DEAD-box ATP-dependent RNA helicase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G26742 AT5G26742 AT5G26742 |
| fragaria_vesca | FvH4_6g08810 FvH4_6g08810 FvH4_6g08810 FvH4_6g08810 |
| malus_domestica | MD04G1183400.v1.1 MD12G1196800.v1.1 |
| prunus_persica | Prupe.6G301900_v2.0.a1 |
| pyrus_communis | pycom04g16190 pycom12g18300 |
| rosa_chinensis | RchiOBHm_Chr3g0459081 |
| rosa_laevigata | RLG00000025121 |
| rosa_multiflora | Rmu_sc0000466.1_g000002 Rmu_sc0003515.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00420530 |
| rosa_rugosa | Rorug03G0033400 |
| rosa_samantha | Rh3AG091300 Rh3BG094400 Rh3CG094800 Rh3DG094800 |
| rosa_wichuraiana | Rw3G007840 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 18 |
| AciI | CCGC | 1 cut(s) | 63 |
| AcsI | RAATTY | 1 cut(s) | 95 |
| AcuI | CTGAAG | 2 cut(s) | 218, 246 |
| AfaI | GTAC | 1 cut(s) | 440 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 472 |
| AgeI | ACCGGT | 1 cut(s) | 411 |
| AgsI | TTSAA | 3 cut(s) | 135, 279, 383 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 379, 411 |
| AluBI | AGCT | 2 cut(s) | 259, 266 |
| AluI | AGCT | 2 cut(s) | 259, 266 |
| Alw26I | GTCTC | 3 cut(s) | 85, 355, 402 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 224 |
| AoxI | GGCC | 1 cut(s) | 323 |
| ApoI | RAATTY | 1 cut(s) | 95 |
| AseI | ATTAAT | 1 cut(s) | 428 |
| AsiGI | ACCGGT | 1 cut(s) | 411 |
| AspS9I | GGNCC | 1 cut(s) | 324 |
| AsuHPI | GGTGA | 3 cut(s) | 166, 206, 250 |
| BccI | CCATC | 1 cut(s) | 493 |
| BcoDI | GTCTC | 3 cut(s) | 85, 355, 402 |
| BlpI | GCTNAGC | 1 cut(s) | 102 |
| BmgT120I | GGNCC | 1 cut(s) | 324 |
| BmsI | GCATC | 1 cut(s) | 349 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 102 |
| Bsa29I | ATCGAT | 1 cut(s) | 168 |
| BsaI | GGTCTC | 1 cut(s) | 402 |
| BsaJI | CCNNGG | 1 cut(s) | 447 |
| BsaWI | WCCGGW | 1 cut(s) | 411 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 472 |
| Bse118I | RCCGGY | 1 cut(s) | 411 |
| BseCI | ATCGAT | 1 cut(s) | 168 |
| BseDI | CCNNGG | 1 cut(s) | 447 |
| BseGI | GGATG | 2 cut(s) | 340, 481 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 472 |
| BseMII | CTCAG | 3 cut(s) | 116, 251, 267 |
| BshFI | GGCC | 1 cut(s) | 325 |
| BshTI | ACCGGT | 1 cut(s) | 411 |
| BshVI | ATCGAT | 1 cut(s) | 168 |
| BsiSI | CCGG | 1 cut(s) | 412 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 472 |
| BsmAI | GTCTC | 3 cut(s) | 85, 355, 402 |
| BsmBI | CGTCTC | 1 cut(s) | 85 |
| BsnI | GGCC | 1 cut(s) | 325 |
| Bso31I | GGTCTC | 1 cut(s) | 402 |
| Bsp143I | GATC | 2 cut(s) | 165, 187 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 102 |
| BspACI | CCGC | 1 cut(s) | 63 |
| BspANI | GGCC | 1 cut(s) | 325 |
| BspCNI | CTCAG | 3 cut(s) | 115, 252, 266 |
| BspDI | ATCGAT | 1 cut(s) | 168 |
| BspTNI | GGTCTC | 1 cut(s) | 402 |
| BsrFI | RCCGGY | 1 cut(s) | 411 |
| BssAI | RCCGGY | 1 cut(s) | 411 |
| BssECI | CCNNGG | 1 cut(s) | 447 |
| BssMI | GATC | 2 cut(s) | 165, 187 |
| BssT1I | CCWWGG | 1 cut(s) | 447 |
| Bst4CI | ACNGT | 1 cut(s) | 518 |
| BstC8I | GCNNGC | 1 cut(s) | 338 |
| BstDEI | CTNAG | 3 cut(s) | 102, 253, 260 |
| BstF5I | GGATG | 2 cut(s) | 340, 481 |
| BstKTI | GATC | 2 cut(s) | 168, 190 |
| BstMAI | GTCTC | 3 cut(s) | 85, 355, 402 |
| BstMBI | GATC | 2 cut(s) | 165, 187 |
| Bsu15I | ATCGAT | 1 cut(s) | 168 |
| BsuRI | GGCC | 1 cut(s) | 325 |
| BsuTUI | ATCGAT | 1 cut(s) | 168 |
| BtgZI | GCGATG | 1 cut(s) | 27 |
| BtsCI | GGATG | 2 cut(s) | 340, 481 |
| BtsI | GCAGTG | 1 cut(s) | 67 |
| BtsIMutI | CAGTG | 3 cut(s) | 67, 222, 523 |
| Cac8I | GCNNGC | 1 cut(s) | 338 |
| CaiI | CAGNNNCTG | 1 cut(s) | 224 |
| Cfr10I | RCCGGY | 1 cut(s) | 411 |
| Cfr13I | GGNCC | 1 cut(s) | 324 |
| ClaI | ATCGAT | 1 cut(s) | 168 |
| CseI | GACGC | 1 cut(s) | 67 |
| Csp6I | GTAC | 1 cut(s) | 439 |
| CspAI | ACCGGT | 1 cut(s) | 411 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 56, 91 |
| CviAII | CATG | 1 cut(s) | 85 |
| CviJI | RGCY | 4 cut(s) | 259, 266, 325, 375 |
| CviKI_1 | RGCY | 4 cut(s) | 259, 266, 325, 375 |
| CviQI | GTAC | 1 cut(s) | 439 |
| DdeI | CTNAG | 3 cut(s) | 102, 253, 260 |
| DpnI | GATC | 2 cut(s) | 167, 189 |
| DpnII | GATC | 2 cut(s) | 165, 187 |
| EciI | GGCGGA | 1 cut(s) | 52 |
| Eco130I | CCWWGG | 1 cut(s) | 447 |
| Eco31I | GGTCTC | 1 cut(s) | 402 |
| Eco32I | GATATC | 1 cut(s) | 291 |
| Eco57I | CTGAAG | 2 cut(s) | 218, 246 |
| EcoRV | GATATC | 1 cut(s) | 291 |
| EcoT14I | CCWWGG | 1 cut(s) | 447 |
| ErhI | CCWWGG | 1 cut(s) | 447 |
| Esp3I | CGTCTC | 1 cut(s) | 85 |
| FaeI | CATG | 1 cut(s) | 88 |
| FatI | CATG | 1 cut(s) | 84 |
| FokI | GGATG | 2 cut(s) | 327, 488 |
| HaeIII | GGCC | 1 cut(s) | 325 |
| HapII | CCGG | 1 cut(s) | 412 |
| HgaI | GACGC | 1 cut(s) | 67 |
| Hin1II | CATG | 1 cut(s) | 88 |
| HinfI | GANTC | 6 cut(s) | 176, 211, 365, 482, 521, 539 |
| HpaII | CCGG | 1 cut(s) | 412 |
| HphI | GGTGA | 3 cut(s) | 166, 206, 250 |
| Hpy188I | TCNGA | 4 cut(s) | 198, 256, 405, 544 |
| HpyAV | CCTTC | 1 cut(s) | 221 |
| HpyCH4III | ACNGT | 1 cut(s) | 518 |
| HpyCH4V | TGCA | 5 cut(s) | 88, 300, 308, 314, 336 |
| HpyF3I | CTNAG | 3 cut(s) | 102, 253, 260 |
| Hsp92II | CATG | 1 cut(s) | 88 |
| Kzo9I | GATC | 2 cut(s) | 165, 187 |
| LpnPI | CCDG | 3 cut(s) | 13, 231, 425 |
| LweI | GCATC | 1 cut(s) | 349 |
| MalI | GATC | 2 cut(s) | 167, 189 |
| MboI | GATC | 2 cut(s) | 165, 187 |
| MboII | GAAGA | 5 cut(s) | 211, 214, 217, 220, 491 |
| MluCI | AATT | 7 cut(s) | 19, 95, 135, 279, 315, 429, 489 |
| MlyI | GAGTC | 1 cut(s) | 185 |
| MnlI | CCTC | 4 cut(s) | 68, 229, 355, 466 |
| MseI | TTAA | 3 cut(s) | 318, 428, 492 |
| MslI | CAYNNNNRTG | 1 cut(s) | 531 |
| MspI | CCGG | 1 cut(s) | 412 |
| NdeII | GATC | 2 cut(s) | 165, 187 |
| NlaIII | CATG | 1 cut(s) | 88 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 105 |
| PfeI | GAWTC | 5 cut(s) | 211, 365, 482, 521, 539 |
| PinAI | ACCGGT | 1 cut(s) | 411 |
| PleI | GAGTC | 1 cut(s) | 184 |
| PpsI | GAGTC | 1 cut(s) | 184 |
| PshBI | ATTAAT | 1 cut(s) | 428 |
| PsiI | TTATAA | 1 cut(s) | 18 |
| PspPI | GGNCC | 1 cut(s) | 324 |
| PstNI | CAGNNNCTG | 1 cut(s) | 224 |
| RsaI | GTAC | 1 cut(s) | 440 |
| RsaNI | GTAC | 1 cut(s) | 439 |
| RseI | CAYNNNNRTG | 1 cut(s) | 531 |
| SaqAI | TTAA | 3 cut(s) | 318, 428, 492 |
| Sau3AI | GATC | 2 cut(s) | 165, 187 |
| Sau96I | GGNCC | 1 cut(s) | 324 |
| SchI | GAGTC | 1 cut(s) | 185 |
| SetI | ASST | 5 cut(s) | 163, 232, 240, 261, 268 |
| SfaNI | GCATC | 1 cut(s) | 349 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 531 |
| Sse9I | AATT | 7 cut(s) | 19, 95, 135, 279, 315, 429, 489 |
| SsiI | CCGC | 1 cut(s) | 63 |
| StyI | CCWWGG | 1 cut(s) | 447 |
| TaaI | ACNGT | 1 cut(s) | 518 |
| TaqI | TCGA | 1 cut(s) | 168 |
| TasI | AATT | 7 cut(s) | 19, 95, 135, 279, 315, 429, 489 |
| TatI | WGTACW | 1 cut(s) | 438 |
| TfiI | GAWTC | 5 cut(s) | 211, 365, 482, 521, 539 |
| Tru1I | TTAA | 3 cut(s) | 318, 428, 492 |
| Tru9I | TTAA | 3 cut(s) | 318, 428, 492 |
| TscAI | CASTG | 3 cut(s) | 74, 229, 523 |
| TspDTI | ATGAA | 3 cut(s) | 30, 492, 552 |
| TspRI | CASTG | 3 cut(s) | 74, 229, 523 |
| VspI | ATTAAT | 1 cut(s) | 428 |
| XapI | RAATTY | 1 cut(s) | 95 |