Rmu_sc0003505.1_g000024

protein disulfide oxidoreductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003505.1
OG0016640
Physical Location & Seq
Reverse (-)
112645 .. 113454
810 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 810 bp
atgggctgctcttcttcaacccttcgcaccaaaaaccacccagaacaaccacaccaccgcccacaatcacaatgctcttgttcttcttcttcttcttcttcttcagcttccataaactcctcaccattcccactccgaagagccctctctcttgttcatcacccacctctcaaaaagggcgacaccaaccaccttgtctctctcacctccaccacttatggttctctccgtatcatcgaccaccctcttccttcatccccattatcatacaccaatctccacagtcaggaccaacccccagccaagtcctcatctttttctcccgactccgtcatcaacacctgggaacttatggacggtcttaacgatgaatcccattctccttcttttgcacaaaaaccacaatcttcagtgaaattcataggagcgcaaaagaagccgctatggcagcatttatcagaggaatcattgctggcaaagatggaccccaatgtggtttccacttataggagagctctatcttctagcaaattgcgcacaacactgccttttaagagccgccctttgaattgttctacttcttcaccagcaccggtaaattccaattccaatgcttgttttcttctcccgggaagtgaagacaaaatcgtcgtctactccaccagtttgagaggaatccgaaagacttacgaggattgctgcgctgttcggatgatcttcaggggtttgcgcgtggctgtggatgagagggacatttcaatggactcccagtacaagaaagagttgcagaatgcagttagaggtttctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

269

Amino Acids

29.65

Weight (kDa)

9.38

Isoelectric Point (pI)

63.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 216 - 264 2.7e-07 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016640)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41330 AT3G57070
malus_domestica MD14G1084700.v1.1
prunus_persica Prupe.7G043200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0125081
rosa_laevigata RLG00000018848
rosa_multiflora Rmu_sc0003505.1_g000023 Rmu_sc0003505.1_g000024
rosa_roxburghii Rroxscaffold_2G00118710
rosa_rugosa Rorug02G0255600
rosa_samantha Rh2AG314000 Rh2BG322300 Rh2DG340700
rosa_wichuraiana Rw2G025410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 647
Acc16I TGCGCA 1 cut(s) 536
AccI GTMKAC 1 cut(s) 654
AccII CGCG 1 cut(s) 732
AciI CCGC 3 cut(s) 58, 440, 559
AcsI RAATTY 2 cut(s) 416, 598
AcuI CTGAAG 3 cut(s) 87, 393, 703
AfaI GTAC 1 cut(s) 773
AfiI CCNNNNNNNGG 3 cut(s) 286, 493, 507
AgeI ACCGGT 1 cut(s) 592
AgsI TTSAA 3 cut(s) 18, 568, 759
AjnI CCWGG 1 cut(s) 341
AluBI AGCT 2 cut(s) 107, 515
AluI AGCT 2 cut(s) 107, 515
Alw21I GWGCWC 1 cut(s) 517
Alw26I GTCTC 1 cut(s) 202
Ama87I CYCGRG 1 cut(s) 628
ApeKI GCWGC 3 cut(s) 6, 448, 699
ApoI RAATTY 2 cut(s) 416, 598
ArsI GACNNNNNNTTYG 2 cut(s) 636, 668
AsiGI ACCGGT 1 cut(s) 592
AspLEI GCGC 4 cut(s) 430, 537, 704, 732
AspS9I GGNCC 2 cut(s) 289, 484
AsuC2I CCSGG 2 cut(s) 629, 630
AsuHPI GGTGA 4 cut(s) 114, 152, 196, 576
AvaI CYCGRG 1 cut(s) 628
AvaII GGWCC 2 cut(s) 289, 484
BanII GRGCYC 2 cut(s) 145, 517
BbsI GAAGAC 1 cut(s) 645
Bbv12I GWGCWC 1 cut(s) 517
BbvI GCAGC 2 cut(s) 460, 686
BccI CCATC 1 cut(s) 475
BciT130I CCWGG 1 cut(s) 343
BcnI CCSGG 2 cut(s) 629, 630
BcoDI GTCTC 1 cut(s) 202
BfaI CTAG 1 cut(s) 525
BglI GCCNNNNNGGC 1 cut(s) 445
BisI GCNGC 5 cut(s) 7, 440, 449, 559, 700
BlsI GCNGC 5 cut(s) 8, 441, 450, 560, 701
Bme1390I CCNGG 3 cut(s) 343, 629, 630
Bme18I GGWCC 2 cut(s) 289, 484
BmeT110I CYCGRG 1 cut(s) 628
BmgT120I GGNCC 2 cut(s) 289, 484
BmiI GGNNCC 1 cut(s) 486
BmrFI CCNGG 3 cut(s) 343, 629, 630
BmrI ACTGGG 1 cut(s) 763
BmuI ACTGGG 1 cut(s) 763
BpiI GAAGAC 1 cut(s) 645
BpuMI CCSGG 2 cut(s) 629, 630
BsaJI CCNNGG 2 cut(s) 342, 628
BsaWI WCCGGW 1 cut(s) 592
Bsc4I CCNNNNNNNGG 3 cut(s) 286, 493, 507
Bse118I RCCGGY 1 cut(s) 592
Bse1I ACTGG 2 cut(s) 663, 769
Bse3DI GCAATG 1 cut(s) 467
BseBI CCWGG 1 cut(s) 343
BseDI CCNNGG 2 cut(s) 342, 628
BseGI GGATG 3 cut(s) 254, 717, 748
BseLI CCNNNNNNNGG 3 cut(s) 286, 493, 507
BseMI GCAATG 1 cut(s) 467
BseNI ACTGG 2 cut(s) 663, 769
BseRI GAGGAG 1 cut(s) 109
BseXI GCAGC 2 cut(s) 460, 686
BseYI CCCAGC 1 cut(s) 298
Bsh1236I CGCG 1 cut(s) 732
BshTI ACCGGT 1 cut(s) 592
BsiHKAI GWGCWC 1 cut(s) 517
BsiHKCI CYCGRG 1 cut(s) 628
BsiSI CCGG 2 cut(s) 593, 629
BslFI GGGAC 1 cut(s) 764
BslI CCNNNNNNNGG 3 cut(s) 286, 493, 507
BsmAI GTCTC 1 cut(s) 202
BsmFI GGGAC 1 cut(s) 764
BsmI GAATGC 1 cut(s) 796
BsoBI CYCGRG 1 cut(s) 628
Bsp1286I GDGCHC 2 cut(s) 145, 517
Bsp143I GATC 1 cut(s) 714
BspACI CCGC 3 cut(s) 58, 440, 559
BspFNI CGCG 1 cut(s) 732
BspLI GGNNCC 1 cut(s) 486
BspQI GCTCTTC 2 cut(s) 16, 133
BsrDI GCAATG 1 cut(s) 467
BsrFI RCCGGY 1 cut(s) 592
BsrI ACTGG 2 cut(s) 663, 769
BssAI RCCGGY 1 cut(s) 592
BssECI CCNNGG 2 cut(s) 342, 628
BssMI GATC 1 cut(s) 714
Bst2UI CCWGG 1 cut(s) 343
Bst4CI ACNGT 2 cut(s) 284, 359
Bst6I CTCTTC 3 cut(s) 16, 133, 252
BstC8I GCNNGC 1 cut(s) 474
BstF5I GGATG 3 cut(s) 254, 717, 748
BstFNI CGCG 1 cut(s) 732
BstHHI GCGC 4 cut(s) 430, 537, 704, 732
BstKTI GATC 1 cut(s) 717
BstMAI GTCTC 1 cut(s) 202
BstMBI GATC 1 cut(s) 714
BstMWI GCNNNNNNNGC 4 cut(s) 436, 445, 448, 534
BstNI CCWGG 1 cut(s) 343
BstSCI CCNGG 3 cut(s) 341, 627, 628
BstUI CGCG 1 cut(s) 732
BstV1I GCAGC 2 cut(s) 460, 686
BstV2I GAAGAC 1 cut(s) 645
BtsCI GGATG 3 cut(s) 254, 717, 748
BtsI GCAGTG 1 cut(s) 542
BtsIMutI CAGTG 2 cut(s) 417, 542
Cac8I GCNNGC 1 cut(s) 474
CfoI GCGC 4 cut(s) 430, 537, 704, 732
Cfr10I RCCGGY 1 cut(s) 592
Cfr13I GGNCC 2 cut(s) 289, 484
Cfr9I CCCGGG 1 cut(s) 628
Csp6I GTAC 1 cut(s) 772
CspAI ACCGGT 1 cut(s) 592
CviJI RGCY 8 cut(s) 6, 107, 143, 302, 439, 515, 558, 737
CviKI_1 RGCY 8 cut(s) 6, 107, 143, 302, 439, 515, 558, 737
CviQI GTAC 1 cut(s) 772
DpnI GATC 1 cut(s) 716
DpnII GATC 1 cut(s) 714
DrdI GACNNNNNNGTC 1 cut(s) 647
DseDI GACNNNNNNGTC 1 cut(s) 647
Eam1104I CTCTTC 3 cut(s) 16, 133, 252
EarI CTCTTC 3 cut(s) 16, 133, 252
Ecl136II GAGCTC 1 cut(s) 515
Eco24I GRGCYC 2 cut(s) 145, 517
Eco47I GGWCC 2 cut(s) 289, 484
Eco53kI GAGCTC 1 cut(s) 515
Eco57I CTGAAG 3 cut(s) 87, 393, 703
Eco88I CYCGRG 1 cut(s) 628
EcoICRI GAGCTC 1 cut(s) 515
EcoRII CCWGG 1 cut(s) 341
EcoT38I GRGCYC 2 cut(s) 145, 517
FaiI YATR 7 cut(s) 113, 219, 268, 353, 422, 445, 507
FaqI GGGAC 1 cut(s) 764
FblI GTMKAC 1 cut(s) 654
Fnu4HI GCNGC 5 cut(s) 7, 440, 449, 559, 700
FokI GGATG 3 cut(s) 241, 724, 755
FriOI GRGCYC 2 cut(s) 145, 517
Fsp4HI GCNGC 5 cut(s) 7, 440, 449, 559, 700
FspBI CTAG 1 cut(s) 525
FspI TGCGCA 1 cut(s) 536
GlaI GCGC 4 cut(s) 429, 536, 703, 731
GluI GCNGC 5 cut(s) 7, 440, 449, 559, 700
GsaI CCCAGC 1 cut(s) 302
HapII CCGG 2 cut(s) 593, 629
HhaI GCGC 4 cut(s) 430, 537, 704, 732
Hin6I GCGC 4 cut(s) 428, 535, 702, 730
HinP1I GCGC 4 cut(s) 428, 535, 702, 730
HinfI GANTC 5 cut(s) 326, 371, 464, 675, 764
HpaII CCGG 2 cut(s) 593, 629
HphI GGTGA 4 cut(s) 114, 152, 196, 576
Hpy166II GTNNAC 1 cut(s) 655
Hpy188I TCNGA 4 cut(s) 137, 460, 680, 711
Hpy188III TCNNGA 2 cut(s) 287, 323
Hpy8I GTNNAC 1 cut(s) 655
Hpy99I CGWCG 1 cut(s) 653
HpyAV CCTTC 3 cut(s) 32, 261, 393
HpyCH4III ACNGT 2 cut(s) 284, 359
HpyCH4V TGCA 3 cut(s) 392, 787, 794
HpyF10VI GCNNNNNNNGC 4 cut(s) 436, 445, 448, 534
HspAI GCGC 4 cut(s) 428, 535, 702, 730
Kzo9I GATC 1 cut(s) 714
LguI GCTCTTC 2 cut(s) 16, 133
LmnI GCTCC 1 cut(s) 425
Lsp1109I GCAGC 2 cut(s) 460, 686
MaeI CTAG 1 cut(s) 525
MalI GATC 1 cut(s) 716
MboI GATC 1 cut(s) 714
MhlI GDGCHC 2 cut(s) 145, 517
MluCI AATT 5 cut(s) 416, 530, 568, 598, 604
MlyI GAGTC 2 cut(s) 320, 758
MseI TTAA 2 cut(s) 363, 552
MslI CAYNNNNRTG 1 cut(s) 758
MspI CCGG 2 cut(s) 593, 629
MspR9I CCNGG 3 cut(s) 343, 629, 630
Mva1269I GAATGC 1 cut(s) 796
MvaI CCWGG 1 cut(s) 343
MvnI CGCG 1 cut(s) 732
MwoI GCNNNNNNNGC 4 cut(s) 436, 445, 448, 534
NciI CCSGG 2 cut(s) 629, 630
NdeII GATC 1 cut(s) 714
NlaIV GGNNCC 1 cut(s) 486
NsbI TGCGCA 1 cut(s) 536
PciSI GCTCTTC 2 cut(s) 16, 133
PcsI WCGNNNNNNNCGW 1 cut(s) 363
PctI GAATGC 1 cut(s) 796
PfeI GAWTC 3 cut(s) 371, 464, 675
PflFI GACNNNGTC 1 cut(s) 329
PinAI ACCGGT 1 cut(s) 592
PkrI GCNGC 5 cut(s) 8, 441, 450, 560, 701
PleI GAGTC 2 cut(s) 320, 758
PpsI GAGTC 2 cut(s) 320, 758
Psp124BI GAGCTC 1 cut(s) 517
Psp6I CCWGG 1 cut(s) 341
PspFI CCCAGC 1 cut(s) 298
PspGI CCWGG 1 cut(s) 341
PspN4I GGNNCC 1 cut(s) 486
PspPI GGNCC 2 cut(s) 289, 484
PsyI GACNNNGTC 1 cut(s) 329
RsaI GTAC 1 cut(s) 773
RsaNI GTAC 1 cut(s) 772
RseI CAYNNNNRTG 1 cut(s) 758
SacI GAGCTC 1 cut(s) 517
SapI GCTCTTC 2 cut(s) 16, 133
SaqAI TTAA 2 cut(s) 363, 552
SatI GCNGC 5 cut(s) 7, 440, 449, 559, 700
Sau3AI GATC 1 cut(s) 714
Sau96I GGNCC 2 cut(s) 289, 484
SchI GAGTC 2 cut(s) 320, 758
ScrFI CCNGG 3 cut(s) 343, 629, 630
SduI GDGCHC 2 cut(s) 145, 517
SetI ASST 7 cut(s) 109, 169, 195, 209, 344, 517, 805
SinI GGWCC 2 cut(s) 289, 484
SmaI CCCGGG 1 cut(s) 630
SmiMI CAYNNNNRTG 1 cut(s) 758
Sse9I AATT 5 cut(s) 416, 530, 568, 598, 604
SsiI CCGC 3 cut(s) 58, 440, 559
SspMI CTAG 1 cut(s) 525
SstI GAGCTC 1 cut(s) 517
StyD4I CCNGG 3 cut(s) 341, 627, 628
TaaI ACNGT 2 cut(s) 284, 359
TaqI TCGA 1 cut(s) 237
TasI AATT 5 cut(s) 416, 530, 568, 598, 604
TatI WGTACW 1 cut(s) 771
TauI GCSGC 2 cut(s) 442, 561
TfiI GAWTC 3 cut(s) 371, 464, 675
Tru1I TTAA 2 cut(s) 363, 552
Tru9I TTAA 2 cut(s) 363, 552
TscAI CASTG 2 cut(s) 417, 549
TseI GCWGC 3 cut(s) 6, 448, 699
TspDTI ATGAA 4 cut(s) 146, 243, 384, 409
TspGWI ACGGA 2 cut(s) 218, 319
TspMI CCCGGG 1 cut(s) 628
TspRI CASTG 2 cut(s) 417, 549
Tth111I GACNNNGTC 1 cut(s) 329
VpaK11BI GGWCC 2 cut(s) 289, 484
XapI RAATTY 2 cut(s) 416, 598
XmaI CCCGGG 1 cut(s) 628
XmiI GTMKAC 1 cut(s) 654
XspI CTAG 1 cut(s) 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.