Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003392.1

Orthogroup ID

OG0016717

Physical Location & Seq

Genomic Coordinates Reverse (-)

21315 .. 26069

Gene Structure 4755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3486 bp

atgtcctcctccttctctgcccacctcctctccaaacctttacacacattctcttccctccaaatccaacaacccacatctcccaaaaggaccaccccaccccccaactcctctcttctcaaacccatctccgattcccgctcatggatcgacaccattcgctcccgaacccggtccagtcactacaaagaagccatctcaacctacatcgaaatgacccgtaccggtatcgaacccgacaactttgccttcccggcggtcctcaaggccgtcacggcccttcaagacttgaacttggggaagcagatacacgcccatgttgtcaaatttggatatgagtcatcttctgtcaccgtggcgaatactcttgtcaatgtgtatgggaaatgtggcgatattggagatgcgtacaaggtgttcgatggaatgactgagagggatcaggtttcttggaattccatgattgctgctttgtgtaggtttgaggaatgggagctggctttggaggcgtttaggtcgatgttttcggataatgtggagcctagctcgtttactttggtgagtgctgcacttgcttgttccaatttggataggcgtgatggcttgaggcttgggaagcaagttcatgcgtatagtataagaatgtgtgagtcgaaaacgtttactgtcaatgctttgatgtctatgtatgctaagttggggatggtgggatactcgagaggtgtgtttgagttgtttgaggagtgtgacttggtttcgtggaacaccatgataagttcactgtctcagaatgaccggtttgtggaggcattagagttcttccggttgatggttcttgagggaattagaccagatggggtgacggttgcgagtgttcttcctgcatgttctcatttggagatgttggaggcagggaaggaaattcatgcttatgcattgagagccaatgagctaactgggaattcttatgtgggcagtgctttagttgacatgtattgtaactgccggcaagttgaaagtggtcgtagagtttttaatgctgtcacggagcggagagttccactttggaatgcaatgattactggttatgcacaaaatgagtatgatgaggaggccttggacctgttccttgaaatgtatgctgtgtcggggcatagtccaaatgccaccacaatgtcgagtattgtgccagcatgtgtgcggtctaaagcattcttgggaaaagaaagtatccatggttttgtaataaagcggagtctggagaagaacaggtacgtgcaaaatgcgcttatggacatgtactcgaggatggggagaacagaaattgcagaaactatatttaacagcatggaaggaaaagacattgtatcatggaacaccatgatcaccggttatgtcatttccggacgtcatgatgacgcacttaatctgctatatgaattgcaaagagtagaagaaaacaagaacaccaatggtactgggtatgataatgaaagaagggttccccttaagccaaatactataacactcatgactcttcttcctagttgtgctgtattatcagcactcgctaaagggaaagagatccatgcttatgctactagacatttgttggcactagatattgctgtaggtagtgcactggttgacatgtatgctaaatgtggctgcttagatttatctagagccatgtttaatcagatgccgttaaagaatgtgatcacctggaatgtgcttatcatggcttatggtatgcatggaagaggagaggaagccttagaactctttaggaatatggtggatgaaggaagatggaataaagagataaggcctaatgaagttacattcattgcaatttttgcagcttgtagtcattctgggatggtaaatgaaggtctgaacttgttccacacaatgaaacaagaccacggcattgaacctgcaccagaccattatgcttgtgttgtggatttgcttggtcgggctggtagtgtggagcgagcatatgaaatcatcaaaaccatgccttctgagtttgataaagcaggtgcctggagtagcttgcttggtgcttgtcgactccaccaaaatgtagagattggagaaattgcagctaatcatctcctgcagctggagcctgatgtggctagtcactatgttctactctctaatatctactcatcttctggactttgggaaaaggccatggatctccggagaaaaatgaaggaaatgggagtgagaaaagagcctggttgtagttggatcgagtttgaagatgaggttcataagtttttggctggggatctgtcgcacccacaaagtgagcagctccatgaatatctcgaaaccctgtcagaaaggatgaaaaaggagggttatgtgcctgatacttcttgtgtacttcacaatgttgatgaggacgagaaggaaactttactctgtgggcacagtgaaaaactggcaatggctttcggcctcctcaatacccgtccagggactaccattagagttgccaagaaccttagagtctgtaatgactgccaccttgcagcgaaatatatctcaaagatgctggacagggagatcattttaagagatcaaagcaacaatggcggatgtgaagatggcgatgctgagacgtttgctttccggaccgagatcaaccagcttctgagcttgatcatcaatacgttctacagcaacaaggagatttttcttcgcgagcttatcagcaattcatctgatgctctggacaagattagattcgagagtcttacggataagagcaagcttgatgctcagccggagcttttcatcaggattgttccggataagaccaacaatactctctccatcattgatagcgggatcggcatgattaaagcagatttggtgaacaatatgggcacaattgcaaggtctggaaccaaggagtttacggaagcattggcttctggagtttctgatgtgagcatgattggacagtttggtgttggtttctattcggcatatcttgttgcagagaaggtcattgtgactacaaagcacaatgatgatgagcaatacatctgggagtctcaggctggtggttcattcacagtgacaagggatgtcaatggcgagcagcttggcaggggcaccaagatcactctcttcctcaaggaggaccagttggaatacttggaagagaggaggatcaaagaccttgtgaagaagcattccaaatttatcagctatcccatctacttgtggactgagaagacaactgaaaaggagatctgtgatgatgaagaggacgaacccaagaaggaagagaaaggagatattgaggaagttgatgaggacaaggagaaagaagggaagaagaagaagaagaagatcaaggaagtttctcatgagtgggaactcatcaacaagcagaaaccaatctggctgcgcaagcctaaggaaatcaccaaggatgaatatgcctcattctactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

1161

Amino Acids

130.88

Weight (kDa)

5.59

Isoelectric Point (pI)

47.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	147 - 185	1.6e-07	PPR repeat family
PPR_2	PF13041	250 - 297	4.2e-08	PPR repeat family
PPR	PF01535	252 - 282	5.9e-07	PPR repeat
PPR_2	PF13041	355 - 400	4.7e-06	PPR repeat family
PPR_2	PF13041	571 - 603	1.4e-06	PPR repeat family
PPR	PF01535	574 - 603	4.5e-08	PPR repeat
E_motif	PF20431	695 - 757	5e-21	E motif
Eplus_motif	PF20430	762 - 789	1.1e-06	E+ motif
DYW_deaminase	PF14432	793 - 877	4.2e-32	DYW family of nucleic acid deaminases
HATPase_c	PF02518	904 - 1057	4.2e-06	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c_3	PF13589	905 - 1022	8.7e-08	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HSP90	PF00183	1060 - 1161	8.4e-31	Hsp90 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57430
fragaria_vesca	FvH4_3g13090
malus_domestica	MD10G1226400.v1.1
prunus_persica	Prupe.1G101200_v2.0.a1
pyrus_communis	pycom10g19030
rosa_chinensis	RchiOBHm_Chr5g0021321
rosa_laevigata	RLG00000032604
rosa_multiflora	Rmu_co8520529.1_g000003 Rmu_sc0003392.1_g000007 Rmu_sc0004847.1_g000016
rosa_rugosa	Rorug05G0066300
rosa_samantha	Rh5BG154900 Rh5CG168400
rosa_wichuraiana	Rw5G013850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2036
AatII	GACGTC	1 cut(s)	1411
Acc16I	TGCGCA	1 cut(s)	3440
Acc36I	ACCTGC	2 cut(s)	1948, 2036
AccB1I	GGYRCC	2 cut(s)	2048, 3140
AccBSI	CCGCTC	2 cut(s)	141, 1051
AccI	GTMKAC	1 cut(s)	2077
AccII	CGCG	1 cut(s)	2724
AccIII	TCCGGA	4 cut(s)	1403, 2214, 2652, 2830
AciI	CCGC	7 cut(s)	139, 257, 1051, 1201, 1252, 2616, 2868
AclI	AACGTT	1 cut(s)	659
AclWI	GGATC	8 cut(s)	155, 447, 1579, 2217, 2273, 2313, 2879, 3206
AcsI	RAATTY	5 cut(s)	326, 454, 921, 961, 3227
AcyI	GRCGYC	1 cut(s)	1408
AdeI	CACNNNGTG	1 cut(s)	2324
AfaI	GTAC	6 cut(s)	223, 410, 1274, 1301, 1477, 2403
AfiI	CCNNNNNNNGG	7 cut(s)	144, 171, 802, 829, 2131, 2496, 3166
AflII	CTTAAG	1 cut(s)	1508
AflIII	ACRYGT	3 cut(s)	990, 1296, 1650
AgeI	ACCGGT	3 cut(s)	224, 795, 1388
AgsI	TTSAA	6 cut(s)	284, 292, 1016, 1133, 1937, 2276
AjnI	CCWGG	4 cut(s)	1724, 2051, 2251, 2494
Alw21I	GWGCWC	1 cut(s)	1642
Alw26I	GTCTC	3 cut(s)	789, 2633, 3084
Alw44I	GTGCAC	1 cut(s)	1638
AlwI	GGATC	8 cut(s)	155, 447, 1579, 2217, 2273, 2313, 2879, 3206
AlwNI	CAGNNNCTG	1 cut(s)	2674
Ama87I	CYCGRG	2 cut(s)	715, 1303
Aor13HI	TCCGGA	4 cut(s)	1403, 2214, 2652, 2830
AoxI	GGCC	6 cut(s)	267, 276, 1113, 1829, 2202, 2476
ApaLI	GTGCAC	1 cut(s)	1638
ApoI	RAATTY	5 cut(s)	326, 454, 921, 961, 3227
AsiGI	ACCGGT	3 cut(s)	224, 795, 1388
Asp700I	GAANNNNTTC	1 cut(s)	1904
AspLEI	GCGC	2 cut(s)	1288, 3441
AspS9I	GGNCC	7 cut(s)	90, 174, 259, 277, 1120, 2655, 3169
AsuC2I	CCSGG	2 cut(s)	172, 254
AsuHPI	GGTGA	7 cut(s)	343, 571, 871, 1378, 1714, 2908, 3448
AvaI	CYCGRG	2 cut(s)	715, 1303
AvaII	GGWCC	6 cut(s)	90, 174, 259, 1120, 2655, 3169
AxyI	CCTNAGG	1 cut(s)	3447
BaeGI	GKGCMC	4 cut(s)	1642, 2451, 2912, 3143
BanI	GGYRCC	2 cut(s)	2048, 3140
BarI	GAAGNNNNNNTAC	2 cut(s)	1256, 1288
BbsI	GAAGAC	1 cut(s)	3269
Bbv12I	GWGCWC	1 cut(s)	1642
BceAI	ACGGC	4 cut(s)	254, 291, 1690, 1945
BcgI	CGANNNNNNTGC	4 cut(s)	227, 261, 1168, 1202
BciT130I	CCWGG	4 cut(s)	1726, 2053, 2253, 2496
BciVI	GTATCC	2 cut(s)	704, 1241
BclI	TGATCA	3 cut(s)	1383, 1719, 2682
BcnI	CCSGG	2 cut(s)	172, 254
BcoDI	GTCTC	3 cut(s)	789, 2633, 3084
BfaI	CTAG	7 cut(s)	543, 1545, 1602, 1619, 1683, 2148, 3484
BfmI	CTRYAG	3 cut(s)	1629, 2126, 2698
BfrI	CTTAAG	1 cut(s)	1508
BfuAI	ACCTGC	2 cut(s)	1948, 2036
BfuI	GTATCC	2 cut(s)	704, 1241
BglI	GCCNNNNNGGC	2 cut(s)	254, 275
BglII	AGATCT	1 cut(s)	3279
BlpI	GCTNAGC	1 cut(s)	2802
Bme1390I	CCNGG	6 cut(s)	172, 254, 1726, 2053, 2253, 2496
Bme18I	GGWCC	6 cut(s)	90, 174, 259, 1120, 2655, 3169
BmeT110I	CYCGRG	2 cut(s)	715, 1303
BmgT120I	GGNCC	7 cut(s)	90, 174, 259, 277, 1120, 2655, 3169
BmiI	GGNNCC	6 cut(s)	540, 1503, 2050, 2136, 2929, 3142
BmrFI	CCNGG	6 cut(s)	172, 254, 1726, 2053, 2253, 2496
BmrI	ACTGGG	2 cut(s)	966, 1488
BmsI	GCATC	6 cut(s)	394, 1692, 2562, 2623, 2737, 2788
BmuI	ACTGGG	2 cut(s)	966, 1488
BpiI	GAAGAC	1 cut(s)	3269
BplI	GAGNNNNNCTC	2 cut(s)	530, 562
BpmI	CTGGAG	4 cut(s)	1280, 2074, 2153, 2979
Bpu1102I	GCTNAGC	1 cut(s)	2802
BpuEI	CTTGAG	4 cut(s)	248, 625, 857, 3146
BpuMI	CCSGG	2 cut(s)	172, 254
BsaAI	YACGTR	1 cut(s)	1276
BsaHI	GRCGYC	1 cut(s)	1408
BsaJI	CCNNGG	8 cut(s)	354, 1116, 1234, 1927, 2205, 2495, 2931, 3459
BsaWI	WCCGGW	8 cut(s)	224, 795, 822, 1388, 1403, 2214, 2652, 2830
BsaXI	ACNNNNNCTCC	4 cut(s)	14, 44, 3158, 3188
Bsc4I	CCNNNNNNNGG	7 cut(s)	144, 171, 802, 829, 2131, 2496, 3166
Bse118I	RCCGGY	4 cut(s)	224, 795, 1005, 1388
Bse1I	ACTGG	7 cut(s)	177, 961, 1087, 1483, 1647, 2466, 3172
Bse21I	CCTNAGG	1 cut(s)	3447
Bse3DI	GCAATG	3 cut(s)	1080, 1848, 2472
BseAI	TCCGGA	4 cut(s)	1403, 2214, 2652, 2830
BseBI	CCWGG	4 cut(s)	1726, 2053, 2253, 2496
BseDI	CCNNGG	8 cut(s)	354, 1116, 1234, 1927, 2205, 2495, 2931, 3459
BseGI	GGATG	8 cut(s)	708, 1314, 1807, 1887, 2370, 2624, 3118, 3469
BseLI	CCNNNNNNNGG	7 cut(s)	144, 171, 802, 829, 2131, 2496, 3166
BseMI	GCAATG	3 cut(s)	1080, 1848, 2472
BseMII	CTCAG	8 cut(s)	423, 800, 2022, 2628, 2666, 2816, 3095, 3249
BseNI	ACTGG	7 cut(s)	177, 961, 1087, 1483, 1647, 2466, 3172
BseRI	GAGGAG	7 cut(s)	17, 100, 755, 1124, 1779, 2471, 3208
BseSI	GKGCMC	4 cut(s)	1642, 2451, 2912, 3143
BseYI	CCCAGC	1 cut(s)	2300
BsgI	GTGCAG	2 cut(s)	552, 1926
Bsh1236I	CGCG	1 cut(s)	2724
BshFI	GGCC	6 cut(s)	269, 278, 1115, 1831, 2204, 2478
BshNI	GGYRCC	2 cut(s)	2048, 3140
BshTI	ACCGGT	3 cut(s)	224, 795, 1388
BsiHKAI	GWGCWC	1 cut(s)	1642
BsiHKCI	CYCGRG	2 cut(s)	715, 1303
BslFI	GGGAC	1 cut(s)	2512
BslI	CCNNNNNNNGG	7 cut(s)	144, 171, 802, 829, 2131, 2496, 3166
BsmAI	GTCTC	3 cut(s)	789, 2633, 3084
BsmBI	CGTCTC	1 cut(s)	2633
BsmFI	GGGAC	1 cut(s)	2512
BsmI	GAATGC	3 cut(s)	1075, 1211, 3220
BsnI	GGCC	6 cut(s)	269, 278, 1115, 1831, 2204, 2478
BsoBI	CYCGRG	2 cut(s)	715, 1303
Bsp1286I	GDGCHC	4 cut(s)	1642, 2451, 2912, 3143
Bsp13I	TCCGGA	4 cut(s)	1403, 2214, 2652, 2830
Bsp1720I	GCTNAGC	1 cut(s)	2802
Bsp19I	CCATGG	2 cut(s)	1234, 2205
Bsp68I	TCGCGA	1 cut(s)	2724
BspACI	CCGC	7 cut(s)	139, 257, 1051, 1201, 1252, 2616, 2868
BspANI	GGCC	6 cut(s)	269, 278, 1115, 1831, 2204, 2478
BspCNI	CTCAG	8 cut(s)	424, 799, 2023, 2629, 2667, 2815, 3094, 3250
BspEI	TCCGGA	4 cut(s)	1403, 2214, 2652, 2830
BspFNI	CGCG	1 cut(s)	2724
BspHI	TCATGA	3 cut(s)	1411, 1530, 3397
BspLI	GGNNCC	6 cut(s)	540, 1503, 2050, 2136, 2929, 3142
BspMAI	CTGCAG	1 cut(s)	2130
BspMI	ACCTGC	2 cut(s)	1948, 2036
BspPI	GGATC	8 cut(s)	155, 447, 1579, 2217, 2273, 2313, 2879, 3206
BspT107I	GGYRCC	2 cut(s)	2048, 3140
BspTI	CTTAAG	1 cut(s)	1508
BsrBI	CCGCTC	2 cut(s)	141, 1051
BsrDI	GCAATG	3 cut(s)	1080, 1848, 2472
BsrFI	RCCGGY	4 cut(s)	224, 795, 1005, 1388
BsrI	ACTGG	7 cut(s)	177, 961, 1087, 1483, 1647, 2466, 3172
BssAI	RCCGGY	4 cut(s)	224, 795, 1005, 1388
BssECI	CCNNGG	8 cut(s)	354, 1116, 1234, 1927, 2205, 2495, 2931, 3459
BssNI	GRCGYC	1 cut(s)	1408
BssT1I	CCWWGG	5 cut(s)	1116, 1234, 2205, 2931, 3459
Bst2UI	CCWGG	4 cut(s)	1726, 2053, 2253, 2496
Bst4CI	ACNGT	7 cut(s)	355, 667, 783, 865, 2453, 2988, 3103
Bst6I	CTCTTC	8 cut(s)	58, 120, 1542, 1756, 3161, 3183, 3288, 3309
BstACI	GRCGYC	1 cut(s)	1408
BstAFI	CTTAAG	1 cut(s)	1508
BstAPI	GCANNNNNTGC	1 cut(s)	1859
BstBAI	YACGTR	1 cut(s)	1276
BstC8I	GCNNGC	9 cut(s)	498, 1007, 1191, 2001, 2063, 2726, 2792, 3125, 3443
BstDSI	CCRYGG	4 cut(s)	354, 1234, 1927, 2205
BstENI	CCTNNNNNAGG	1 cut(s)	3164
BstF5I	GGATG	8 cut(s)	708, 1314, 1807, 1887, 2370, 2624, 3118, 3469
BstFNI	CGCG	1 cut(s)	2724
BstHHI	GCGC	2 cut(s)	1288, 3441
BstMAI	GTCTC	3 cut(s)	789, 2633, 3084
BstNI	CCWGG	4 cut(s)	1726, 2053, 2253, 2496
BstNSI	RCATGY	5 cut(s)	888, 994, 1197, 1300, 1654
BstSCI	CCNGG	6 cut(s)	170, 252, 1724, 2051, 2251, 2494
BstSFI	CTRYAG	3 cut(s)	1629, 2126, 2698
BstSLI	GKGCMC	4 cut(s)	1642, 2451, 2912, 3143
BstUI	CGCG	1 cut(s)	2724
BstV2I	GAAGAC	1 cut(s)	3269
BstX2I	RGATCY	4 cut(s)	1584, 2209, 2305, 3279
BstYI	RGATCY	4 cut(s)	1584, 2209, 2305, 3279
Bsu36I	CCTNAGG	1 cut(s)	3447
BsuI	GTATCC	2 cut(s)	704, 1241
BsuRI	GGCC	6 cut(s)	269, 278, 1115, 1831, 2204, 2478
BtgI	CCRYGG	4 cut(s)	354, 1234, 1927, 2205
BtgZI	GCGATG	1 cut(s)	2646
BtsCI	GGATG	8 cut(s)	708, 1314, 1807, 1887, 2370, 2624, 3118, 3469
BtsI	GCAGTG	1 cut(s)	982
BtsIMutI	CAGTG	5 cut(s)	779, 982, 1640, 2458, 3108
BtuMI	TCGCGA	1 cut(s)	2724
BveI	ACCTGC	2 cut(s)	1948, 2036
Cac8I	GCNNGC	9 cut(s)	498, 1007, 1191, 2001, 2063, 2726, 2792, 3125, 3443
CaiI	CAGNNNCTG	1 cut(s)	2674
CciI	TCATGA	3 cut(s)	1411, 1530, 3397
CfoI	GCGC	2 cut(s)	1288, 3441
Cfr10I	RCCGGY	4 cut(s)	224, 795, 1005, 1388
Cfr13I	GGNCC	7 cut(s)	90, 174, 259, 277, 1120, 2655, 3169
CpoI	CGGWCCG	1 cut(s)	2655
CseI	GACGC	1 cut(s)	1427
Csp6I	GTAC	6 cut(s)	222, 409, 1273, 1300, 1476, 2402
CspAI	ACCGGT	3 cut(s)	224, 795, 1388
CspI	CGGWCCG	1 cut(s)	2655
CviQI	GTAC	6 cut(s)	222, 409, 1273, 1300, 1476, 2402
DraIII	CACNNNGTG	1 cut(s)	2324
Eam1104I	CTCTTC	8 cut(s)	58, 120, 1542, 1756, 3161, 3183, 3288, 3309
EarI	CTCTTC	8 cut(s)	58, 120, 1542, 1756, 3161, 3183, 3288, 3309
EciI	GGCGGA	1 cut(s)	2631
Eco130I	CCWWGG	5 cut(s)	1116, 1234, 2205, 2931, 3459
Eco147I	AGGCCT	2 cut(s)	1115, 1831
Eco47I	GGWCC	6 cut(s)	90, 174, 259, 1120, 2655, 3169
Eco81I	CCTNAGG	1 cut(s)	3447
Eco88I	CYCGRG	2 cut(s)	715, 1303
EcoNI	CCTNNNNNAGG	1 cut(s)	3164
EcoRI	GAATTC	2 cut(s)	454, 961
EcoRII	CCWGG	4 cut(s)	1724, 2051, 2251, 2494
EcoT14I	CCWWGG	5 cut(s)	1116, 1234, 2205, 2931, 3459
EcoT22I	ATGCAT	2 cut(s)	937, 1758
ErhI	CCWWGG	5 cut(s)	1116, 1234, 2205, 2931, 3459
Esp3I	CGTCTC	1 cut(s)	2633
FaqI	GGGAC	1 cut(s)	2512
FauI	CCCGC	2 cut(s)	146, 2861
FauNDI	CATATG	1 cut(s)	2005
FbaI	TGATCA	3 cut(s)	1383, 1719, 2682
FblI	GTMKAC	1 cut(s)	2077
FokI	GGATG	8 cut(s)	715, 1321, 1814, 1894, 2377, 2631, 3125, 3476
FspBI	CTAG	7 cut(s)	543, 1545, 1602, 1619, 1683, 2148, 3484
FspI	TGCGCA	1 cut(s)	3440
GlaI	GCGC	2 cut(s)	1287, 3440
GsaI	CCCAGC	1 cut(s)	2304
GsuI	CTGGAG	4 cut(s)	1280, 2074, 2153, 2979
HaeIII	GGCC	6 cut(s)	269, 278, 1115, 1831, 2204, 2478
HgaI	GACGC	1 cut(s)	1427
HhaI	GCGC	2 cut(s)	1288, 3441
Hin1I	GRCGYC	1 cut(s)	1408
Hin6I	GCGC	2 cut(s)	1286, 3439
HinP1I	GCGC	2 cut(s)	1286, 3439
HincII	GTYRAC	3 cut(s)	988, 1648, 2078
HindII	GTYRAC	3 cut(s)	988, 1648, 2078
HindIII	AAGCTT	1 cut(s)	2792
HphI	GGTGA	7 cut(s)	343, 571, 871, 1378, 1714, 2908, 3448
HpyCH4III	ACNGT	7 cut(s)	355, 667, 783, 865, 2453, 2988, 3103
HpyCH4IV	ACGT	5 cut(s)	659, 1275, 1408, 2642, 2693
HpySE526I	ACGT	5 cut(s)	659, 1275, 1408, 2642, 2693
Hsp92I	GRCGYC	1 cut(s)	1408
HspAI	GCGC	2 cut(s)	1286, 3439
Kpn2I	TCCGGA	4 cut(s)	1403, 2214, 2652, 2830
KroI	GCCGGC	1 cut(s)	1005
KroNI	GCCGGC	1 cut(s)	1007
Ksp22I	TGATCA	3 cut(s)	1383, 1719, 2682
LmnI	GCTCC	8 cut(s)	167, 493, 538, 1048, 1996, 2134, 2337, 2809
LweI	GCATC	6 cut(s)	394, 1692, 2562, 2623, 2737, 2788
MaeI	CTAG	7 cut(s)	543, 1545, 1602, 1619, 1683, 2148, 3484
MaeII	ACGT	5 cut(s)	659, 1275, 1408, 2642, 2693
MbiI	CCGCTC	2 cut(s)	141, 1051
MfeI	CAATTG	1 cut(s)	2913
MflI	RGATCY	4 cut(s)	1584, 2209, 2305, 3279
MhlI	GDGCHC	4 cut(s)	1642, 2451, 2912, 3143
MlyI	GAGTC	8 cut(s)	347, 659, 1264, 1528, 2073, 2538, 2782, 3086
MmeI	TCCRAC	4 cut(s)	91, 885, 2243, 3156
Mph1103I	ATGCAT	2 cut(s)	937, 1758
MroI	TCCGGA	4 cut(s)	1403, 2214, 2652, 2830
MroNI	GCCGGC	1 cut(s)	1005
MroXI	GAANNNNTTC	1 cut(s)	1904
MseI	TTAA	8 cut(s)	1035, 1341, 1425, 1509, 1695, 1709, 2594, 2883
MslI	CAYNNNNRTG	7 cut(s)	212, 315, 930, 1172, 1593, 2088, 3054
MspA1I	CMGCKG	1 cut(s)	2131
MspCI	CTTAAG	1 cut(s)	1508
MspR9I	CCNGG	6 cut(s)	172, 254, 1726, 2053, 2253, 2496
MunI	CAATTG	1 cut(s)	2913
Mva1269I	GAATGC	3 cut(s)	1075, 1211, 3220
MvaI	CCWGG	4 cut(s)	1726, 2053, 2253, 2496
MvnI	CGCG	1 cut(s)	2724
NaeI	GCCGGC	1 cut(s)	1007
NciI	CCSGG	2 cut(s)	172, 254
NcoI	CCATGG	2 cut(s)	1234, 2205
NdeI	CATATG	1 cut(s)	2005
NgoMIV	GCCGGC	1 cut(s)	1005
NlaIV	GGNNCC	6 cut(s)	540, 1503, 2050, 2136, 2929, 3142
NmuCI	GTSAC	9 cut(s)	179, 271, 349, 746, 859, 1042, 2150, 3037, 3103
NruI	TCGCGA	1 cut(s)	2724
NsbI	TGCGCA	1 cut(s)	3440
NsiI	ATGCAT	2 cut(s)	937, 1758
NspI	RCATGY	5 cut(s)	888, 994, 1197, 1300, 1654
PaeR7I	CTCGAG	2 cut(s)	715, 1303
PagI	TCATGA	3 cut(s)	1411, 1530, 3397
PaqCI	CACCTGC	1 cut(s)	2036
PceI	AGGCCT	2 cut(s)	1115, 1831
PciI	ACATGT	3 cut(s)	990, 1296, 1650
PctI	GAATGC	3 cut(s)	1075, 1211, 3220
PdiI	GCCGGC	1 cut(s)	1007
PdmI	GAANNNNTTC	1 cut(s)	1904
PfeI	GAWTC	2 cut(s)	134, 2766
PinAI	ACCGGT	3 cut(s)	224, 795, 1388
PleI	GAGTC	8 cut(s)	346, 658, 1263, 1528, 2073, 2537, 2781, 3085
PpsI	GAGTC	8 cut(s)	346, 658, 1263, 1528, 2073, 2537, 2781, 3085
Ppu21I	YACGTR	1 cut(s)	1276
PscI	ACATGT	3 cut(s)	990, 1296, 1650
Psp1406I	AACGTT	1 cut(s)	659
Psp6I	CCWGG	4 cut(s)	1724, 2051, 2251, 2494
PspFI	CCCAGC	1 cut(s)	2300
PspGI	CCWGG	4 cut(s)	1724, 2051, 2251, 2494
PspN4I	GGNNCC	6 cut(s)	540, 1503, 2050, 2136, 2929, 3142
PspPI	GGNCC	7 cut(s)	90, 174, 259, 277, 1120, 2655, 3169
PspXI	VCTCGAGB	1 cut(s)	1303
PsrI	GAACNNNNNNTAC	2 cut(s)	401, 433
PstI	CTGCAG	1 cut(s)	2130
PstNI	CAGNNNCTG	1 cut(s)	2674
PsuI	RGATCY	4 cut(s)	1584, 2209, 2305, 3279
PvuII	CAGCTG	1 cut(s)	2131
RruI	TCGCGA	1 cut(s)	2724
RsaI	GTAC	6 cut(s)	223, 410, 1274, 1301, 1477, 2403
RsaNI	GTAC	6 cut(s)	222, 409, 1273, 1300, 1476, 2402
RseI	CAYNNNNRTG	7 cut(s)	212, 315, 930, 1172, 1593, 2088, 3054
Rsr2I	CGGWCCG	1 cut(s)	2655
RsrII	CGGWCCG	1 cut(s)	2655
SalI	GTCGAC	1 cut(s)	2076
SaqAI	TTAA	8 cut(s)	1035, 1341, 1425, 1509, 1695, 1709, 2594, 2883
Sau96I	GGNCC	7 cut(s)	90, 174, 259, 277, 1120, 2655, 3169
SchI	GAGTC	8 cut(s)	347, 659, 1264, 1528, 2073, 2538, 2782, 3086
ScrFI	CCNGG	6 cut(s)	172, 254, 1726, 2053, 2253, 2496
SduI	GDGCHC	4 cut(s)	1642, 2451, 2912, 3143
SfaNI	GCATC	6 cut(s)	394, 1692, 2562, 2623, 2737, 2788
SfcI	CTRYAG	3 cut(s)	1629, 2126, 2698
SfiI	GGCCNNNNNGGCC	1 cut(s)	275
Sfr274I	CTCGAG	2 cut(s)	715, 1303
SinI	GGWCC	6 cut(s)	90, 174, 259, 1120, 2655, 3169
SlaI	CTCGAG	2 cut(s)	715, 1303
SmiMI	CAYNNNNRTG	7 cut(s)	212, 315, 930, 1172, 1593, 2088, 3054
SmlI	CTYRAG	7 cut(s)	263, 604, 715, 836, 1303, 1508, 3161
SmoI	CTYRAG	7 cut(s)	263, 604, 715, 836, 1303, 1508, 3161
SseBI	AGGCCT	2 cut(s)	1115, 1831
SsiI	CCGC	7 cut(s)	139, 257, 1051, 1201, 1252, 2616, 2868
SspMI	CTAG	7 cut(s)	543, 1545, 1602, 1619, 1683, 2148, 3484
StuI	AGGCCT	2 cut(s)	1115, 1831
StyD4I	CCNGG	6 cut(s)	170, 252, 1724, 2051, 2251, 2494
StyI	CCWWGG	5 cut(s)	1116, 1234, 2205, 2931, 3459
TaaI	ACNGT	7 cut(s)	355, 667, 783, 865, 2453, 2988, 3103
TaiI	ACGT	5 cut(s)	662, 1278, 1411, 2645, 2696
TaqII	GACCGA	1 cut(s)	2672
TatI	WGTACW	2 cut(s)	1299, 2401
TfiI	GAWTC	2 cut(s)	134, 2766
Tru1I	TTAA	8 cut(s)	1035, 1341, 1425, 1509, 1695, 1709, 2594, 2883
Tru9I	TTAA	8 cut(s)	1035, 1341, 1425, 1509, 1695, 1709, 2594, 2883
TscAI	CASTG	5 cut(s)	786, 982, 1647, 2458, 3108
TseFI	GTSAC	9 cut(s)	179, 271, 349, 746, 859, 1042, 2150, 3037, 3103
Tsp45I	GTSAC	9 cut(s)	179, 271, 349, 746, 859, 1042, 2150, 3037, 3103
TspGWI	ACGGA	3 cut(s)	1061, 2795, 2957
TspRI	CASTG	5 cut(s)	786, 982, 1647, 2458, 3108
Vha464I	CTTAAG	1 cut(s)	1508
VneI	GTGCAC	1 cut(s)	1638
VpaK11BI	GGWCC	6 cut(s)	90, 174, 259, 1120, 2655, 3169
XagI	CCTNNNNNAGG	1 cut(s)	3164
XapI	RAATTY	5 cut(s)	326, 454, 921, 961, 3227
XbaI	TCTAGA	1 cut(s)	1682
XceI	RCATGY	5 cut(s)	888, 994, 1197, 1300, 1654
XhoI	CTCGAG	2 cut(s)	715, 1303
XmiI	GTMKAC	1 cut(s)	2077
XmnI	GAANNNNTTC	1 cut(s)	1904
XspI	CTAG	7 cut(s)	543, 1545, 1602, 1619, 1683, 2148, 3484
ZraI	GACGTC	1 cut(s)	1409
Zsp2I	ATGCAT	2 cut(s)	937, 1758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.