Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003515.1

Orthogroup ID

OG0008791

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1250

Gene Structure 1250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003515.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

atggcttcgattatcggagtttcctctatatactaccagactccatgtgagttgtataaaagagctgccgcgcctgtagctaccacgacggccccgacgacgagcagtggcggcggcggcggtgtttcgctggcttttccggagaggcagagggcgcacttcaacagtgttttgagagcgaggagtgttttcgctactcaggcgattgcgacgcccaattctgtgctcagtgaagaggccttcaaggggctaggggacttttcgaagggggagctggactcggagtcggagtatgagtcggagagtgatgtggttgagccggttagtaaagacgagctggctctttcgaaattgggcctgcctcagcggcttgcggatagtcttgagaggcgtggcatttcttcgctttttcccattcagagagctgtgctagtgccggcactggaaggtcgagacatcatagctcgtgcaaagactgggactgggaagacattggcctttgggattcccatacttaaacgccttacagaagatgatgaacagagaggttcaaggcggtctggttatcttcctagagttctggtccttgcacctactcgggagttagcgaagcaagtggacaaggagattaaagaatctgcaccttatctgaacactgtttgcgtctatggaggagtttcatacgtaacgcaacagagtgctctttctcgtggggttgacgtagtggttggaactcctggtcggcttattgacctgataaacggcggcagcctcaagttgggtgaagttcaatatttggtacttgatgaagctgatcagatgcttgctgttggatttgaggaagatgtggaaacaattctacaaaggctcccagctcagaggcagagcatgcttttttctgcaactatgcccacttgggtgaaaaaactagcacgaaaatatttggacaatccattgacgattgatttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010467 GO:0010501 GO:0016020 GO:0016043 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0034641 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

DEAD GUCT Helicase_C zf-CCHC

Protein Analysis

323

Amino Acids

34.98

Weight (kDa)

5.75

Isoelectric Point (pI)

41.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26742 AT5G26742 AT5G26742
fragaria_vesca	FvH4_6g08810 FvH4_6g08810 FvH4_6g08810 FvH4_6g08810
malus_domestica	MD04G1183400.v1.1 MD12G1196800.v1.1
prunus_persica	Prupe.6G301900_v2.0.a1
pyrus_communis	pycom04g16190 pycom12g18300
rosa_chinensis	RchiOBHm_Chr3g0459081
rosa_laevigata	RLG00000025121
rosa_multiflora	Rmu_sc0000466.1_g000002 Rmu_sc0003515.1_g000001
rosa_roxburghii	Rroxscaffold_6G00420530
rosa_rugosa	Rorug03G0033400
rosa_samantha	Rh3AG091300 Rh3BG094400 Rh3CG094800 Rh3DG094800
rosa_wichuraiana	Rw3G007840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	71
AccIII	TCCGGA	1 cut(s)	139
AciI	CCGC	9 cut(s)	69, 111, 114, 117, 120, 367, 374, 556, 765
AcyI	GRCGYC	1 cut(s)	212
AfaI	GTAC	1 cut(s)	801
AfiI	CCNNNNNNNGG	2 cut(s)	246, 778
AgsI	TTSAA	4 cut(s)	163, 244, 552, 791
AhdI	GACNNNNNGTC	1 cut(s)	283
AjnI	CCWGG	1 cut(s)	736
AleI	CACNNNNGTG	1 cut(s)	917
AluBI	AGCT	8 cut(s)	65, 80, 274, 337, 425, 464, 812, 875
AluI	AGCT	8 cut(s)	65, 80, 274, 337, 425, 464, 812, 875
Alw21I	GWGCWC	2 cut(s)	228, 703
Alw26I	GTCTC	1 cut(s)	447
Ama87I	CYCGRG	1 cut(s)	597
Aor13HI	TCCGGA	1 cut(s)	139
AoxI	GGCC	4 cut(s)	90, 237, 355, 495
ApeKI	GCWGC	2 cut(s)	65, 768
ArsI	GACNNNNNNTTYG	1 cut(s)	949
Asp700I	GAANNNNTTC	1 cut(s)	855
AspLEI	GCGC	2 cut(s)	73, 157
AspS9I	GGNCC	3 cut(s)	91, 355, 583
AsuHPI	GGTGA	2 cut(s)	794, 931
AsuII	TTCGAA	2 cut(s)	263, 347
AvaI	CYCGRG	1 cut(s)	597
AvaII	GGWCC	1 cut(s)	583
BauI	CACGAG	2 cut(s)	465, 708
BbsI	GAAGAC	1 cut(s)	494
Bbv12I	GWGCWC	2 cut(s)	228, 703
BbvCI	CCTCAGC	1 cut(s)	363
BbvI	GCAGC	2 cut(s)	52, 780
BceAI	ACGGC	2 cut(s)	105, 778
BciT130I	CCWGG	1 cut(s)	738
BclI	TGATCA	1 cut(s)	814
BcoDI	GTCTC	1 cut(s)	447
BfaI	CTAG	4 cut(s)	251, 431, 573, 929
BfmI	CTRYAG	1 cut(s)	75
BglI	GCCNNNNNGGC	1 cut(s)	367
BisI	GCNGC	8 cut(s)	66, 69, 112, 115, 118, 368, 766, 769
BlsI	GCNGC	8 cut(s)	67, 70, 113, 116, 119, 369, 767, 770
Bme1390I	CCNGG	1 cut(s)	738
Bme18I	GGWCC	1 cut(s)	583
BmeRI	GACNNNNNGTC	1 cut(s)	283
BmeT110I	CYCGRG	1 cut(s)	597
BmgT120I	GGNCC	3 cut(s)	91, 355, 583
BmiI	GGNNCC	2 cut(s)	93, 869
BmrFI	CCNGG	1 cut(s)	738
BmrI	ACTGGG	2 cut(s)	486, 492
BmsI	GCATC	1 cut(s)	810
BmuI	ACTGGG	2 cut(s)	486, 492
BpiI	GAAGAC	1 cut(s)	494
BplI	GAGNNNNNCTC	2 cut(s)	263, 295
Bpu10I	CCTNAGC	1 cut(s)	363
Bpu14I	TTCGAA	2 cut(s)	263, 347
BpuEI	CTTGAG	2 cut(s)	404, 758
BsaAI	YACGTR	1 cut(s)	685
BsaHI	GRCGYC	1 cut(s)	212
BsaWI	WCCGGW	1 cut(s)	139
BsaXI	ACNNNNNCTCC	6 cut(s)	275, 281, 305, 311, 852, 882
Bsc4I	CCNNNNNNNGG	2 cut(s)	246, 778
Bse118I	RCCGGY	2 cut(s)	319, 436
Bse1I	ACTGG	3 cut(s)	447, 481, 487
BseAI	TCCGGA	1 cut(s)	139
BseBI	CCWGG	1 cut(s)	738
BseLI	CCNNNNNNNGG	2 cut(s)	246, 778
BseMII	CTCAG	4 cut(s)	212, 241, 377, 890
BseNI	ACTGG	3 cut(s)	447, 481, 487
BseRI	GAGGAG	2 cut(s)	196, 687
BseXI	GCAGC	2 cut(s)	52, 780
BseYI	CCCAGC	1 cut(s)	871
BsgI	GTGCAG	1 cut(s)	624
Bsh1236I	CGCG	1 cut(s)	71
BshFI	GGCC	4 cut(s)	92, 239, 357, 497
BsiHKAI	GWGCWC	2 cut(s)	228, 703
BsiHKCI	CYCGRG	1 cut(s)	597
BsiSI	CCGG	3 cut(s)	140, 320, 437
BslFI	GGGAC	2 cut(s)	269, 493
BslI	CCNNNNNNNGG	2 cut(s)	246, 778
BsmAI	GTCTC	1 cut(s)	447
BsmFI	GGGAC	2 cut(s)	269, 493
BsnI	GGCC	4 cut(s)	92, 239, 357, 497
BsoBI	CYCGRG	1 cut(s)	597
Bsp119I	TTCGAA	2 cut(s)	263, 347
Bsp1286I	GDGCHC	2 cut(s)	228, 703
Bsp13I	TCCGGA	1 cut(s)	139
Bsp143I	GATC	1 cut(s)	814
BspACI	CCGC	9 cut(s)	69, 111, 114, 117, 120, 367, 374, 556, 765
BspANI	GGCC	4 cut(s)	92, 239, 357, 497
BspCNI	CTCAG	4 cut(s)	211, 240, 376, 889
BspEI	TCCGGA	1 cut(s)	139
BspFNI	CGCG	1 cut(s)	71
BspLI	GGNNCC	2 cut(s)	93, 869
BspT104I	TTCGAA	2 cut(s)	263, 347
BsrFI	RCCGGY	2 cut(s)	319, 436
BsrI	ACTGG	3 cut(s)	447, 481, 487
BssAI	RCCGGY	2 cut(s)	319, 436
BssMI	GATC	1 cut(s)	814
BssNI	GRCGYC	1 cut(s)	212
BssSI	CACGAG	2 cut(s)	465, 708
Bst2BI	CACGAG	2 cut(s)	465, 708
Bst2UI	CCWGG	1 cut(s)	738
Bst4CI	ACNGT	2 cut(s)	167, 658
Bst6I	CTCTTC	1 cut(s)	228
BstACI	GRCGYC	1 cut(s)	212
BstAPI	GCANNNNNTGC	1 cut(s)	889
BstBAI	YACGTR	1 cut(s)	685
BstBI	TTCGAA	2 cut(s)	263, 347
BstC8I	GCNNGC	7 cut(s)	132, 339, 359, 372, 438, 825, 890
BstDEI	CTNAG	4 cut(s)	198, 227, 363, 876
BstFNI	CGCG	1 cut(s)	71
BstHHI	GCGC	2 cut(s)	73, 157
BstKTI	GATC	1 cut(s)	817
BstMAI	GTCTC	1 cut(s)	447
BstMBI	GATC	1 cut(s)	814
BstMWI	GCNNNNNNNGC	7 cut(s)	77, 111, 117, 154, 200, 367, 889
BstNI	CCWGG	1 cut(s)	738
BstNSI	RCATGY	1 cut(s)	892
BstSCI	CCNGG	1 cut(s)	736
BstSFI	CTRYAG	1 cut(s)	75
BstSNI	TACGTA	1 cut(s)	685
BstUI	CGCG	1 cut(s)	71
BstV1I	GCAGC	2 cut(s)	52, 780
BstV2I	GAAGAC	1 cut(s)	494
BsuRI	GGCC	4 cut(s)	92, 239, 357, 497
BtsI	GCAGTG	1 cut(s)	112
BtsIMutI	CAGTG	5 cut(s)	112, 172, 235, 440, 654
Cac8I	GCNNGC	7 cut(s)	132, 339, 359, 372, 438, 825, 890
CfoI	GCGC	2 cut(s)	73, 157
Cfr10I	RCCGGY	2 cut(s)	319, 436
Cfr13I	GGNCC	3 cut(s)	91, 355, 583
CseI	GACGC	2 cut(s)	220, 652
Csp6I	GTAC	1 cut(s)	800
CviAII	CATG	2 cut(s)	45, 889
CviQI	GTAC	1 cut(s)	800
DdeI	CTNAG	4 cut(s)	198, 227, 363, 876
DpnI	GATC	1 cut(s)	816
DpnII	GATC	1 cut(s)	814
DriI	GACNNNNNGTC	1 cut(s)	283
Eam1104I	CTCTTC	1 cut(s)	228
Eam1105I	GACNNNNNGTC	1 cut(s)	283
EarI	CTCTTC	1 cut(s)	228
Eco105I	TACGTA	1 cut(s)	685
Eco147I	AGGCCT	1 cut(s)	239
Eco47I	GGWCC	1 cut(s)	583
Eco88I	CYCGRG	1 cut(s)	597
EcoRII	CCWGG	1 cut(s)	736
FaeI	CATG	2 cut(s)	48, 892
FaqI	GGGAC	2 cut(s)	269, 493
FatI	CATG	2 cut(s)	44, 888
FbaI	TGATCA	1 cut(s)	814
Fnu4HI	GCNGC	8 cut(s)	66, 69, 112, 115, 118, 368, 766, 769
Fsp4HI	GCNGC	8 cut(s)	66, 69, 112, 115, 118, 368, 766, 769
FspBI	CTAG	4 cut(s)	251, 431, 573, 929
GlaI	GCGC	2 cut(s)	72, 156
GluI	GCNGC	8 cut(s)	66, 69, 112, 115, 118, 368, 766, 769
GsaI	CCCAGC	1 cut(s)	875
HaeIII	GGCC	4 cut(s)	92, 239, 357, 497
HapII	CCGG	3 cut(s)	140, 320, 437
HgaI	GACGC	2 cut(s)	220, 652
HhaI	GCGC	2 cut(s)	73, 157
Hin1I	GRCGYC	1 cut(s)	212
Hin1II	CATG	2 cut(s)	48, 892
Hin6I	GCGC	2 cut(s)	71, 155
HinP1I	GCGC	2 cut(s)	71, 155
HincII	GTYRAC	1 cut(s)	718
HindII	GTYRAC	1 cut(s)	718
HinfI	GANTC	6 cut(s)	40, 278, 284, 296, 505, 635
HpaII	CCGG	3 cut(s)	140, 320, 437
HphI	GGTGA	2 cut(s)	794, 931
Hpy166II	GTNNAC	2 cut(s)	619, 718
Hpy188I	TCNGA	8 cut(s)	17, 283, 289, 301, 420, 651, 819, 879
Hpy188III	TCNNGA	4 cut(s)	140, 383, 452, 599
Hpy8I	GTNNAC	2 cut(s)	619, 718
Hpy99I	CGWCG	4 cut(s)	91, 100, 103, 214
HpyAV	CCTTC	3 cut(s)	250, 259, 440
HpyCH4III	ACNGT	2 cut(s)	167, 658
HpyCH4IV	ACGT	2 cut(s)	684, 720
HpyCH4V	TGCA	4 cut(s)	470, 590, 641, 902
HpyF10VI	GCNNNNNNNGC	7 cut(s)	77, 111, 117, 154, 200, 367, 889
HpyF3I	CTNAG	4 cut(s)	198, 227, 363, 876
HpySE526I	ACGT	2 cut(s)	684, 720
Hsp92I	GRCGYC	1 cut(s)	212
Hsp92II	CATG	2 cut(s)	48, 892
HspAI	GCGC	2 cut(s)	71, 155
Kpn2I	TCCGGA	1 cut(s)	139
KroI	GCCGGC	1 cut(s)	436
KroNI	GCCGGC	1 cut(s)	438
Ksp22I	TGATCA	1 cut(s)	814
Kzo9I	GATC	1 cut(s)	814
LmnI	GCTCC	2 cut(s)	271, 873
Lsp1109I	GCAGC	2 cut(s)	52, 780
LweI	GCATC	1 cut(s)	810
MaeI	CTAG	4 cut(s)	251, 431, 573, 929
MaeII	ACGT	2 cut(s)	684, 720
MaeIII	GTNAC	1 cut(s)	685
MalI	GATC	1 cut(s)	816
MboI	GATC	1 cut(s)	814
MboII	GAAGA	6 cut(s)	245, 393, 499, 542, 560, 854
MhlI	GDGCHC	2 cut(s)	228, 703
MluCI	AATT	3 cut(s)	217, 350, 855
MlyI	GAGTC	4 cut(s)	34, 272, 293, 305
MmeI	TCCRAC	4 cut(s)	267, 279, 709, 811
MroI	TCCGGA	1 cut(s)	139
MroNI	GCCGGC	1 cut(s)	436
MroXI	GAANNNNTTC	1 cut(s)	855
MseI	TTAA	2 cut(s)	516, 630
MslI	CAYNNNNRTG	1 cut(s)	917
MspA1I	CMGCKG	1 cut(s)	367
MspI	CCGG	3 cut(s)	140, 320, 437
MspR9I	CCNGG	1 cut(s)	738
MvaI	CCWGG	1 cut(s)	738
MvnI	CGCG	1 cut(s)	71
MwoI	GCNNNNNNNGC	7 cut(s)	77, 111, 117, 154, 200, 367, 889
NaeI	GCCGGC	1 cut(s)	438
NdeII	GATC	1 cut(s)	814
NgoMIV	GCCGGC	1 cut(s)	436
NlaIII	CATG	2 cut(s)	48, 892
NlaIV	GGNNCC	2 cut(s)	93, 869
NspI	RCATGY	1 cut(s)	892
NspV	TTCGAA	2 cut(s)	263, 347
OliI	CACNNNNGTG	1 cut(s)	917
PaeI	GCATGC	1 cut(s)	892
PceI	AGGCCT	1 cut(s)	239
PcsI	WCGNNNNNNNCGW	2 cut(s)	92, 95
PdiI	GCCGGC	1 cut(s)	438
PdmI	GAANNNNTTC	1 cut(s)	855
PfeI	GAWTC	2 cut(s)	505, 635
PkrI	GCNGC	8 cut(s)	67, 70, 113, 116, 119, 369, 767, 770
PleI	GAGTC	4 cut(s)	34, 272, 292, 304
PpsI	GAGTC	4 cut(s)	34, 272, 292, 304
Ppu21I	YACGTR	1 cut(s)	685
Psp6I	CCWGG	1 cut(s)	736
PspFI	CCCAGC	1 cut(s)	871
PspGI	CCWGG	1 cut(s)	736
PspN4I	GGNNCC	2 cut(s)	93, 869
PspPI	GGNCC	3 cut(s)	91, 355, 583
RsaI	GTAC	1 cut(s)	801
RsaNI	GTAC	1 cut(s)	800
RseI	CAYNNNNRTG	1 cut(s)	917
SaqAI	TTAA	2 cut(s)	516, 630
SatI	GCNGC	8 cut(s)	66, 69, 112, 115, 118, 368, 766, 769
Sau3AI	GATC	1 cut(s)	814
Sau96I	GGNCC	3 cut(s)	91, 355, 583
SchI	GAGTC	4 cut(s)	34, 272, 293, 305
ScrFI	CCNGG	1 cut(s)	738
SduI	GDGCHC	2 cut(s)	228, 703
SfaNI	GCATC	1 cut(s)	810
SfcI	CTRYAG	1 cut(s)	75
SfuI	TTCGAA	2 cut(s)	263, 347
SinI	GGWCC	1 cut(s)	583
SmiMI	CAYNNNNRTG	1 cut(s)	917
SmlI	CTYRAG	2 cut(s)	383, 773
SmoI	CTYRAG	2 cut(s)	383, 773
SnaBI	TACGTA	1 cut(s)	685
SphI	GCATGC	1 cut(s)	892
Sse9I	AATT	3 cut(s)	217, 350, 855
SseBI	AGGCCT	1 cut(s)	239
SsiI	CCGC	9 cut(s)	69, 111, 114, 117, 120, 367, 374, 556, 765
SspI	AATATT	2 cut(s)	794, 941
SspMI	CTAG	4 cut(s)	251, 431, 573, 929
StuI	AGGCCT	1 cut(s)	239
StyD4I	CCNGG	1 cut(s)	736
TaaI	ACNGT	2 cut(s)	167, 658
TaiI	ACGT	2 cut(s)	687, 723
TaqI	TCGA	4 cut(s)	8, 263, 347, 451
TasI	AATT	3 cut(s)	217, 350, 855
TauI	GCSGC	6 cut(s)	71, 114, 117, 120, 370, 768
TfiI	GAWTC	2 cut(s)	505, 635
Tru1I	TTAA	2 cut(s)	516, 630
Tru9I	TTAA	2 cut(s)	516, 630
TscAI	CASTG	5 cut(s)	112, 172, 235, 447, 661
TseI	GCWGC	2 cut(s)	65, 768
TspDTI	ATGAA	3 cut(s)	552, 669, 822
TspRI	CASTG	5 cut(s)	112, 172, 235, 447, 661
VpaK11BI	GGWCC	1 cut(s)	583
XceI	RCATGY	1 cut(s)	892
XmnI	GAANNNNTTC	1 cut(s)	855
XspI	CTAG	4 cut(s)	251, 431, 573, 929

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.