Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0008791

Physical Location & Seq

Genomic Coordinates Forward (+)

7277277 .. 7281978

Gene Structure 4702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G007840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2208 bp

ATGGCTTCGATTATCGGAGTTTCCTCCATATACTACCAGACTCCATGTGAGTTGTATAAAAGAGCTGCCGCGCCTGTAGCTACCACGACGGCCCCGACGACGAGCAGTGGCGGCGGTGTTTCGTTGGCTTTTCCGGAGAGGCAGAGGGCGCACTTCAACAGTGTTTTGAGAGCGAGGAGTGTTTTCGCTACTCAGGCGATTGCGACGCCTAATTCTGTGCTCAGTGAAGAGGCCTTCAAGGGGCTAGGGGACTTTTCGAAGGGGGAGCTGGACTCGGAGTCGGAGTATGAGTCGGAGAGTGATGTGGTTGAGCCGGTTAGTAAAGACGAGCTGGCTCTTTCGAAATTGGGCCTGCCTCAGCGGCTTGCGGATAGTCTTGAGAGGCGTGGCATTTCTTCGCTTTTTCCCATTCAGAGAGCCGTGCTAGTGCCGGCACTGGAAGGTCGAGACATCATAGCTCGTGCAAAGACTGGGACTGGGAAGACATTGGCCTTTGGGATTCCCATACTTAAACGCCTTACAGAAGATGATGAACAGAGAGGTTCAAGGCGGTCTGGTTATCTTCCTAGAGTTTTGGTCCTTGCACCAACTCGGGAGTTAGCAAAGCAAGTGGAGAAGGAGATTAAAGAATCTGCACCTTATCTGAACACTGTTTGTGTCTATGGAGGAGTTTCATACGTAACGCAACAGAGTGCTCTTTCTCGTGGGGTTGACGTAGTGGTTGGAACTCCTGGTCGGCTTATTGACCTGATAAACGGTGGCAGCCTCAAGTTGGGTGAAGTTCAATATTTGGTACTTGATGAAGCTGATCAGATGCTTGCTGTTGGATTTGAGGAAGATGTGGAAACAATTCTACAAAGGCTCCCAGCTCAGAGGCAGAGCATGCTTTTTTCTGCAACTATGCCCACTGGTGCTACATTTTCTGTTTCTTATTTCTCGAAGGTTGGTGATCAAGATGAGAAGCTTGCAGAAGGGATCAAACTCTATGCTCTATCAACCACAAACTCTTCAAAGCGGACTATTCTTAGTGATCTTATAACAGTTTATGCAAAGGGTGGGAAGACCATTGTTTTTACACAAACGAAACGTGATGCTGATGAAGTGTCAATGTCATTAACGACTAGCATAGCTTCTGAGGCATTGCATGGAGATATATCACAACATCAAAGGGAGAGAACCCTTAATGGTTTTCGGCAAGGAAAATTCACTGTGCTCGTTGCCACTGATGTTGCATCCCGTGGACTTGATATTCCCAACGTTGACTTGAGACATTTGTTACATCGCTCTGGTCGTACTGGACGTGCAGGGAAACTCGGTAATGCCGTTTTGATGTTTACTAATAACCAGAGGAGAACAGTCAAAACTCTTGAGCGTGATGTGGGATGCAGGTTTGAGTTTGTTACTCCGCCAACCGTTGAGGAGGTTTTGGAGTCATCTGCTTCACATGTGGTTGCTACTCTCAATGGGGTTCATCCCGAATCTATACAGTTTTTTACACCGACGGCACAGAGACTGATTGAAGAACAGGGAACAACTGCTCTTGCTGCTGCACTGGCACAGCTAAGTGGATTTTCCCGACCTCCGTCATCCCGGTCTCTAATCAGTCATGAGCCGGGGTGGACGACATTGCAAATAATTCGGGATCCAGCTTTTGCCAGAGGTTACCTGTCTGCTAGATCTGTCACTGGGTTTCTTTCAGATGTTTATTCTGCAGCTGCTGATGAACTTGGAAAAATATATTTAATTGCAGATGAAAGGGTTCAAGGAGCAGTTTTTGATCTTCCAGAGGAGATTGCAAAAGAGTTGCTGAAGAGGCAAATACCTCCTGGAAACAGTATTTCCAAGATCAGCAAGTTGCCTCCTCTGCAAGATGACGGGCCAGTGAGTGACAACTATGGCAGGTTTTCAGCTAGGGATCGGAGTAGTAGTGGTGGACGGGGAGGTTTTAGAAGTAGCTCTAGGGGTGGATGGGGAGGCGGCCGAGGTTCTAGTGATGGTGATGATGATTTTAGGAGTAGCAGAGGAAGTTTTAATAGATCTAGCAGCAGCCGACCTCGGATGACAAGAAGTATGGATGATGATTGGCTTATTGGAGGTACACGAACAGGCAGAATACCACCACGAGACAGAAGCTTTGGAGGTTCCTGTTTCAATTGTGGGCAGTCTGGGCACAGGGCATCAGAGTGTCCTCAGAAACAAGGATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010467 GO:0010501 GO:0016020 GO:0016043 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0034641 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

DEAD GUCT Helicase_C zf-CCHC

Protein Analysis

735

Amino Acids

79.56

Weight (kDa)

8.68

Isoelectric Point (pI)

45.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	136 - 303	1.4e-45	DEAD/DEAH box helicase
ResIII	PF04851	149 - 301	1.5e-06	Type III restriction enzyme, res subunit
Helicase_C	PF00271	338 - 436	6e-20	Helicase conserved C-terminal domain
DD_DDX21-DDX50	PF26142	471 - 520	1e-16	DDX21/DDX50 dimerisation domain
GUCT	PF08152	523 - 623	1.8e-14	GUCT (NUC152) domain
zf-CCHC	PF00098	715 - 731	1.1e-06	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0008791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26742 AT5G26742 AT5G26742
fragaria_vesca	FvH4_6g08810 FvH4_6g08810 FvH4_6g08810 FvH4_6g08810
malus_domestica	MD04G1183400.v1.1 MD12G1196800.v1.1
prunus_persica	Prupe.6G301900_v2.0.a1
pyrus_communis	pycom04g16190 pycom12g18300
rosa_chinensis	RchiOBHm_Chr3g0459081
rosa_laevigata	RLG00000025121
rosa_multiflora	Rmu_sc0000466.1_g000002 Rmu_sc0003515.1_g000001
rosa_roxburghii	Rroxscaffold_6G00420530
rosa_rugosa	Rorug03G0033400
rosa_samantha	Rh3AG091300 Rh3BG094400 Rh3CG094800 Rh3DG094800
rosa_wichuraiana	Rw3G007840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1037
Acc36I	ACCTGC	2 cut(s)	1377, 1890
AccII	CGCG	1 cut(s)	71
AccIII	TCCGGA	1 cut(s)	133
AciI	CCGC	9 cut(s)	69, 111, 114, 361, 368, 550, 1015, 1406, 1977
AclI	AACGTT	1 cut(s)	1257
AclWI	GGATC	4 cut(s)	983, 1637, 1650, 1923
AcoI	YGGCCR	1 cut(s)	1978
AcsI	RAATTY	1 cut(s)	1202
AcuI	CTGAAG	1 cut(s)	1829
AcyI	GRCGYC	1 cut(s)	206
AfaI	GTAC	3 cut(s)	795, 1294, 2098
AfiI	CCNNNNNNNGG	2 cut(s)	240, 772
AflIII	ACRYGT	1 cut(s)	1444
AgsI	TTSAA	8 cut(s)	157, 238, 546, 785, 1011, 1520, 1763, 2152
AhdI	GACNNNNNGTC	1 cut(s)	277
AjiI	CACGTC	1 cut(s)	1301
AjnI	CCWGG	2 cut(s)	730, 1825
Alw21I	GWGCWC	3 cut(s)	222, 697, 1215
Alw26I	GTCTC	5 cut(s)	441, 1261, 1504, 1599, 2118
AlwI	GGATC	4 cut(s)	983, 1637, 1650, 1923
AlwNI	CAGNNNCTG	2 cut(s)	1513, 1718
Ama87I	CYCGRG	1 cut(s)	591
Aor13HI	TCCGGA	1 cut(s)	133
AoxI	GGCC	6 cut(s)	90, 231, 349, 489, 1877, 1978
ApeKI	GCWGC	8 cut(s)	65, 762, 1544, 1547, 1712, 1715, 2043, 2046
ApoI	RAATTY	1 cut(s)	1202
ArsI	GACNNNNNNTTYG	2 cut(s)	2117, 2149
Asp700I	GAANNNNTTC	2 cut(s)	849, 1758
AspLEI	GCGC	2 cut(s)	73, 151
AspS9I	GGNCC	4 cut(s)	91, 349, 577, 1877
AsuC2I	CCSGG	2 cut(s)	1591, 1614
AsuHPI	GGTGA	3 cut(s)	788, 959, 2009
AsuII	TTCGAA	2 cut(s)	257, 341
AvaI	CYCGRG	1 cut(s)	591
AvaII	GGWCC	1 cut(s)	577
BaeGI	GKGCMC	1 cut(s)	2172
BamHI	GGATCC	1 cut(s)	1642
BauI	CACGAG	3 cut(s)	459, 702, 2121
BbsI	GAAGAC	2 cut(s)	488, 1067
Bbv12I	GWGCWC	3 cut(s)	222, 697, 1215
BbvCI	CCTCAGC	1 cut(s)	357
BbvI	GCAGC	8 cut(s)	52, 774, 1531, 1534, 1702, 1724, 2055, 2058
BccI	CCATC	2 cut(s)	1962, 1988
BceAI	ACGGC	4 cut(s)	105, 404, 1307, 1518
BcgI	CGANNNNNNTGC	2 cut(s)	1619, 1653
BciT130I	CCWGG	2 cut(s)	732, 1827
BclI	TGATCA	2 cut(s)	808, 949
BcnI	CCSGG	2 cut(s)	1591, 1614
BcoDI	GTCTC	5 cut(s)	441, 1261, 1504, 1599, 2118
BfaI	CTAG	9 cut(s)	245, 425, 567, 1122, 1674, 1911, 1959, 1989, 2040
BfmI	CTRYAG	2 cut(s)	75, 1710
BfuAI	ACCTGC	2 cut(s)	1377, 1890
BglI	GCCNNNNNGGC	1 cut(s)	361
BglII	AGATCT	2 cut(s)	1676, 2036
Bme1390I	CCNGG	4 cut(s)	732, 1591, 1614, 1827
Bme18I	GGWCC	1 cut(s)	577
BmeRI	GACNNNNNGTC	1 cut(s)	277
BmeT110I	CYCGRG	1 cut(s)	591
BmgBI	CACGTC	1 cut(s)	1301
BmgT120I	GGNCC	4 cut(s)	91, 349, 577, 1877
BmiI	GGNNCC	4 cut(s)	93, 863, 1644, 2143
BmrFI	CCNGG	4 cut(s)	732, 1591, 1614, 1827
BmrI	ACTGGG	3 cut(s)	480, 486, 1695
BmsI	GCATC	5 cut(s)	804, 1081, 1241, 1373, 2186
BmuI	ACTGGG	3 cut(s)	480, 486, 1695
BoxI	GACNNNNGTC	1 cut(s)	1582
BpiI	GAAGAC	2 cut(s)	488, 1067
BplI	GAGNNNNNCTC	2 cut(s)	257, 289
Bpu10I	CCTNAGC	1 cut(s)	357
Bpu14I	TTCGAA	2 cut(s)	257, 341
BpuEI	CTTGAG	4 cut(s)	398, 752, 1285, 1388
BpuMI	CCSGG	2 cut(s)	1591, 1614
BsaAI	YACGTR	1 cut(s)	679
BsaHI	GRCGYC	1 cut(s)	206
BsaI	GGTCTC	1 cut(s)	1599
BsaJI	CCNNGG	4 cut(s)	1237, 1613, 1981, 2054
BsaWI	WCCGGW	1 cut(s)	133
BsaXI	ACNNNNNCTCC	8 cut(s)	269, 275, 299, 305, 846, 876, 1912, 1942
Bsc4I	CCNNNNNNNGG	2 cut(s)	240, 772
Bse118I	RCCGGY	2 cut(s)	313, 430
Bse1I	ACTGG	8 cut(s)	441, 475, 481, 913, 1300, 1557, 1690, 1880
Bse3DI	GCAATG	2 cut(s)	1139, 1625
BseAI	TCCGGA	1 cut(s)	133
BseBI	CCWGG	2 cut(s)	732, 1827
BseDI	CCNNGG	4 cut(s)	1237, 1613, 1981, 2054
BseGI	GGATG	7 cut(s)	1232, 1388, 1471, 1586, 1973, 2064, 2080
BseLI	CCNNNNNNNGG	2 cut(s)	240, 772
BseMI	GCAATG	2 cut(s)	1139, 1625
BseMII	CTCAG	6 cut(s)	206, 235, 371, 884, 1125, 2204
BseNI	ACTGG	8 cut(s)	441, 475, 481, 913, 1300, 1557, 1690, 1880
BseRI	GAGGAG	6 cut(s)	190, 681, 1363, 1433, 1802, 1851
BseSI	GKGCMC	1 cut(s)	2172
BseX3I	CGGCCG	1 cut(s)	1978
BseXI	GCAGC	8 cut(s)	52, 774, 1531, 1534, 1702, 1724, 2055, 2058
BseYI	CCCAGC	1 cut(s)	865
BsgI	GTGCAG	3 cut(s)	618, 1323, 1533
Bsh1236I	CGCG	1 cut(s)	71
Bsh1285I	CGRYCG	1 cut(s)	1981
BshFI	GGCC	6 cut(s)	92, 233, 351, 491, 1879, 1980
BsiEI	CGRYCG	1 cut(s)	1981
BsiHKAI	GWGCWC	3 cut(s)	222, 697, 1215
BsiHKCI	CYCGRG	1 cut(s)	591
BsiSI	CCGG	5 cut(s)	134, 314, 431, 1591, 1613
BslFI	GGGAC	2 cut(s)	263, 487
BslI	CCNNNNNNNGG	2 cut(s)	240, 772
BsmAI	GTCTC	5 cut(s)	441, 1261, 1504, 1599, 2118
BsmFI	GGGAC	2 cut(s)	263, 487
BsnI	GGCC	6 cut(s)	92, 233, 351, 491, 1879, 1980
Bso31I	GGTCTC	1 cut(s)	1599
BsoBI	CYCGRG	1 cut(s)	591
Bsp119I	TTCGAA	2 cut(s)	257, 341
Bsp1286I	GDGCHC	4 cut(s)	222, 697, 1215, 2172
Bsp13I	TCCGGA	1 cut(s)	133
BspACI	CCGC	9 cut(s)	69, 111, 114, 361, 368, 550, 1015, 1406, 1977
BspANI	GGCC	6 cut(s)	92, 233, 351, 491, 1879, 1980
BspCNI	CTCAG	6 cut(s)	205, 234, 370, 883, 1126, 2203
BspEI	TCCGGA	1 cut(s)	133
BspFNI	CGCG	1 cut(s)	71
BspHI	TCATGA	1 cut(s)	1606
BspLI	GGNNCC	4 cut(s)	93, 863, 1644, 2143
BspMAI	CTGCAG	1 cut(s)	1714
BspMI	ACCTGC	2 cut(s)	1377, 1890
BspPI	GGATC	4 cut(s)	983, 1637, 1650, 1923
BspT104I	TTCGAA	2 cut(s)	257, 341
BspTNI	GGTCTC	1 cut(s)	1599
BsrDI	GCAATG	2 cut(s)	1139, 1625
BsrFI	RCCGGY	2 cut(s)	313, 430
BsrI	ACTGG	8 cut(s)	441, 475, 481, 913, 1300, 1557, 1690, 1880
BssAI	RCCGGY	2 cut(s)	313, 430
BssECI	CCNNGG	4 cut(s)	1237, 1613, 1981, 2054
BssNI	GRCGYC	1 cut(s)	206
BssSI	CACGAG	3 cut(s)	459, 702, 2121
Bst2BI	CACGAG	3 cut(s)	459, 702, 2121
Bst2UI	CCWGG	2 cut(s)	732, 1827
Bst4CI	ACNGT	9 cut(s)	161, 652, 758, 1042, 1210, 1357, 1414, 1488, 1835
Bst6I	CTCTTC	3 cut(s)	222, 1012, 1805
BstACI	GRCGYC	1 cut(s)	206
BstAPI	GCANNNNNTGC	1 cut(s)	883
BstBAI	YACGTR	1 cut(s)	679
BstBI	TTCGAA	2 cut(s)	257, 341
BstC8I	GCNNGC	7 cut(s)	333, 353, 366, 432, 819, 884, 966
BstDEI	CTNAG	8 cut(s)	192, 221, 357, 870, 1025, 1134, 1562, 2190
BstDSI	CCRYGG	1 cut(s)	1237
BstEII	GGTNACC	1 cut(s)	1661
BstF5I	GGATG	7 cut(s)	1232, 1388, 1471, 1586, 1973, 2064, 2080
BstFNI	CGCG	1 cut(s)	71
BstHHI	GCGC	2 cut(s)	73, 151
BstMAI	GTCTC	5 cut(s)	441, 1261, 1504, 1599, 2118
BstMCI	CGRYCG	1 cut(s)	1981
BstNI	CCWGG	2 cut(s)	732, 1827
BstNSI	RCATGY	2 cut(s)	886, 1448
BstPAI	GACNNNNGTC	1 cut(s)	1582
BstPI	GGTNACC	1 cut(s)	1661
BstSCI	CCNGG	4 cut(s)	730, 1589, 1612, 1825
BstSFI	CTRYAG	2 cut(s)	75, 1710
BstSLI	GKGCMC	1 cut(s)	2172
BstSNI	TACGTA	1 cut(s)	679
BstUI	CGCG	1 cut(s)	71
BstV1I	GCAGC	8 cut(s)	52, 774, 1531, 1534, 1702, 1724, 2055, 2058
BstV2I	GAAGAC	2 cut(s)	488, 1067
BstX2I	RGATCY	3 cut(s)	1642, 1676, 2036
BstYI	RGATCY	3 cut(s)	1642, 1676, 2036
BstZI	CGGCCG	1 cut(s)	1978
BsuRI	GGCC	6 cut(s)	92, 233, 351, 491, 1879, 1980
BtgI	CCRYGG	1 cut(s)	1237
BtgZI	GCGATG	1 cut(s)	1265
BtrI	CACGTC	1 cut(s)	1301
BtsCI	GGATG	7 cut(s)	1232, 1388, 1471, 1586, 1973, 2064, 2080
BtsI	GCAGTG	1 cut(s)	112
BveI	ACCTGC	2 cut(s)	1377, 1890
Cac8I	GCNNGC	7 cut(s)	333, 353, 366, 432, 819, 884, 966
CaiI	CAGNNNCTG	2 cut(s)	1513, 1718
CciI	TCATGA	1 cut(s)	1606
CfoI	GCGC	2 cut(s)	73, 151
Cfr10I	RCCGGY	2 cut(s)	313, 430
Cfr13I	GGNCC	4 cut(s)	91, 349, 577, 1877
CseI	GACGC	1 cut(s)	214
Csp6I	GTAC	3 cut(s)	794, 1293, 2097
CspCI	CAANNNNNGTGG	4 cut(s)	591, 626, 1210, 1245
CviAII	CATG	5 cut(s)	45, 883, 1145, 1445, 1607
CviQI	GTAC	3 cut(s)	794, 1293, 2097
DdeI	CTNAG	8 cut(s)	192, 221, 357, 870, 1025, 1134, 1562, 2190
DriI	GACNNNNNGTC	1 cut(s)	277
EaeI	YGGCCR	1 cut(s)	1978
EagI	CGGCCG	1 cut(s)	1978
Eam1104I	CTCTTC	3 cut(s)	222, 1012, 1805
Eam1105I	GACNNNNNGTC	1 cut(s)	277
EarI	CTCTTC	3 cut(s)	222, 1012, 1805
EciI	GGCGGA	1 cut(s)	1395
EclXI	CGGCCG	1 cut(s)	1978
Eco105I	TACGTA	1 cut(s)	679
Eco147I	AGGCCT	1 cut(s)	233
Eco31I	GGTCTC	1 cut(s)	1599
Eco47I	GGWCC	1 cut(s)	577
Eco52I	CGGCCG	1 cut(s)	1978
Eco57I	CTGAAG	1 cut(s)	1829
Eco88I	CYCGRG	1 cut(s)	591
Eco91I	GGTNACC	1 cut(s)	1661
EcoO65I	GGTNACC	1 cut(s)	1661
EcoRII	CCWGG	2 cut(s)	730, 1825
FaeI	CATG	5 cut(s)	48, 886, 1148, 1448, 1610
FaqI	GGGAC	2 cut(s)	263, 487
FatI	CATG	5 cut(s)	44, 882, 1144, 1444, 1606
FbaI	TGATCA	2 cut(s)	808, 949
FokI	GGATG	7 cut(s)	1219, 1395, 1458, 1573, 1980, 2071, 2087
FspBI	CTAG	9 cut(s)	245, 425, 567, 1122, 1674, 1911, 1959, 1989, 2040
GlaI	GCGC	2 cut(s)	72, 150
GsaI	CCCAGC	1 cut(s)	869
HaeIII	GGCC	6 cut(s)	92, 233, 351, 491, 1879, 1980
HapII	CCGG	5 cut(s)	134, 314, 431, 1591, 1613
HgaI	GACGC	1 cut(s)	214
HhaI	GCGC	2 cut(s)	73, 151
Hin1I	GRCGYC	1 cut(s)	206
Hin1II	CATG	5 cut(s)	48, 886, 1148, 1448, 1610
Hin6I	GCGC	2 cut(s)	71, 149
HinP1I	GCGC	2 cut(s)	71, 149
HincII	GTYRAC	2 cut(s)	712, 1261
HindII	GTYRAC	2 cut(s)	712, 1261
HindIII	AAGCTT	2 cut(s)	962, 2131
HinfI	GANTC	8 cut(s)	40, 272, 278, 290, 499, 629, 1430, 1478
HpaII	CCGG	5 cut(s)	134, 314, 431, 1591, 1613
HphI	GGTGA	3 cut(s)	788, 959, 2009
Hpy166II	GTNNAC	7 cut(s)	712, 1241, 1261, 1335, 1620, 1934, 2099
Hpy8I	GTNNAC	7 cut(s)	712, 1241, 1261, 1335, 1620, 1934, 2099
Hpy99I	CGWCG	5 cut(s)	91, 100, 103, 208, 1504
HpyAV	CCTTC	6 cut(s)	244, 253, 434, 610, 934, 965
HpyCH4III	ACNGT	9 cut(s)	161, 652, 758, 1042, 1210, 1357, 1414, 1488, 1835
HpyCH4IV	ACGT	5 cut(s)	678, 714, 1087, 1257, 1300
HpyF3I	CTNAG	8 cut(s)	192, 221, 357, 870, 1025, 1134, 1562, 2190
HpySE526I	ACGT	5 cut(s)	678, 714, 1087, 1257, 1300
Hsp92I	GRCGYC	1 cut(s)	206
Hsp92II	CATG	5 cut(s)	48, 886, 1148, 1448, 1610
HspAI	GCGC	2 cut(s)	71, 149
Kpn2I	TCCGGA	1 cut(s)	133
KroI	GCCGGC	1 cut(s)	430
KroNI	GCCGGC	1 cut(s)	432
Ksp22I	TGATCA	2 cut(s)	808, 949
LmnI	GCTCC	3 cut(s)	265, 867, 1766
Lsp1109I	GCAGC	8 cut(s)	52, 774, 1531, 1534, 1702, 1724, 2055, 2058
LweI	GCATC	5 cut(s)	804, 1081, 1241, 1373, 2186
MaeI	CTAG	9 cut(s)	245, 425, 567, 1122, 1674, 1911, 1959, 1989, 2040
MaeII	ACGT	5 cut(s)	678, 714, 1087, 1257, 1300
MaeIII	GTNAC	6 cut(s)	679, 1275, 1399, 1661, 1681, 1886
MfeI	CAATTG	1 cut(s)	2152
MflI	RGATCY	3 cut(s)	1642, 1676, 2036
MhlI	GDGCHC	4 cut(s)	222, 697, 1215, 2172
MluCI	AATT	7 cut(s)	211, 344, 849, 1202, 1635, 1743, 2152
MlyI	GAGTC	5 cut(s)	34, 266, 287, 299, 1439
MmeI	TCCRAC	4 cut(s)	261, 273, 703, 805
MroI	TCCGGA	1 cut(s)	133
MroNI	GCCGGC	1 cut(s)	430
MroXI	GAANNNNTTC	2 cut(s)	849, 1758
MseI	TTAA	6 cut(s)	510, 624, 1115, 1182, 1742, 2031
MslI	CAYNNNNRTG	1 cut(s)	2182
MspA1I	CMGCKG	2 cut(s)	361, 1715
MspI	CCGG	5 cut(s)	134, 314, 431, 1591, 1613
MspR9I	CCNGG	4 cut(s)	732, 1591, 1614, 1827
MunI	CAATTG	1 cut(s)	2152
MvaI	CCWGG	2 cut(s)	732, 1827
MvnI	CGCG	1 cut(s)	71
NaeI	GCCGGC	1 cut(s)	432
NciI	CCSGG	2 cut(s)	1591, 1614
NgoMIV	GCCGGC	1 cut(s)	430
NlaIII	CATG	5 cut(s)	48, 886, 1148, 1448, 1610
NlaIV	GGNNCC	4 cut(s)	93, 863, 1644, 2143
NmeAIII	GCCGAG	1 cut(s)	2006
NmuCI	GTSAC	2 cut(s)	1681, 1886
NspI	RCATGY	2 cut(s)	886, 1448
NspV	TTCGAA	2 cut(s)	257, 341
PaeI	GCATGC	1 cut(s)	886
PagI	TCATGA	1 cut(s)	1606
PceI	AGGCCT	1 cut(s)	233
PciI	ACATGT	1 cut(s)	1444
PcsI	WCGNNNNNNNCGW	5 cut(s)	92, 95, 1288, 1297, 1320
PdiI	GCCGGC	1 cut(s)	432
PdmI	GAANNNNTTC	2 cut(s)	849, 1758
PfeI	GAWTC	3 cut(s)	499, 629, 1478
PfoI	TCCNGGA	1 cut(s)	1825
PleI	GAGTC	5 cut(s)	34, 266, 286, 298, 1438
PpsI	GAGTC	5 cut(s)	34, 266, 286, 298, 1438
Ppu21I	YACGTR	1 cut(s)	679
PscI	ACATGT	1 cut(s)	1444
PshAI	GACNNNNGTC	1 cut(s)	1582
PsiI	TTATAA	1 cut(s)	1037
Psp1406I	AACGTT	1 cut(s)	1257
Psp6I	CCWGG	2 cut(s)	730, 1825
PspEI	GGTNACC	1 cut(s)	1661
PspFI	CCCAGC	1 cut(s)	865
PspGI	CCWGG	2 cut(s)	730, 1825
PspN4I	GGNNCC	4 cut(s)	93, 863, 1644, 2143
PspPI	GGNCC	4 cut(s)	91, 349, 577, 1877
PstI	CTGCAG	1 cut(s)	1714
PstNI	CAGNNNCTG	2 cut(s)	1513, 1718
PsuI	RGATCY	3 cut(s)	1642, 1676, 2036
PvuII	CAGCTG	1 cut(s)	1715
RsaI	GTAC	3 cut(s)	795, 1294, 2098
RsaNI	GTAC	3 cut(s)	794, 1293, 2097
RseI	CAYNNNNRTG	1 cut(s)	2182
SaqAI	TTAA	6 cut(s)	510, 624, 1115, 1182, 1742, 2031
Sau96I	GGNCC	4 cut(s)	91, 349, 577, 1877
SchI	GAGTC	5 cut(s)	34, 266, 287, 299, 1439
ScrFI	CCNGG	4 cut(s)	732, 1591, 1614, 1827
SduI	GDGCHC	4 cut(s)	222, 697, 1215, 2172
SfaNI	GCATC	5 cut(s)	804, 1081, 1241, 1373, 2186
SfcI	CTRYAG	2 cut(s)	75, 1710
SfuI	TTCGAA	2 cut(s)	257, 341
SinI	GGWCC	1 cut(s)	577
SmiMI	CAYNNNNRTG	1 cut(s)	2182
SmlI	CTYRAG	4 cut(s)	377, 767, 1264, 1367
SmoI	CTYRAG	4 cut(s)	377, 767, 1264, 1367
SnaBI	TACGTA	1 cut(s)	679
SphI	GCATGC	1 cut(s)	886
Sse9I	AATT	7 cut(s)	211, 344, 849, 1202, 1635, 1743, 2152
SseBI	AGGCCT	1 cut(s)	233
SsiI	CCGC	9 cut(s)	69, 111, 114, 361, 368, 550, 1015, 1406, 1977
SspI	AATATT	1 cut(s)	788
SspMI	CTAG	9 cut(s)	245, 425, 567, 1122, 1674, 1911, 1959, 1989, 2040
StuI	AGGCCT	1 cut(s)	233
StyD4I	CCNGG	4 cut(s)	730, 1589, 1612, 1825
TaaI	ACNGT	9 cut(s)	161, 652, 758, 1042, 1210, 1357, 1414, 1488, 1835
TaiI	ACGT	5 cut(s)	681, 717, 1090, 1260, 1303
TaqI	TCGA	5 cut(s)	8, 257, 341, 445, 938
TasI	AATT	7 cut(s)	211, 344, 849, 1202, 1635, 1743, 2152
TauI	GCSGC	4 cut(s)	71, 114, 364, 1980
TfiI	GAWTC	3 cut(s)	499, 629, 1478
Tru1I	TTAA	6 cut(s)	510, 624, 1115, 1182, 1742, 2031
Tru9I	TTAA	6 cut(s)	510, 624, 1115, 1182, 1742, 2031
TseFI	GTSAC	2 cut(s)	1681, 1886
TseI	GCWGC	8 cut(s)	65, 762, 1544, 1547, 1712, 1715, 2043, 2046
Tsp45I	GTSAC	2 cut(s)	1681, 1886
TspDTI	ATGAA	7 cut(s)	546, 663, 816, 1113, 1460, 1737, 1767
TspGWI	ACGGA	1 cut(s)	1572
VpaK11BI	GGWCC	1 cut(s)	577
XapI	RAATTY	1 cut(s)	1202
XceI	RCATGY	2 cut(s)	886, 1448
XmnI	GAANNNNTTC	2 cut(s)	849, 1758
XspI	CTAG	9 cut(s)	245, 425, 567, 1122, 1674, 1911, 1959, 1989, 2040

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.