Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0008791

Physical Location & Seq

Genomic Coordinates Forward (+)

7494912 .. 7500305

Gene Structure 5394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG094800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1839 bp

ATGGCGTCGATTATCGGAGTTTCCTCTATATACTACCAGACTCCATGTGAGTTGTATAAAAGAGCTGCCGCGCCTGTAGCTACCACGACGGCCCCGACGACGAGCAGTAGCGGCGGCGGCGGTGTTTCGCTGGCTTTTCCGGAGAGGCAGAGGGCTCACTTCAACAGTGTTTTGAGAGCGAGGAGTGTTTTCGCTACTCAGGCGATTGCGACGCCCAATTCTGTGCTCAGTGAAGAGGCCTTCAAGGGGCTAGGTGACTTTTCGAAGGGGGAGCTGGACTCGGAGTCGGAGTATGAGTCGGAGAGTGATGTGGTTGAGCCGGTTAGTAAAGACGAGCTGGCTCTTTCGAAATTGGGCCTGCCTCAGCGGCTTGCGGATAGTCTTGAGAGGCGTGGCATTTCTTCGCTTTTTCCCATTCAGAGAGCTGTGCTAGTGCCGGCACTGGAAGGTCGAGACATCATAGCTCGTGCAAAGACTGGGACTGGGAAGACATTGGCCTTTGGGATTCCCATACTTAAACGCCTTACAGAAGATGATGAACAGAGAGGTTCAAGGCGGTCTGGTTATCTTCCTAGAGTTCTGGTCCTTGCACCTACTCGGGAGTTAGCAAAGCAAGTGGACAAGGAGATTAAAGAATCTGCACCTTATCTGAACACTGTTTGCGTCTATGGAGGAGTTTCATACGTATCGCAACAGAGTGCTCTTTCTCGTGGGGTTGACGTAGTGGTTGGAACTCCTGGTCGGCTTATTGACCTGATAAACGGCGGCAGCCTCAAGTTGGGTGAAGTTCAATATTTGGTACTTGATGAAGCTGATCAGATGCTTGCTGTTGGATTTGAGGAAGATGTGGAAACAATTCTACAAAGGCTCCCAGCTCAGAGGCAGAGCATGCTTTTTTCTGCAACTATGCCCACTTGGGTGAAAAAACTAGCACGAAAATATTTGGACAATCCATTGACGATTGATTTGGTTGGTGATCAAGATGAGAAGCTTGCAGAAGGGATCAAACTCTATGCTCTATCAACCACAAACTCTTCAAAGCGGACTATTCTTAGTGATCTTATAACAGTTTATGCAAAGGGTGGGAAGACCATTGTTTTTACACAAACGAAACGTGATGCTGATGAAGTGTCAATGTCATTAACGACTAGCATAGCTTCTGAGGCATTGCATGGAGATATATCACAGCATCAAAGGGAGAGAACCCTTAATGGTTTTCGGCAAGGAAAATTCACTGTGCTCGTTGCCACTGATGTTGCATCCCGTGGACTTGATATTCCCAACGTTGACTTGGTTATCCACTATGAACTTCCCAATGATTCAGAGACATTTGTACATCGCTCTGGTCGTACTGGACGTGCAGGGAAACTCGGTAATGCCGTTCTGATGTTTACTAATAACCAGAGGAGAACAGTCAAAACTCTTGAGCGTGATGTGGGGTGCAGGTTTGAGTTTGTTACTCCGCCAACCGTTGAGGAGGTTTTGGAGTCATCTGCTTCACATGTGGTTGCTACTCTCAATGGGGTTCATCCTGAATCCATACAGTTTTTTACACCGACGGCACAGAGACTGATTGAAGAACAGGGAACAACTGCTCTTGCTGCTGCGCTGGCACAGCTAAGTGGATTTTCCAGACCTCCGTCATCCCGGTCTCTAATCAGTCATGAACCGGGGTGGACGACATTGCAGATAATTCGGGATCCAGCTTTTGCCAGAGGTTACCTGTCTGCTAGATCTGTCACTGGGTTTCTTTCAGATGTTTATTCTGCAGCTGCTGATGAACTTGGAAAAATATATTTAATTGCGGATGAAAGGGTTTGTTTCTACTATATCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010467 GO:0010501 GO:0016020 GO:0016043 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0034641 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

DEAD GUCT Helicase_C zf-CCHC

Protein Analysis

612

Amino Acids

66.62

Weight (kDa)

6.04

Isoelectric Point (pI)

38.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	138 - 309	8e-46	DEAD/DEAH box helicase
ResIII	PF04851	151 - 303	2.2e-06	Type III restriction enzyme, res subunit
Helicase_C	PF00271	347 - 455	5.7e-32	Helicase conserved C-terminal domain
DD_DDX21-DDX50	PF26142	490 - 539	8e-17	DDX21/DDX50 dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26742 AT5G26742 AT5G26742
fragaria_vesca	FvH4_6g08810 FvH4_6g08810 FvH4_6g08810 FvH4_6g08810
malus_domestica	MD04G1183400.v1.1 MD12G1196800.v1.1
prunus_persica	Prupe.6G301900_v2.0.a1
pyrus_communis	pycom04g16190 pycom12g18300
rosa_chinensis	RchiOBHm_Chr3g0459081
rosa_laevigata	RLG00000025121
rosa_multiflora	Rmu_sc0000466.1_g000002 Rmu_sc0003515.1_g000001
rosa_roxburghii	Rroxscaffold_6G00420530
rosa_rugosa	Rorug03G0033400
rosa_samantha	Rh3AG091300 Rh3BG094400 Rh3CG094800 Rh3DG094800
rosa_wichuraiana	Rw3G007840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1064
Acc36I	ACCTGC	1 cut(s)	1434
AccII	CGCG	1 cut(s)	71
AccIII	TCCGGA	1 cut(s)	139
AclI	AACGTT	1 cut(s)	1284
AclWI	GGATC	3 cut(s)	1010, 1694, 1707
AcsI	RAATTY	1 cut(s)	1229
AcyI	GRCGYC	2 cut(s)	5, 212
AfaI	GTAC	3 cut(s)	801, 1335, 1351
AfiI	CCNNNNNNNGG	2 cut(s)	246, 778
AflIII	ACRYGT	1 cut(s)	1501
AgsI	TTSAA	6 cut(s)	163, 244, 552, 791, 1038, 1577
AhdI	GACNNNNNGTC	1 cut(s)	283
AjiI	CACGTC	1 cut(s)	1358
AjnI	CCWGG	1 cut(s)	736
AleI	CACNNNNGTG	1 cut(s)	917
Alw21I	GWGCWC	3 cut(s)	228, 703, 1242
Alw26I	GTCTC	4 cut(s)	447, 1319, 1561, 1656
AlwI	GGATC	3 cut(s)	1010, 1694, 1707
AlwNI	CAGNNNCTG	2 cut(s)	1570, 1775
Ama87I	CYCGRG	1 cut(s)	597
Aor13HI	TCCGGA	1 cut(s)	139
AoxI	GGCC	4 cut(s)	90, 237, 355, 495
ApeKI	GCWGC	6 cut(s)	65, 768, 1601, 1604, 1769, 1772
ApoI	RAATTY	1 cut(s)	1229
ArsI	GACNNNNNNTTYG	2 cut(s)	949, 981
Asp700I	GAANNNNTTC	1 cut(s)	855
AspLEI	GCGC	2 cut(s)	73, 1609
AspS9I	GGNCC	3 cut(s)	91, 355, 583
AsuC2I	CCSGG	2 cut(s)	1648, 1671
AsuHPI	GGTGA	4 cut(s)	266, 794, 931, 986
AsuII	TTCGAA	2 cut(s)	263, 347
AvaI	CYCGRG	1 cut(s)	597
AvaII	GGWCC	1 cut(s)	583
BamHI	GGATCC	1 cut(s)	1699
BanII	GRGCYC	1 cut(s)	157
BauI	CACGAG	2 cut(s)	465, 708
BbsI	GAAGAC	2 cut(s)	494, 1094
Bbv12I	GWGCWC	3 cut(s)	228, 703, 1242
BbvCI	CCTCAGC	1 cut(s)	363
BbvI	GCAGC	6 cut(s)	52, 780, 1588, 1591, 1759, 1781
BceAI	ACGGC	4 cut(s)	105, 778, 1364, 1575
BcgI	CGANNNNNNTGC	2 cut(s)	1676, 1710
BciT130I	CCWGG	1 cut(s)	738
BclI	TGATCA	2 cut(s)	814, 976
BcnI	CCSGG	2 cut(s)	1648, 1671
BcoDI	GTCTC	4 cut(s)	447, 1319, 1561, 1656
BfaI	CTAG	6 cut(s)	251, 431, 573, 929, 1149, 1731
BfmI	CTRYAG	2 cut(s)	75, 1767
BfuAI	ACCTGC	1 cut(s)	1434
BglI	GCCNNNNNGGC	1 cut(s)	367
BglII	AGATCT	1 cut(s)	1733
Bme1390I	CCNGG	3 cut(s)	738, 1648, 1671
Bme18I	GGWCC	1 cut(s)	583
BmeRI	GACNNNNNGTC	1 cut(s)	283
BmeT110I	CYCGRG	1 cut(s)	597
BmgBI	CACGTC	1 cut(s)	1358
BmgT120I	GGNCC	3 cut(s)	91, 355, 583
BmiI	GGNNCC	3 cut(s)	93, 869, 1701
BmrFI	CCNGG	3 cut(s)	738, 1648, 1671
BmrI	ACTGGG	3 cut(s)	486, 492, 1752
BmsI	GCATC	4 cut(s)	810, 1108, 1198, 1268
BmuI	ACTGGG	3 cut(s)	486, 492, 1752
BoxI	GACNNNNGTC	1 cut(s)	1639
BpiI	GAAGAC	2 cut(s)	494, 1094
BplI	GAGNNNNNCTC	2 cut(s)	263, 295
Bpu10I	CCTNAGC	1 cut(s)	363
Bpu14I	TTCGAA	2 cut(s)	263, 347
BpuEI	CTTGAG	3 cut(s)	404, 758, 1445
BpuMI	CCSGG	2 cut(s)	1648, 1671
BsaAI	YACGTR	1 cut(s)	685
BsaHI	GRCGYC	2 cut(s)	5, 212
BsaI	GGTCTC	1 cut(s)	1656
BsaJI	CCNNGG	2 cut(s)	1264, 1670
BsaWI	WCCGGW	1 cut(s)	139
BsaXI	ACNNNNNCTCC	6 cut(s)	275, 281, 305, 311, 852, 882
Bsc4I	CCNNNNNNNGG	2 cut(s)	246, 778
Bse118I	RCCGGY	2 cut(s)	319, 436
Bse1I	ACTGG	5 cut(s)	447, 481, 487, 1357, 1747
Bse3DI	GCAATG	2 cut(s)	1166, 1682
BseAI	TCCGGA	1 cut(s)	139
BseBI	CCWGG	1 cut(s)	738
BseDI	CCNNGG	2 cut(s)	1264, 1670
BseGI	GGATG	4 cut(s)	1259, 1528, 1643, 1813
BseLI	CCNNNNNNNGG	2 cut(s)	246, 778
BseMI	GCAATG	2 cut(s)	1166, 1682
BseMII	CTCAG	5 cut(s)	212, 241, 377, 890, 1152
BseNI	ACTGG	5 cut(s)	447, 481, 487, 1357, 1747
BseRI	GAGGAG	4 cut(s)	196, 687, 1420, 1490
BseXI	GCAGC	6 cut(s)	52, 780, 1588, 1591, 1759, 1781
BseYI	CCCAGC	1 cut(s)	871
BsgI	GTGCAG	3 cut(s)	624, 1380, 1462
Bsh1236I	CGCG	1 cut(s)	71
BshFI	GGCC	4 cut(s)	92, 239, 357, 497
BsiHKAI	GWGCWC	3 cut(s)	228, 703, 1242
BsiHKCI	CYCGRG	1 cut(s)	597
BsiSI	CCGG	5 cut(s)	140, 320, 437, 1648, 1670
BslFI	GGGAC	1 cut(s)	493
BslI	CCNNNNNNNGG	2 cut(s)	246, 778
BsmAI	GTCTC	4 cut(s)	447, 1319, 1561, 1656
BsmFI	GGGAC	1 cut(s)	493
BsnI	GGCC	4 cut(s)	92, 239, 357, 497
Bso31I	GGTCTC	1 cut(s)	1656
BsoBI	CYCGRG	1 cut(s)	597
Bsp119I	TTCGAA	2 cut(s)	263, 347
Bsp1286I	GDGCHC	4 cut(s)	157, 228, 703, 1242
Bsp13I	TCCGGA	1 cut(s)	139
Bsp1407I	TGTACA	1 cut(s)	1333
Bsp143I	GATC	6 cut(s)	814, 976, 1002, 1057, 1699, 1733
BspANI	GGCC	4 cut(s)	92, 239, 357, 497
BspCNI	CTCAG	5 cut(s)	211, 240, 376, 889, 1153
BspEI	TCCGGA	1 cut(s)	139
BspFNI	CGCG	1 cut(s)	71
BspHI	TCATGA	1 cut(s)	1663
BspLI	GGNNCC	3 cut(s)	93, 869, 1701
BspMAI	CTGCAG	1 cut(s)	1771
BspMI	ACCTGC	1 cut(s)	1434
BspPI	GGATC	3 cut(s)	1010, 1694, 1707
BspT104I	TTCGAA	2 cut(s)	263, 347
BspTNI	GGTCTC	1 cut(s)	1656
BsrDI	GCAATG	2 cut(s)	1166, 1682
BsrFI	RCCGGY	2 cut(s)	319, 436
BsrGI	TGTACA	1 cut(s)	1333
BsrI	ACTGG	5 cut(s)	447, 481, 487, 1357, 1747
BssAI	RCCGGY	2 cut(s)	319, 436
BssECI	CCNNGG	2 cut(s)	1264, 1670
BssMI	GATC	6 cut(s)	814, 976, 1002, 1057, 1699, 1733
BssNI	GRCGYC	2 cut(s)	5, 212
BssSI	CACGAG	2 cut(s)	465, 708
Bst2BI	CACGAG	2 cut(s)	465, 708
Bst2UI	CCWGG	1 cut(s)	738
Bst4CI	ACNGT	7 cut(s)	167, 658, 1069, 1237, 1414, 1471, 1545
Bst6I	CTCTTC	2 cut(s)	228, 1039
BstACI	GRCGYC	2 cut(s)	5, 212
BstAPI	GCANNNNNTGC	1 cut(s)	889
BstAUI	TGTACA	1 cut(s)	1333
BstBAI	YACGTR	1 cut(s)	685
BstBI	TTCGAA	2 cut(s)	263, 347
BstC8I	GCNNGC	9 cut(s)	132, 339, 359, 372, 438, 825, 890, 993, 1611
BstDEI	CTNAG	7 cut(s)	198, 227, 363, 876, 1052, 1161, 1619
BstDSI	CCRYGG	1 cut(s)	1264
BstEII	GGTNACC	1 cut(s)	1718
BstF5I	GGATG	4 cut(s)	1259, 1528, 1643, 1813
BstFNI	CGCG	1 cut(s)	71
BstHHI	GCGC	2 cut(s)	73, 1609
BstKTI	GATC	6 cut(s)	817, 979, 1005, 1060, 1702, 1736
BstMAI	GTCTC	4 cut(s)	447, 1319, 1561, 1656
BstMBI	GATC	6 cut(s)	814, 976, 1002, 1057, 1699, 1733
BstNI	CCWGG	1 cut(s)	738
BstNSI	RCATGY	2 cut(s)	892, 1505
BstPAI	GACNNNNGTC	1 cut(s)	1639
BstPI	GGTNACC	1 cut(s)	1718
BstSCI	CCNGG	3 cut(s)	736, 1646, 1669
BstSFI	CTRYAG	2 cut(s)	75, 1767
BstSNI	TACGTA	1 cut(s)	685
BstUI	CGCG	1 cut(s)	71
BstV1I	GCAGC	6 cut(s)	52, 780, 1588, 1591, 1759, 1781
BstV2I	GAAGAC	2 cut(s)	494, 1094
BstX2I	RGATCY	2 cut(s)	1699, 1733
BstYI	RGATCY	2 cut(s)	1699, 1733
BsuRI	GGCC	4 cut(s)	92, 239, 357, 497
BtgI	CCRYGG	1 cut(s)	1264
BtgZI	GCGATG	1 cut(s)	1322
BtrI	CACGTC	1 cut(s)	1358
BtsCI	GGATG	4 cut(s)	1259, 1528, 1643, 1813
BtsIMutI	CAGTG	7 cut(s)	172, 235, 440, 654, 1233, 1248, 1740
BveI	ACCTGC	1 cut(s)	1434
Cac8I	GCNNGC	9 cut(s)	132, 339, 359, 372, 438, 825, 890, 993, 1611
CaiI	CAGNNNCTG	2 cut(s)	1570, 1775
CciI	TCATGA	1 cut(s)	1663
CfoI	GCGC	2 cut(s)	73, 1609
Cfr10I	RCCGGY	2 cut(s)	319, 436
Cfr13I	GGNCC	3 cut(s)	91, 355, 583
CseI	GACGC	2 cut(s)	220, 652
Csp6I	GTAC	3 cut(s)	800, 1334, 1350
CspCI	CAANNNNNGTGG	4 cut(s)	597, 632, 1237, 1272
CviAII	CATG	5 cut(s)	45, 889, 1172, 1502, 1664
CviQI	GTAC	3 cut(s)	800, 1334, 1350
DdeI	CTNAG	7 cut(s)	198, 227, 363, 876, 1052, 1161, 1619
DpnI	GATC	6 cut(s)	816, 978, 1004, 1059, 1701, 1735
DpnII	GATC	6 cut(s)	814, 976, 1002, 1057, 1699, 1733
DriI	GACNNNNNGTC	1 cut(s)	283
Eam1104I	CTCTTC	2 cut(s)	228, 1039
Eam1105I	GACNNNNNGTC	1 cut(s)	283
EarI	CTCTTC	2 cut(s)	228, 1039
EciI	GGCGGA	1 cut(s)	1452
Eco105I	TACGTA	1 cut(s)	685
Eco147I	AGGCCT	1 cut(s)	239
Eco24I	GRGCYC	1 cut(s)	157
Eco31I	GGTCTC	1 cut(s)	1656
Eco47I	GGWCC	1 cut(s)	583
Eco88I	CYCGRG	1 cut(s)	597
Eco91I	GGTNACC	1 cut(s)	1718
EcoO65I	GGTNACC	1 cut(s)	1718
EcoRII	CCWGG	1 cut(s)	736
EcoT38I	GRGCYC	1 cut(s)	157
FaeI	CATG	5 cut(s)	48, 892, 1175, 1505, 1667
FaqI	GGGAC	1 cut(s)	493
FatI	CATG	5 cut(s)	44, 888, 1171, 1501, 1663
FbaI	TGATCA	2 cut(s)	814, 976
FokI	GGATG	4 cut(s)	1246, 1515, 1630, 1820
FriOI	GRGCYC	1 cut(s)	157
FspBI	CTAG	6 cut(s)	251, 431, 573, 929, 1149, 1731
GlaI	GCGC	2 cut(s)	72, 1608
GsaI	CCCAGC	1 cut(s)	875
HaeIII	GGCC	4 cut(s)	92, 239, 357, 497
HapII	CCGG	5 cut(s)	140, 320, 437, 1648, 1670
HgaI	GACGC	2 cut(s)	220, 652
HhaI	GCGC	2 cut(s)	73, 1609
Hin1I	GRCGYC	2 cut(s)	5, 212
Hin1II	CATG	5 cut(s)	48, 892, 1175, 1505, 1667
Hin6I	GCGC	2 cut(s)	71, 1607
HinP1I	GCGC	2 cut(s)	71, 1607
HincII	GTYRAC	2 cut(s)	718, 1288
HindII	GTYRAC	2 cut(s)	718, 1288
HindIII	AAGCTT	1 cut(s)	989
HinfI	GANTC	9 cut(s)	40, 278, 284, 296, 505, 635, 1319, 1487, 1535
HpaII	CCGG	5 cut(s)	140, 320, 437, 1648, 1670
HphI	GGTGA	4 cut(s)	266, 794, 931, 986
Hpy166II	GTNNAC	6 cut(s)	619, 718, 1268, 1288, 1392, 1677
Hpy8I	GTNNAC	6 cut(s)	619, 718, 1268, 1288, 1392, 1677
Hpy99I	CGWCG	6 cut(s)	10, 91, 100, 103, 214, 1561
HpyAV	CCTTC	4 cut(s)	250, 259, 440, 992
HpyCH4III	ACNGT	7 cut(s)	167, 658, 1069, 1237, 1414, 1471, 1545
HpyCH4IV	ACGT	5 cut(s)	684, 720, 1114, 1284, 1357
HpyF3I	CTNAG	7 cut(s)	198, 227, 363, 876, 1052, 1161, 1619
HpySE526I	ACGT	5 cut(s)	684, 720, 1114, 1284, 1357
Hsp92I	GRCGYC	2 cut(s)	5, 212
Hsp92II	CATG	5 cut(s)	48, 892, 1175, 1505, 1667
HspAI	GCGC	2 cut(s)	71, 1607
Kpn2I	TCCGGA	1 cut(s)	139
KroI	GCCGGC	1 cut(s)	436
KroNI	GCCGGC	1 cut(s)	438
Ksp22I	TGATCA	2 cut(s)	814, 976
Kzo9I	GATC	6 cut(s)	814, 976, 1002, 1057, 1699, 1733
LmnI	GCTCC	2 cut(s)	271, 873
Lsp1109I	GCAGC	6 cut(s)	52, 780, 1588, 1591, 1759, 1781
LweI	GCATC	4 cut(s)	810, 1108, 1198, 1268
MaeI	CTAG	6 cut(s)	251, 431, 573, 929, 1149, 1731
MaeII	ACGT	5 cut(s)	684, 720, 1114, 1284, 1357
MaeIII	GTNAC	4 cut(s)	254, 1456, 1718, 1738
MalI	GATC	6 cut(s)	816, 978, 1004, 1059, 1701, 1735
MboI	GATC	6 cut(s)	814, 976, 1002, 1057, 1699, 1733
MboII	GAAGA	9 cut(s)	245, 393, 499, 542, 560, 854, 1026, 1099, 1589
MflI	RGATCY	2 cut(s)	1699, 1733
MhlI	GDGCHC	4 cut(s)	157, 228, 703, 1242
MluCI	AATT	6 cut(s)	217, 350, 855, 1229, 1692, 1800
MlyI	GAGTC	5 cut(s)	34, 272, 293, 305, 1496
MmeI	TCCRAC	4 cut(s)	267, 279, 709, 811
MroI	TCCGGA	1 cut(s)	139
MroNI	GCCGGC	1 cut(s)	436
MroXI	GAANNNNTTC	1 cut(s)	855
MseI	TTAA	5 cut(s)	516, 630, 1142, 1209, 1799
MslI	CAYNNNNRTG	1 cut(s)	917
MspA1I	CMGCKG	2 cut(s)	367, 1772
MspI	CCGG	5 cut(s)	140, 320, 437, 1648, 1670
MspR9I	CCNGG	3 cut(s)	738, 1648, 1671
MvaI	CCWGG	1 cut(s)	738
MvnI	CGCG	1 cut(s)	71
NaeI	GCCGGC	1 cut(s)	438
NciI	CCSGG	2 cut(s)	1648, 1671
NdeII	GATC	6 cut(s)	814, 976, 1002, 1057, 1699, 1733
NgoMIV	GCCGGC	1 cut(s)	436
NlaIII	CATG	5 cut(s)	48, 892, 1175, 1505, 1667
NlaIV	GGNNCC	3 cut(s)	93, 869, 1701
NmuCI	GTSAC	2 cut(s)	254, 1738
NspI	RCATGY	2 cut(s)	892, 1505
NspV	TTCGAA	2 cut(s)	263, 347
OliI	CACNNNNGTG	1 cut(s)	917
PaeI	GCATGC	1 cut(s)	892
PagI	TCATGA	1 cut(s)	1663
PceI	AGGCCT	1 cut(s)	239
PciI	ACATGT	1 cut(s)	1501
PcsI	WCGNNNNNNNCGW	5 cut(s)	92, 95, 1345, 1354, 1377
PdiI	GCCGGC	1 cut(s)	438
PdmI	GAANNNNTTC	1 cut(s)	855
PfeI	GAWTC	4 cut(s)	505, 635, 1319, 1535
PleI	GAGTC	5 cut(s)	34, 272, 292, 304, 1495
PpsI	GAGTC	5 cut(s)	34, 272, 292, 304, 1495
Ppu21I	YACGTR	1 cut(s)	685
PscI	ACATGT	1 cut(s)	1501
PshAI	GACNNNNGTC	1 cut(s)	1639
PsiI	TTATAA	1 cut(s)	1064
Psp1406I	AACGTT	1 cut(s)	1284
Psp6I	CCWGG	1 cut(s)	736
PspEI	GGTNACC	1 cut(s)	1718
PspFI	CCCAGC	1 cut(s)	871
PspGI	CCWGG	1 cut(s)	736
PspN4I	GGNNCC	3 cut(s)	93, 869, 1701
PspPI	GGNCC	3 cut(s)	91, 355, 583
PstI	CTGCAG	1 cut(s)	1771
PstNI	CAGNNNCTG	2 cut(s)	1570, 1775
PsuI	RGATCY	2 cut(s)	1699, 1733
PvuII	CAGCTG	1 cut(s)	1772
RsaI	GTAC	3 cut(s)	801, 1335, 1351
RsaNI	GTAC	3 cut(s)	800, 1334, 1350
RseI	CAYNNNNRTG	1 cut(s)	917
SaqAI	TTAA	5 cut(s)	516, 630, 1142, 1209, 1799
Sau3AI	GATC	6 cut(s)	814, 976, 1002, 1057, 1699, 1733
Sau96I	GGNCC	3 cut(s)	91, 355, 583
SchI	GAGTC	5 cut(s)	34, 272, 293, 305, 1496
ScrFI	CCNGG	3 cut(s)	738, 1648, 1671
SduI	GDGCHC	4 cut(s)	157, 228, 703, 1242
SfaNI	GCATC	4 cut(s)	810, 1108, 1198, 1268
SfcI	CTRYAG	2 cut(s)	75, 1767
SfuI	TTCGAA	2 cut(s)	263, 347
SinI	GGWCC	1 cut(s)	583
SmiMI	CAYNNNNRTG	1 cut(s)	917
SmlI	CTYRAG	3 cut(s)	383, 773, 1424
SmoI	CTYRAG	3 cut(s)	383, 773, 1424
SnaBI	TACGTA	1 cut(s)	685
SphI	GCATGC	1 cut(s)	892
Sse9I	AATT	6 cut(s)	217, 350, 855, 1229, 1692, 1800
SseBI	AGGCCT	1 cut(s)	239
SspI	AATATT	2 cut(s)	794, 941
SspMI	CTAG	6 cut(s)	251, 431, 573, 929, 1149, 1731
StuI	AGGCCT	1 cut(s)	239
StyD4I	CCNGG	3 cut(s)	736, 1646, 1669
TaaI	ACNGT	7 cut(s)	167, 658, 1069, 1237, 1414, 1471, 1545
TaiI	ACGT	5 cut(s)	687, 723, 1117, 1287, 1360
TaqI	TCGA	4 cut(s)	8, 263, 347, 451
TasI	AATT	6 cut(s)	217, 350, 855, 1229, 1692, 1800
TatI	WGTACW	1 cut(s)	1333
TauI	GCSGC	6 cut(s)	71, 114, 117, 120, 370, 768
TfiI	GAWTC	4 cut(s)	505, 635, 1319, 1535
Tru1I	TTAA	5 cut(s)	516, 630, 1142, 1209, 1799
Tru9I	TTAA	5 cut(s)	516, 630, 1142, 1209, 1799
TscAI	CASTG	7 cut(s)	172, 235, 447, 661, 1240, 1255, 1747
TseFI	GTSAC	2 cut(s)	254, 1738
TseI	GCWGC	6 cut(s)	65, 768, 1601, 1604, 1769, 1772
Tsp45I	GTSAC	2 cut(s)	254, 1738
TspDTI	ATGAA	9 cut(s)	552, 669, 822, 1140, 1320, 1517, 1680, 1794, 1824
TspGWI	ACGGA	1 cut(s)	1629
TspRI	CASTG	7 cut(s)	172, 235, 447, 661, 1240, 1255, 1747
VpaK11BI	GGWCC	1 cut(s)	583
XapI	RAATTY	1 cut(s)	1229
XceI	RCATGY	2 cut(s)	892, 1505
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1288
XmnI	GAANNNNTTC	1 cut(s)	855
XspI	CTAG	6 cut(s)	251, 431, 573, 929, 1149, 1731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.