HapII CCGG 4 cut(s) 29, 156, 197, 478
HgaI GACGC 1 cut(s) 521
HhaI GCGC 2 cut(s) 124, 163
Hin1II CATG 5 cut(s) 8, 122, 427, 435, 592
Hin6I GCGC 2 cut(s) 122, 161
HinP1I GCGC 2 cut(s) 122, 161
HinfI GANTC 4 cut(s) 23, 193, 413, 428
HpaII CCGG 4 cut(s) 29, 156, 197, 478
HphI GGTGA 1 cut(s) 589
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 4 cut(s) 52, 192, 361, 498
Hpy188III TCNNGA 1 cut(s) 197
Hpy8I GTNNAC 1 cut(s) 235
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 3 cut(s) 82, 203, 248
HpyCH4III ACNGT 2 cut(s) 48, 347
HpyCH4IV ACGT 2 cut(s) 150, 576
HpyCH4V TGCA 5 cut(s) 4, 130, 235, 560, 671
HpyF10VI GCNNNNNNNGC 5 cut(s) 25, 121, 284, 629, 668
HpyF3I CTNAG 5 cut(s) 254, 259, 358, 495, 615
HpySE526I ACGT 2 cut(s) 150, 576
Hsp92II CATG 5 cut(s) 8, 122, 427, 435, 592
HspAI GCGC 2 cut(s) 122, 161
Kpn2I TCCGGA 1 cut(s) 196
Kzo9I GATC 1 cut(s) 106
LmnI GCTCC 1 cut(s) 542
Lsp1109I GCAGC 1 cut(s) 632
LweI GCATC 1 cut(s) 196
MaeII ACGT 2 cut(s) 150, 576
MaeIII GTNAC 3 cut(s) 151, 353, 509
MalI GATC 1 cut(s) 108
MboI GATC 1 cut(s) 106
MboII GAAGA 5 cut(s) 24, 73, 147, 309, 392
MhlI GDGCHC 1 cut(s) 237
MlyI GAGTC 1 cut(s) 32
MmeI TCCRAC 1 cut(s) 30
MnlI CCTC 5 cut(s) 49, 95, 131, 581, 624
Mph1103I ATGCAT 2 cut(s) 6, 673
MroI TCCGGA 1 cut(s) 196
MslI CAYNNNNRTG 1 cut(s) 656
MspI CCGG 4 cut(s) 29, 156, 197, 478
MspR9I CCNGG 1 cut(s) 479
Mva1269I GAATGC 1 cut(s) 77
MwoI GCNNNNNNNGC 5 cut(s) 25, 121, 284, 629, 668
NciI CCSGG 1 cut(s) 479
NdeII GATC 1 cut(s) 106
NlaIII CATG 5 cut(s) 8, 122, 427, 435, 592
NmeAIII GCCGAG 1 cut(s) 313
NmuCI GTSAC 2 cut(s) 151, 509
NsbI TGCGCA 1 cut(s) 123
NsiI ATGCAT 2 cut(s) 6, 673
NspI RCATGY 2 cut(s) 122, 592
PaeR7I CTCGAG 1 cut(s) 220
PciI ACATGT 1 cut(s) 588
PctI GAATGC 1 cut(s) 77
PfeI GAWTC 3 cut(s) 193, 413, 428
PinAI ACCGGT 1 cut(s) 155
PkrI GCNGC 3 cut(s) 286, 389, 622
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
PscI ACATGT 1 cut(s) 588
PspFI CCCAGC 1 cut(s) 662
PspPI GGNCC 1 cut(s) 568
PspXI VCTCGAGB 1 cut(s) 220
PstNI CAGNNNCTG 1 cut(s) 190
RsaI GTAC 4 cut(s) 226, 476, 593, 640
RsaNI GTAC 4 cut(s) 225, 475, 592, 639
RseI CAYNNNNRTG 1 cut(s) 656
SatI GCNGC 3 cut(s) 285, 388, 621
Sau3AI GATC 1 cut(s) 106
Sau96I GGNCC 1 cut(s) 568
ScaI AGTACT 1 cut(s) 226
SchI GAGTC 1 cut(s) 32
ScrFI CCNGG 1 cut(s) 479
SduI GDGCHC 1 cut(s) 237
SetI ASST 7 cut(s) 41, 153, 240, 260, 579, 625, 647
SfaNI GCATC 1 cut(s) 196
Sfr274I CTCGAG 1 cut(s) 220
SinI GGWCC 1 cut(s) 568
SlaI CTCGAG 1 cut(s) 220
SmiMI CAYNNNNRTG 1 cut(s) 656
SmlI CTYRAG 1 cut(s) 220
SmoI CTYRAG 1 cut(s) 220
SsiI CCGC 2 cut(s) 285, 387
StyD4I CCNGG 1 cut(s) 477
StyI CCWWGG 2 cut(s) 110, 600
TaaI ACNGT 2 cut(s) 48, 347
TaiI ACGT 2 cut(s) 153, 579
TaqI TCGA 2 cut(s) 146, 221
TatI WGTACW 2 cut(s) 224, 591
TauI GCSGC 2 cut(s) 287, 390
TfiI GAWTC 3 cut(s) 193, 413, 428
TscAI CASTG 1 cut(s) 181
TseFI GTSAC 2 cut(s) 151, 509
TseI GCWGC 1 cut(s) 620
Tsp45I GTSAC 2 cut(s) 151, 509
TspDTI ATGAA 1 cut(s) 351
TspRI CASTG 1 cut(s) 181
VneI GTGCAC 1 cut(s) 233
VpaK11BI GGWCC 1 cut(s) 568
XceI RCATGY 2 cut(s) 122, 592
XhoI CTCGAG 1 cut(s) 220
ZrmI AGTACT 1 cut(s) 226
Zsp2I ATGCAT 2 cut(s) 6, 673
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.