Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0008791

Physical Location & Seq

Genomic Coordinates Reverse (-)

41750670 .. 41756222

Gene Structure 5553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00420530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2286 bp

ATGGCGTCGATTATCGGAGTTTCCTCTATATACTACCAGACTCCATGTGAGTTGTATAAAAGAGCTGCCGCGCCTGTAGCTACCACGACGGCCCCGACGACGAGCAGTAGCGGCGTTTCGTTGGCTTTTCCGGAGAGGCAGAGGGCGCACTTCAACAGTGTTTTGAGAGCGAGGAGTGTTTTCGCTACTCAGGCGATTGCGACGCCCAATTCTGTGCTCAGTGAAGAGGCCTTCAAGGGGCTAGGGGACTTTTCGAAGGGAGAGCTGGACTCGGAGTCGGAGTATGAGTCGGAGAGTGATGTGGTTGAGCCGGTTAGTAAAGACGAGCTGGCTCTTTCGAAATTGGGCCTGCCTCAGCGGCTTGTGGATAGTCTTGAGAGGCGTGGCATTTCTTCGCTTTTTCCCATTCAGAGAGCTGTGCTAGTGCCGGCACTGGAAGGTCGAGACATCATAGCTCGTGCAAAGACTGGGACTGGGAAGACATTGGCCTTTGGGATTCCCATACTTAAACGCCTTACAGAAGATGATGAACAGAGAGGTTCAAGGCGGTCTGGTTATCTTCCTAGAGTTCTGGTCCTTGCACCTACTCGGGAGTTAGCGAAGCAAGTGGACAAGGAGATTAAAGAATCTGCACCTTATCTGAACACTGTTTGCGTCTATGGAGGAGTTTCATACGTAACGCAACAGAGTGCTCTTTCTCGTGGGGTTGACGTAGTGGTTGGAACTCCTGGTCGGCTTATTGACCTGATAAACGGCGGCAGCCTCAAGTTGGGTGAAGTTCAATTTTTGGTACTTGATGAAGCTGATCAGATGCTTGCTGTTGGATTTGAGGAAGATGTGGAAACAATTCTACAAAGGCTCCCAGCTCAGAGGCAGAGCATGCTTTTTTCTGCAACTATGCCCACTTGGGTGAAAAAACTAGCACGAAAATATTTGGACAATCCATTGACGATTGATTTGGTTGGTGATCAAGATGAGAAGCTTGCAGAAGGGATCAAACTCTATGCTCTATCAACCACAAACTCTTCAAAGCGGACTATTCTTAGTGATCTTATCACAGTTTATGCAAAGGGTGGGAAGACCATTGTTTTTACACAAACGAAACGTGATGCTGATGAAGTGTCAATGTCATTAACGACTAGCATAGCTTCTGAGGCATTGCATGGAGATATATCACAGCATCAAAGGGAGAGAACCCTTAATGGTTTTCGGCAAGGAAAATTCACCGTGCTCGTTGCCACTGATGTTGCATCCCGTGGACTTGATATTCCCAACGTTGACTTGGTTATCCACTATGAACTTCCCAATGATTCAGAGACATTTGTACATCGCTCTGGTCGTACTGGACGTGCAGGGAAACTCGGTAATGCCGTTCTGATGTTTACTAATAACCAGAGGAGAACAGTCAAAACTCTTGAGCGTGATGTGGGGTGCAGGTTTGAGTTTGTTACTCCGCCAACCGTTGAGGAGGTTTTGGAGTCATCTGCTTCACATGTGGTTGCTACTCTCAATGGGGTTCATCCTGAATCCATACAGTTTTTTACACCGACGGCACAGAGACTGATTGAAGAACAGGGAACAACTGCTCTTGCTGCTGCGCTGGCACAGCTAAGTGGATTTTCCCGACCTCCGTCATCCCGGTCTCTAATCAGTCATGAGCCGGGGTGGACGACATTGCAAATAATTCGGGATCCAGCTTTTGCCAGAGGTTACCTGTCTGCTAGATCTGTCACTGGGTTTCTTTCAGATGTTTATTCTGCAGCTGCTGATGAACTTGGAAAAATATATTTAATTGCAGATGAAAGGGTTCAAGGAGCAGTTTTTGATCTTCCAGAGGAGATTGCAAAAGAGTTGCTGAAGAGGCAAATACCTCCTGGAAACAGTATTTCCAAGATCAGCAAGTTGCCTCCTCTGCAAGATGACGGGCCTGTGAGTGACAACTATGGCAGGTTTTCAGCTAGGGATCGGAGTAGTCGACGGGGAAGTTTTAGTAGTGGACGGGGAGGTAGTGGTGGACGGGGAGGTTTTAGAAGTAGCTCTAGGGGTGGATGGGGAGGCGGCCGAGGTTCTAGTGATGGTGATGATGATTTTAGGAGTAGCAGAGGAAGTTTTAATAGATCTAGCAGCAGCCGACCTCGGGTGACAAGAAGTATGGATGATGATTGGCTTATTGGAGGTACACGAACAGGCAGAATACCACCACGAGACAGCTTTGGAGGTTCCTGTTTCAATTGTGGGCAGTCTGGGCACAGGGCATCAGAGTGTCCTCAGAAACAAGGATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010467 GO:0010501 GO:0016020 GO:0016043 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0034641 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

DEAD GUCT Helicase_C zf-CCHC

Protein Analysis

761

Amino Acids

82.56

Weight (kDa)

8.53

Isoelectric Point (pI)

44.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	135 - 306	2.1e-45	DEAD/DEAH box helicase
ResIII	PF04851	148 - 300	6.4e-06	Type III restriction enzyme, res subunit
Helicase_C	PF00271	344 - 452	8e-32	Helicase conserved C-terminal domain
DD_DDX21-DDX50	PF26142	487 - 536	1.1e-16	DDX21/DDX50 dimerisation domain
GUCT	PF08152	539 - 639	1.9e-14	GUCT (NUC152) domain
zf-CCHC	PF00098	741 - 757	1.2e-06	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0008791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26742 AT5G26742 AT5G26742
fragaria_vesca	FvH4_6g08810 FvH4_6g08810 FvH4_6g08810 FvH4_6g08810
malus_domestica	MD04G1183400.v1.1 MD12G1196800.v1.1
prunus_persica	Prupe.6G301900_v2.0.a1
pyrus_communis	pycom04g16190 pycom12g18300
rosa_chinensis	RchiOBHm_Chr3g0459081
rosa_laevigata	RLG00000025121
rosa_multiflora	Rmu_sc0000466.1_g000002 Rmu_sc0003515.1_g000001
rosa_roxburghii	Rroxscaffold_6G00420530
rosa_rugosa	Rorug03G0033400
rosa_samantha	Rh3AG091300 Rh3BG094400 Rh3CG094800 Rh3DG094800
rosa_wichuraiana	Rw3G007840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1425, 1938
AccI	GTMKAC	1 cut(s)	1975
AccII	CGCG	1 cut(s)	71
AccIII	TCCGGA	1 cut(s)	130
AciI	CCGC	8 cut(s)	69, 111, 358, 547, 756, 1033, 1454, 2058
AclI	AACGTT	1 cut(s)	1275
AclWI	GGATC	4 cut(s)	1001, 1685, 1698, 1971
AcoI	YGGCCR	1 cut(s)	2059
AcsI	RAATTY	1 cut(s)	1220
AcuI	CTGAAG	1 cut(s)	1877
AcyI	GRCGYC	2 cut(s)	5, 203
AfaI	GTAC	4 cut(s)	792, 1326, 1342, 2179
AfiI	CCNNNNNNNGG	3 cut(s)	237, 769, 2137
AflIII	ACRYGT	1 cut(s)	1492
AgsI	TTSAA	8 cut(s)	154, 235, 543, 782, 1029, 1568, 1811, 2230
AhdI	GACNNNNNGTC	1 cut(s)	274
AjiI	CACGTC	1 cut(s)	1349
AjnI	CCWGG	2 cut(s)	727, 1873
AleI	CACNNNNGTG	1 cut(s)	908
Alw21I	GWGCWC	3 cut(s)	219, 694, 1233
Alw26I	GTCTC	5 cut(s)	438, 1310, 1552, 1647, 2199
AlwI	GGATC	4 cut(s)	1001, 1685, 1698, 1971
AlwNI	CAGNNNCTG	2 cut(s)	1561, 1766
Ama87I	CYCGRG	2 cut(s)	588, 2136
Aor13HI	TCCGGA	1 cut(s)	130
AoxI	GGCC	6 cut(s)	90, 228, 346, 486, 1925, 2059
ApeKI	GCWGC	8 cut(s)	65, 759, 1592, 1595, 1760, 1763, 2124, 2127
ApoI	RAATTY	1 cut(s)	1220
ArsI	GACNNNNNNTTYG	2 cut(s)	940, 972
Asp700I	GAANNNNTTC	2 cut(s)	846, 1806
AspLEI	GCGC	3 cut(s)	73, 148, 1600
AspS9I	GGNCC	4 cut(s)	91, 346, 574, 1925
AsuC2I	CCSGG	2 cut(s)	1639, 1662
AsuHPI	GGTGA	6 cut(s)	785, 922, 977, 1216, 2090, 2152
AsuII	TTCGAA	2 cut(s)	254, 338
AvaI	CYCGRG	2 cut(s)	588, 2136
AvaII	GGWCC	1 cut(s)	574
BaeGI	GKGCMC	1 cut(s)	2250
BamHI	GGATCC	1 cut(s)	1690
BauI	CACGAG	3 cut(s)	456, 699, 2202
BbsI	GAAGAC	2 cut(s)	485, 1085
Bbv12I	GWGCWC	3 cut(s)	219, 694, 1233
BbvCI	CCTCAGC	1 cut(s)	354
BbvI	GCAGC	8 cut(s)	52, 771, 1579, 1582, 1750, 1772, 2136, 2139
BccI	CCATC	2 cut(s)	2043, 2069
BceAI	ACGGC	4 cut(s)	105, 769, 1355, 1566
BcgI	CGANNNNNNTGC	2 cut(s)	1667, 1701
BciT130I	CCWGG	2 cut(s)	729, 1875
BclI	TGATCA	2 cut(s)	805, 967
BcnI	CCSGG	2 cut(s)	1639, 1662
BcoDI	GTCTC	5 cut(s)	438, 1310, 1552, 1647, 2199
BfmI	CTRYAG	2 cut(s)	75, 1758
BfuAI	ACCTGC	2 cut(s)	1425, 1938
BglI	GCCNNNNNGGC	1 cut(s)	358
BglII	AGATCT	2 cut(s)	1724, 2117
Bme1390I	CCNGG	4 cut(s)	729, 1639, 1662, 1875
Bme18I	GGWCC	1 cut(s)	574
BmeRI	GACNNNNNGTC	1 cut(s)	274
BmeT110I	CYCGRG	2 cut(s)	588, 2136
BmgBI	CACGTC	1 cut(s)	1349
BmgT120I	GGNCC	4 cut(s)	91, 346, 574, 1925
BmiI	GGNNCC	4 cut(s)	93, 860, 1692, 2221
BmrFI	CCNGG	4 cut(s)	729, 1639, 1662, 1875
BmrI	ACTGGG	3 cut(s)	477, 483, 1743
BmsI	GCATC	5 cut(s)	801, 1099, 1189, 1259, 2264
BmuI	ACTGGG	3 cut(s)	477, 483, 1743
BoxI	GACNNNNGTC	1 cut(s)	1630
BpiI	GAAGAC	2 cut(s)	485, 1085
BplI	GAGNNNNNCTC	2 cut(s)	254, 286
Bpu10I	CCTNAGC	1 cut(s)	354
Bpu14I	TTCGAA	2 cut(s)	254, 338
BpuEI	CTTGAG	3 cut(s)	395, 749, 1436
BpuMI	CCSGG	2 cut(s)	1639, 1662
BsaAI	YACGTR	1 cut(s)	676
BsaHI	GRCGYC	2 cut(s)	5, 203
BsaI	GGTCTC	1 cut(s)	1647
BsaJI	CCNNGG	4 cut(s)	1255, 1661, 2062, 2135
BsaWI	WCCGGW	1 cut(s)	130
BsaXI	ACNNNNNCTCC	6 cut(s)	266, 272, 296, 302, 843, 873
Bsc4I	CCNNNNNNNGG	3 cut(s)	237, 769, 2137
Bse118I	RCCGGY	2 cut(s)	310, 427
Bse1I	ACTGG	5 cut(s)	438, 472, 478, 1348, 1738
Bse3DI	GCAATG	2 cut(s)	1157, 1673
BseAI	TCCGGA	1 cut(s)	130
BseBI	CCWGG	2 cut(s)	729, 1875
BseDI	CCNNGG	4 cut(s)	1255, 1661, 2062, 2135
BseGI	GGATG	5 cut(s)	1250, 1519, 1634, 2054, 2161
BseLI	CCNNNNNNNGG	3 cut(s)	237, 769, 2137
BseMI	GCAATG	2 cut(s)	1157, 1673
BseMII	CTCAG	6 cut(s)	203, 232, 368, 881, 1143, 2282
BseNI	ACTGG	5 cut(s)	438, 472, 478, 1348, 1738
BseRI	GAGGAG	6 cut(s)	187, 678, 1411, 1481, 1850, 1899
BseSI	GKGCMC	1 cut(s)	2250
BseX3I	CGGCCG	1 cut(s)	2059
BseXI	GCAGC	8 cut(s)	52, 771, 1579, 1582, 1750, 1772, 2136, 2139
BseYI	CCCAGC	1 cut(s)	862
BsgI	GTGCAG	3 cut(s)	615, 1371, 1453
Bsh1236I	CGCG	1 cut(s)	71
Bsh1285I	CGRYCG	1 cut(s)	2062
BshFI	GGCC	6 cut(s)	92, 230, 348, 488, 1927, 2061
BsiEI	CGRYCG	1 cut(s)	2062
BsiHKAI	GWGCWC	3 cut(s)	219, 694, 1233
BsiHKCI	CYCGRG	2 cut(s)	588, 2136
BsiSI	CCGG	5 cut(s)	131, 311, 428, 1639, 1661
BslFI	GGGAC	2 cut(s)	260, 484
BslI	CCNNNNNNNGG	3 cut(s)	237, 769, 2137
BsmAI	GTCTC	5 cut(s)	438, 1310, 1552, 1647, 2199
BsmFI	GGGAC	2 cut(s)	260, 484
BsnI	GGCC	6 cut(s)	92, 230, 348, 488, 1927, 2061
Bso31I	GGTCTC	1 cut(s)	1647
BsoBI	CYCGRG	2 cut(s)	588, 2136
Bsp119I	TTCGAA	2 cut(s)	254, 338
Bsp1286I	GDGCHC	4 cut(s)	219, 694, 1233, 2250
Bsp13I	TCCGGA	1 cut(s)	130
Bsp1407I	TGTACA	1 cut(s)	1324
BspACI	CCGC	8 cut(s)	69, 111, 358, 547, 756, 1033, 1454, 2058
BspANI	GGCC	6 cut(s)	92, 230, 348, 488, 1927, 2061
BspCNI	CTCAG	6 cut(s)	202, 231, 367, 880, 1144, 2281
BspEI	TCCGGA	1 cut(s)	130
BspFNI	CGCG	1 cut(s)	71
BspHI	TCATGA	1 cut(s)	1654
BspLI	GGNNCC	4 cut(s)	93, 860, 1692, 2221
BspMAI	CTGCAG	1 cut(s)	1762
BspMI	ACCTGC	2 cut(s)	1425, 1938
BspPI	GGATC	4 cut(s)	1001, 1685, 1698, 1971
BspT104I	TTCGAA	2 cut(s)	254, 338
BspTNI	GGTCTC	1 cut(s)	1647
BsrDI	GCAATG	2 cut(s)	1157, 1673
BsrFI	RCCGGY	2 cut(s)	310, 427
BsrGI	TGTACA	1 cut(s)	1324
BsrI	ACTGG	5 cut(s)	438, 472, 478, 1348, 1738
BssAI	RCCGGY	2 cut(s)	310, 427
BssECI	CCNNGG	4 cut(s)	1255, 1661, 2062, 2135
BssNI	GRCGYC	2 cut(s)	5, 203
BssSI	CACGAG	3 cut(s)	456, 699, 2202
Bst2BI	CACGAG	3 cut(s)	456, 699, 2202
Bst2UI	CCWGG	2 cut(s)	729, 1875
Bst4CI	ACNGT	8 cut(s)	158, 649, 1060, 1228, 1405, 1462, 1536, 1883
Bst6I	CTCTTC	3 cut(s)	219, 1030, 1853
BstACI	GRCGYC	2 cut(s)	5, 203
BstAPI	GCANNNNNTGC	1 cut(s)	880
BstAUI	TGTACA	1 cut(s)	1324
BstBAI	YACGTR	1 cut(s)	676
BstBI	TTCGAA	2 cut(s)	254, 338
BstC8I	GCNNGC	7 cut(s)	330, 350, 429, 816, 881, 984, 1602
BstDEI	CTNAG	8 cut(s)	189, 218, 354, 867, 1043, 1152, 1610, 2268
BstDSI	CCRYGG	1 cut(s)	1255
BstEII	GGTNACC	1 cut(s)	1709
BstF5I	GGATG	5 cut(s)	1250, 1519, 1634, 2054, 2161
BstFNI	CGCG	1 cut(s)	71
BstHHI	GCGC	3 cut(s)	73, 148, 1600
BstMAI	GTCTC	5 cut(s)	438, 1310, 1552, 1647, 2199
BstMCI	CGRYCG	1 cut(s)	2062
BstNI	CCWGG	2 cut(s)	729, 1875
BstNSI	RCATGY	2 cut(s)	883, 1496
BstPAI	GACNNNNGTC	1 cut(s)	1630
BstPI	GGTNACC	1 cut(s)	1709
BstSCI	CCNGG	4 cut(s)	727, 1637, 1660, 1873
BstSFI	CTRYAG	2 cut(s)	75, 1758
BstSLI	GKGCMC	1 cut(s)	2250
BstSNI	TACGTA	1 cut(s)	676
BstUI	CGCG	1 cut(s)	71
BstV1I	GCAGC	8 cut(s)	52, 771, 1579, 1582, 1750, 1772, 2136, 2139
BstV2I	GAAGAC	2 cut(s)	485, 1085
BstX2I	RGATCY	3 cut(s)	1690, 1724, 2117
BstYI	RGATCY	3 cut(s)	1690, 1724, 2117
BstZI	CGGCCG	1 cut(s)	2059
BsuRI	GGCC	6 cut(s)	92, 230, 348, 488, 1927, 2061
BtgI	CCRYGG	1 cut(s)	1255
BtgZI	GCGATG	1 cut(s)	1313
BtrI	CACGTC	1 cut(s)	1349
BtsCI	GGATG	5 cut(s)	1250, 1519, 1634, 2054, 2161
BtsIMutI	CAGTG	6 cut(s)	163, 226, 431, 645, 1239, 1731
BveI	ACCTGC	2 cut(s)	1425, 1938
Cac8I	GCNNGC	7 cut(s)	330, 350, 429, 816, 881, 984, 1602
CaiI	CAGNNNCTG	2 cut(s)	1561, 1766
CciI	TCATGA	1 cut(s)	1654
CfoI	GCGC	3 cut(s)	73, 148, 1600
Cfr10I	RCCGGY	2 cut(s)	310, 427
Cfr13I	GGNCC	4 cut(s)	91, 346, 574, 1925
CseI	GACGC	2 cut(s)	211, 643
Csp6I	GTAC	4 cut(s)	791, 1325, 1341, 2178
CspCI	CAANNNNNGTGG	2 cut(s)	1228, 1263
CviAII	CATG	5 cut(s)	45, 880, 1163, 1493, 1655
CviQI	GTAC	4 cut(s)	791, 1325, 1341, 2178
DdeI	CTNAG	8 cut(s)	189, 218, 354, 867, 1043, 1152, 1610, 2268
DriI	GACNNNNNGTC	1 cut(s)	274
EaeI	YGGCCR	1 cut(s)	2059
EagI	CGGCCG	1 cut(s)	2059
Eam1104I	CTCTTC	3 cut(s)	219, 1030, 1853
Eam1105I	GACNNNNNGTC	1 cut(s)	274
EarI	CTCTTC	3 cut(s)	219, 1030, 1853
EciI	GGCGGA	1 cut(s)	1443
EclXI	CGGCCG	1 cut(s)	2059
Eco105I	TACGTA	1 cut(s)	676
Eco147I	AGGCCT	1 cut(s)	230
Eco31I	GGTCTC	1 cut(s)	1647
Eco47I	GGWCC	1 cut(s)	574
Eco52I	CGGCCG	1 cut(s)	2059
Eco57I	CTGAAG	1 cut(s)	1877
Eco88I	CYCGRG	2 cut(s)	588, 2136
Eco91I	GGTNACC	1 cut(s)	1709
EcoO65I	GGTNACC	1 cut(s)	1709
EcoRII	CCWGG	2 cut(s)	727, 1873
FaeI	CATG	5 cut(s)	48, 883, 1166, 1496, 1658
FaqI	GGGAC	2 cut(s)	260, 484
FatI	CATG	5 cut(s)	44, 879, 1162, 1492, 1654
FbaI	TGATCA	2 cut(s)	805, 967
FblI	GTMKAC	1 cut(s)	1975
FokI	GGATG	5 cut(s)	1237, 1506, 1621, 2061, 2168
GlaI	GCGC	3 cut(s)	72, 147, 1599
GsaI	CCCAGC	1 cut(s)	866
HaeIII	GGCC	6 cut(s)	92, 230, 348, 488, 1927, 2061
HapII	CCGG	5 cut(s)	131, 311, 428, 1639, 1661
HgaI	GACGC	2 cut(s)	211, 643
HhaI	GCGC	3 cut(s)	73, 148, 1600
Hin1I	GRCGYC	2 cut(s)	5, 203
Hin1II	CATG	5 cut(s)	48, 883, 1166, 1496, 1658
Hin6I	GCGC	3 cut(s)	71, 146, 1598
HinP1I	GCGC	3 cut(s)	71, 146, 1598
HincII	GTYRAC	3 cut(s)	709, 1279, 1976
HindII	GTYRAC	3 cut(s)	709, 1279, 1976
HindIII	AAGCTT	1 cut(s)	980
HinfI	GANTC	9 cut(s)	40, 269, 275, 287, 496, 626, 1310, 1478, 1526
HpaII	CCGG	5 cut(s)	131, 311, 428, 1639, 1661
HphI	GGTGA	6 cut(s)	785, 922, 977, 1216, 2090, 2152
Hpy99I	CGWCG	7 cut(s)	10, 91, 100, 103, 205, 1552, 1980
HpyAV	CCTTC	4 cut(s)	241, 250, 431, 983
HpyCH4III	ACNGT	8 cut(s)	158, 649, 1060, 1228, 1405, 1462, 1536, 1883
HpyCH4IV	ACGT	5 cut(s)	675, 711, 1105, 1275, 1348
HpyF3I	CTNAG	8 cut(s)	189, 218, 354, 867, 1043, 1152, 1610, 2268
HpySE526I	ACGT	5 cut(s)	675, 711, 1105, 1275, 1348
Hsp92I	GRCGYC	2 cut(s)	5, 203
Hsp92II	CATG	5 cut(s)	48, 883, 1166, 1496, 1658
HspAI	GCGC	3 cut(s)	71, 146, 1598
Kpn2I	TCCGGA	1 cut(s)	130
KroI	GCCGGC	1 cut(s)	427
KroNI	GCCGGC	1 cut(s)	429
Ksp22I	TGATCA	2 cut(s)	805, 967
LmnI	GCTCC	2 cut(s)	864, 1814
Lsp1109I	GCAGC	8 cut(s)	52, 771, 1579, 1582, 1750, 1772, 2136, 2139
LweI	GCATC	5 cut(s)	801, 1099, 1189, 1259, 2264
MaeII	ACGT	5 cut(s)	675, 711, 1105, 1275, 1348
MaeIII	GTNAC	6 cut(s)	676, 1447, 1709, 1729, 1934, 2140
MfeI	CAATTG	1 cut(s)	2230
MflI	RGATCY	3 cut(s)	1690, 1724, 2117
MhlI	GDGCHC	4 cut(s)	219, 694, 1233, 2250
MluCI	AATT	8 cut(s)	208, 341, 782, 846, 1220, 1683, 1791, 2230
MlyI	GAGTC	5 cut(s)	34, 263, 284, 296, 1487
MmeI	TCCRAC	4 cut(s)	258, 270, 700, 802
MroI	TCCGGA	1 cut(s)	130
MroNI	GCCGGC	1 cut(s)	427
MroXI	GAANNNNTTC	2 cut(s)	846, 1806
MseI	TTAA	6 cut(s)	507, 621, 1133, 1200, 1790, 2112
MslI	CAYNNNNRTG	2 cut(s)	908, 2260
MspA1I	CMGCKG	2 cut(s)	358, 1763
MspI	CCGG	5 cut(s)	131, 311, 428, 1639, 1661
MspR9I	CCNGG	4 cut(s)	729, 1639, 1662, 1875
MunI	CAATTG	1 cut(s)	2230
MvaI	CCWGG	2 cut(s)	729, 1875
MvnI	CGCG	1 cut(s)	71
NaeI	GCCGGC	1 cut(s)	429
NciI	CCSGG	2 cut(s)	1639, 1662
NgoMIV	GCCGGC	1 cut(s)	427
NlaIII	CATG	5 cut(s)	48, 883, 1166, 1496, 1658
NlaIV	GGNNCC	4 cut(s)	93, 860, 1692, 2221
NmeAIII	GCCGAG	1 cut(s)	2087
NmuCI	GTSAC	3 cut(s)	1729, 1934, 2140
NspI	RCATGY	2 cut(s)	883, 1496
NspV	TTCGAA	2 cut(s)	254, 338
OliI	CACNNNNGTG	1 cut(s)	908
PaeI	GCATGC	1 cut(s)	883
PagI	TCATGA	1 cut(s)	1654
PceI	AGGCCT	1 cut(s)	230
PciI	ACATGT	1 cut(s)	1492
PcsI	WCGNNNNNNNCGW	6 cut(s)	92, 95, 1336, 1345, 1368, 1972
PdiI	GCCGGC	1 cut(s)	429
PdmI	GAANNNNTTC	2 cut(s)	846, 1806
PfeI	GAWTC	4 cut(s)	496, 626, 1310, 1526
PfoI	TCCNGGA	1 cut(s)	1873
PleI	GAGTC	5 cut(s)	34, 263, 283, 295, 1486
PpsI	GAGTC	5 cut(s)	34, 263, 283, 295, 1486
Ppu21I	YACGTR	1 cut(s)	676
PscI	ACATGT	1 cut(s)	1492
PshAI	GACNNNNGTC	1 cut(s)	1630
Psp1406I	AACGTT	1 cut(s)	1275
Psp6I	CCWGG	2 cut(s)	727, 1873
PspEI	GGTNACC	1 cut(s)	1709
PspFI	CCCAGC	1 cut(s)	862
PspGI	CCWGG	2 cut(s)	727, 1873
PspN4I	GGNNCC	4 cut(s)	93, 860, 1692, 2221
PspPI	GGNCC	4 cut(s)	91, 346, 574, 1925
PstI	CTGCAG	1 cut(s)	1762
PstNI	CAGNNNCTG	2 cut(s)	1561, 1766
PsuI	RGATCY	3 cut(s)	1690, 1724, 2117
PvuII	CAGCTG	1 cut(s)	1763
RsaI	GTAC	4 cut(s)	792, 1326, 1342, 2179
RsaNI	GTAC	4 cut(s)	791, 1325, 1341, 2178
RseI	CAYNNNNRTG	2 cut(s)	908, 2260
SalI	GTCGAC	1 cut(s)	1974
SaqAI	TTAA	6 cut(s)	507, 621, 1133, 1200, 1790, 2112
Sau96I	GGNCC	4 cut(s)	91, 346, 574, 1925
SchI	GAGTC	5 cut(s)	34, 263, 284, 296, 1487
ScrFI	CCNGG	4 cut(s)	729, 1639, 1662, 1875
SduI	GDGCHC	4 cut(s)	219, 694, 1233, 2250
SfaNI	GCATC	5 cut(s)	801, 1099, 1189, 1259, 2264
SfcI	CTRYAG	2 cut(s)	75, 1758
SfuI	TTCGAA	2 cut(s)	254, 338
SinI	GGWCC	1 cut(s)	574
SmiMI	CAYNNNNRTG	2 cut(s)	908, 2260
SmlI	CTYRAG	3 cut(s)	374, 764, 1415
SmoI	CTYRAG	3 cut(s)	374, 764, 1415
SnaBI	TACGTA	1 cut(s)	676
SphI	GCATGC	1 cut(s)	883
Sse9I	AATT	8 cut(s)	208, 341, 782, 846, 1220, 1683, 1791, 2230
SseBI	AGGCCT	1 cut(s)	230
SsiI	CCGC	8 cut(s)	69, 111, 358, 547, 756, 1033, 1454, 2058
SspI	AATATT	1 cut(s)	932
StuI	AGGCCT	1 cut(s)	230
StyD4I	CCNGG	4 cut(s)	727, 1637, 1660, 1873
TaaI	ACNGT	8 cut(s)	158, 649, 1060, 1228, 1405, 1462, 1536, 1883
TaiI	ACGT	5 cut(s)	678, 714, 1108, 1278, 1351
TaqI	TCGA	5 cut(s)	8, 254, 338, 442, 1975
TasI	AATT	8 cut(s)	208, 341, 782, 846, 1220, 1683, 1791, 2230
TatI	WGTACW	1 cut(s)	1324
TauI	GCSGC	5 cut(s)	71, 114, 361, 759, 2061
TfiI	GAWTC	4 cut(s)	496, 626, 1310, 1526
Tru1I	TTAA	6 cut(s)	507, 621, 1133, 1200, 1790, 2112
Tru9I	TTAA	6 cut(s)	507, 621, 1133, 1200, 1790, 2112
TscAI	CASTG	6 cut(s)	163, 226, 438, 652, 1246, 1738
TseFI	GTSAC	3 cut(s)	1729, 1934, 2140
TseI	GCWGC	8 cut(s)	65, 759, 1592, 1595, 1760, 1763, 2124, 2127
Tsp45I	GTSAC	3 cut(s)	1729, 1934, 2140
TspDTI	ATGAA	8 cut(s)	543, 660, 813, 1131, 1311, 1508, 1785, 1815
TspGWI	ACGGA	1 cut(s)	1620
TspRI	CASTG	6 cut(s)	163, 226, 438, 652, 1246, 1738
VpaK11BI	GGWCC	1 cut(s)	574
XapI	RAATTY	1 cut(s)	1220
XceI	RCATGY	2 cut(s)	883, 1496
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1279
XmiI	GTMKAC	1 cut(s)	1975
XmnI	GAANNNNTTC	2 cut(s)	846, 1806

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.