Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003526.1

Orthogroup ID

OG0005339

Physical Location & Seq

Genomic Coordinates Forward (+)

56689 .. 61188

Gene Structure 4500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3036 bp

atggacggcatgtaccattcttgggtcgagcttcaaacttggggtaccacaatgataattttgcatagtcgggtattgaagttaggagtcggcttaagttcggcgaatcgttttccaaaaacatggaaagcgtttgtgatcctcaacagcccaggggaacactacagtgtttgtagacagggttctagttccagggccgtcacgtctgattttcaaggccagcaggcagcagcctctctctattctctttttctcccctacttgcttggaacgcacaaagctcctctctttcacggcagagagagcagcgccgccgcctccaccgccgctgcccttctctctctgtactctgctgttgtctctagacagacccagaaggccattttgggtgataccatggcacaaaatttgttgcgcgcaaagcatataggtaacctctcaactagtgctagatcattttttctcagcgggtcacgatgtagtgcaacagagggaaattcatgcacttgctctgaagatgaaaactgtgccccacaaaggcagcaagcaagaaatagaggtcttcttgcccaaaatccatcaagcaccggatctaaaccttctgcaagggcaggaatcttagtttcgggagatgcagtgaaagtggcagattctcgtaaatctgagagtgttgaccagacaacttctataaaacaggtggcaactgccccaacaccttttgtgaggtcaggtactgtaagttatgctagcaacattgatggcattcagaaggatgtaagctcatcacctcttgctacagagcaatttgttaaggccggtgttgcagctgtcaattttttgtcagatatagtgagttataagattcctttgtctgatgggatggggatgcttagtttgccaaaaaacactgtggttcgttccaccgtgggagtctccagtgtcaagtcatcaaatgtgaagcagataaagaaagagcatttcactaatgtgcatccaaagccatctactgagagagcagcagcttcagagcgtacgagtaatcatcagggatcacagggaaatgttgataaatctagttctgttagaggtctaaatcatgttccatataacaggacagaaaactcagcagcggctcacagtgttcagactccagaaactcatgatagaagggctttgcctcgaaaatcaaaagctcagcaaaaccacttcgttccagatttcagttccaatgtacagatttcagatgcagagacttctagatgtggccctaaaggtttcaataaacctgcaagagagatgaaaatgccaacagggattgctccattcaacaggcagtgtgcgcacaaggggaatgttgttcaaaatgtttctcacatactgcaacagcttaaatggggcccttctgcagaggcagctcttggaagtctcaactgttcaatggacgcatatcaagccaaccaaattttgaagcaaattcaagatcattttgttgctcttggattttttaattggttaaaacgacaagcaggattcaggcatgatgggcacacttacaccaccatggttggcatccttggtcgtgccaggcagttcggcgccatcaataaattgcttaatcagatggtgaatgaaggatgtcaaccaaatgttgtgacatacaatcgtctgattcatagttatggtcgcgcaaactatttgaaagacgcaatgaatgtgttcagtcaaatgcaagaagcaggttgtgagcctgaccgcgtcacctactgtacactcattgacatccatgctaaatctgggtttcttgatgtcgcccttggactgtatgataggatgcaagaggctggtctttcgcctgacacatttacttacagtgttatgatcaactgccttgggaaagctggccatttagctgcagctcaccggctgttctgtgagatggtggatcatggttgtgttcccaacctggtcacctataatatcatgatagctttgcaggccaaagcaaggaactatgagactgctttaaagctctaccgtgacatgcagggagctggatttcagccagataaagtgacttatagcatagtaatggaggtgcttggccattgtggatacctggaggaggcagaagcactttttggtgaaatgaaacggaagaattgggtacctgatgaacctgtttatggccttttagttgatttgtggggcaaggctggtaatgtgcaaaaagcctgggattggtatcaagcaatgctccatgctggtttgcgtcctaatgtgcctacttgcaattctcttctcagtgcgtttcttagggtgcaccgtttgtctgatgcctataacttgttgcagagcatggtgggcttaggtctgaacccttctttgcagacatataccttgcttctcagttgttgcacagaagcacgatcaccatatgacatggaattttgttgtgagctcatggcagtcacacgccatcctgctcatacattcctactgtctatgccatcagcaggacccgatggccaaaacgtgagagaacacatgagcagcttcttggatctgatgcatagtgaggatagagaaagcaagagggggcttgtagatgcagtagtggatttccttcataaatcagggctcaaggaggaggctggttctgtctgggaggtggctgcgcagaagaatgtttatccagacgccgtcaaagagaaaggctcatgttattggcttataaacctacatgttatgtctgatggtactgctgtgacagcactatcaaggacacttgcttggtttcgccaagaaatgctgatatccggggtttgtccaaaccgaattgatattgtgacaggatggggacggcggagtagggttacaggaacttctatggtgaggcatgcagtgcaggaattgctgcacatgtttagtttcccgtttttcaccgagaatgggaattctgggtgctttgtaggatgtggggagtctcttaatagatggttactcgaatcttatgtggagcggatgcatttattgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

1011

Amino Acids

111.14

Weight (kDa)

8.89

Isoelectric Point (pI)

38.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	509 - 561	1.1e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	516 - 554	6.8e-08	PPR repeat family
PPR_3	PF13812	536 - 594	1.5e-13	Pentatricopeptide repeat domain
PPR_1	PF12854	545 - 577	1.3e-10	PPR repeat
PPR_2	PF13041	548 - 596	8.3e-16	PPR repeat family
PPR	PF01535	551 - 581	9.2e-07	PPR repeat
PPR_3	PF13812	572 - 632	2.7e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	580 - 612	1.4e-06	PPR repeat
PPR	PF01535	586 - 616	1e-05	PPR repeat
PPR_2	PF13041	590 - 632	2.9e-09	PPR repeat family
PPR_long	PF17177	601 - 702	2.7e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	608 - 664	4.7e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	615 - 647	1.8e-08	PPR repeat
PPR	PF01535	621 - 651	2e-06	PPR repeat
PPR_2	PF13041	626 - 662	7.4e-11	PPR repeat family
PPR_3	PF13812	641 - 701	1.7e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	653 - 700	4.1e-13	PPR repeat family
PPR	PF01535	691 - 720	5.4e-06	PPR repeat
PPR_3	PF13812	751 - 805	1e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	758 - 805	5.9e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18900 AT1G18900 AT1G18900 AT1G18900
fragaria_vesca	FvH4_5g15730 FvH4_5g15730 FvH4_5g15730
malus_domestica	MD06G1185900.v1.1 MD14G1192100.v1.1
prunus_persica	Prupe.5G184700_v2.0.a1 Prupe.5G184700_v2.0.a1 Prupe.5G184700_v2.0.a1 Prupe.5G184700_v2.0.a1 Prupe.5G184700_v2.0.a1
pyrus_communis	pycom06g16530 pycom14g15980
rosa_chinensis	RchiOBHm_Chr7g0180381
rosa_laevigata	RLG00000005272
rosa_multiflora	Rmu_sc0003526.1_g000009
rosa_roxburghii	Rroxscaffold_3G00272940
rosa_rugosa	Rorug06G0432600 Rorug06G0432700 Rorug06G0432800 Rorug06G0432800
rosa_samantha	Rh7AG033200 Rh7BG033100 Rh7CG035000 Rh7DG033600
rosa_wichuraiana	Rw7G002770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	858, 2732
Acc16I	TGCGCA	2 cut(s)	1341, 2676
Acc36I	ACCTGC	2 cut(s)	1294, 1727
Acc65I	GGTACC	2 cut(s)	44, 2164
AccB1I	GGYRCC	3 cut(s)	44, 1595, 2164
AccBSI	CCGCTC	1 cut(s)	3019
AccI	GTMKAC	1 cut(s)	175
AccII	CGCG	3 cut(s)	417, 1686, 1755
AciI	CCGC	9 cut(s)	312, 315, 324, 327, 468, 1130, 1753, 2863, 3019
AclWI	GGATC	5 cut(s)	133, 598, 1057, 1950, 2568
AcoI	YGGCCR	3 cut(s)	1900, 2101, 2524
AcsI	RAATTY	6 cut(s)	406, 496, 1461, 1473, 2444, 2953
AcuI	CTGAAG	2 cut(s)	534, 1008
AcyI	GRCGYC	2 cut(s)	1596, 2697
AfaI	GTAC	9 cut(s)	14, 46, 347, 733, 1033, 1233, 1768, 2166, 2758
AfiI	CCNNNNNNNGG	8 cut(s)	22, 537, 2004, 2122, 2183, 2238, 2513, 2949
AflII	CTTAAG	1 cut(s)	94
AflIII	ACRYGT	2 cut(s)	2740, 2919
AhlI	ACTAGT	1 cut(s)	443
AjiI	CACGTC	1 cut(s)	204
AjnI	CCWGG	6 cut(s)	151, 191, 1583, 1962, 2115, 2231
AjuI	GAANNNNNNNTTGG	4 cut(s)	368, 400, 2121, 2153
AleI	CACNNNNGTG	2 cut(s)	165, 986
Alw21I	GWGCWC	2 cut(s)	2322, 2460
Alw26I	GTCTC	6 cut(s)	364, 937, 1244, 1430, 2009, 2988
Alw44I	GTGCAC	1 cut(s)	2318
AlwI	GGATC	5 cut(s)	133, 598, 1057, 1950, 2568
AlwNI	CAGNNNCTG	1 cut(s)	734
ApaI	GGGCCC	1 cut(s)	1400
ApaLI	GTGCAC	1 cut(s)	2318
ApoI	RAATTY	6 cut(s)	406, 496, 1461, 1473, 2444, 2953
Asp700I	GAANNNNTTC	1 cut(s)	1715
Asp718I	GGTACC	2 cut(s)	44, 2164
AspLEI	GCGC	7 cut(s)	311, 417, 419, 1342, 1598, 1688, 2677
AspS9I	GGNCC	5 cut(s)	195, 1265, 1396, 1397, 2516
AsuC2I	CCSGG	1 cut(s)	2818
AsuNHI	GCTAGC	1 cut(s)	746
AvaII	GGWCC	1 cut(s)	2516
BaeGI	GKGCMC	4 cut(s)	532, 1400, 1548, 2322
BaeI	ACNNNNGTAYC	2 cut(s)	2748, 2781
BalI	TGGCCA	3 cut(s)	1902, 2103, 2526
BanI	GGYRCC	3 cut(s)	44, 1595, 2164
BanII	GRGCYC	3 cut(s)	1400, 2460, 2640
BbsI	GAAGAC	1 cut(s)	554
Bbv12I	GWGCWC	2 cut(s)	2322, 2460
BceAI	ACGGC	5 cut(s)	22, 182, 310, 2684, 2876
BciT130I	CCWGG	6 cut(s)	153, 193, 1585, 1964, 2117, 2233
BciVI	GTATCC	1 cut(s)	2105
BclI	TGATCA	1 cut(s)	1878
BcnI	CCSGG	1 cut(s)	2818
BcoDI	GTCTC	6 cut(s)	364, 937, 1244, 1430, 2009, 2988
BcuI	ACTAGT	1 cut(s)	443
BfaI	CTAG	7 cut(s)	186, 363, 444, 450, 747, 1074, 1257
BfmI	CTRYAG	4 cut(s)	163, 795, 1404, 1911
BfoI	RGCGCY	2 cut(s)	312, 1599
BfrI	CTTAAG	1 cut(s)	94
BfuAI	ACCTGC	2 cut(s)	1294, 1727
BfuI	GTATCC	1 cut(s)	2105
BlpI	GCTNAGC	1 cut(s)	1194
Bme1390I	CCNGG	7 cut(s)	153, 193, 1585, 1964, 2117, 2233, 2818
Bme18I	GGWCC	1 cut(s)	2516
BmgBI	CACGTC	1 cut(s)	204
BmgT120I	GGNCC	5 cut(s)	195, 1265, 1396, 1397, 2516
BmiI	GGNNCC	6 cut(s)	46, 1397, 1398, 1597, 2166, 2518
BmrFI	CCNGG	7 cut(s)	153, 193, 1585, 1964, 2117, 2233, 2818
BmtI	GCTAGC	1 cut(s)	750
BpiI	GAAGAC	1 cut(s)	554
BplI	GAGNNNNNCTC	2 cut(s)	2699, 2731
BpmI	CTGGAG	3 cut(s)	919, 1134, 2138
Bpu10I	CCTNAGC	1 cut(s)	2365
Bpu1102I	GCTNAGC	1 cut(s)	1194
BpuEI	CTTGAG	1 cut(s)	2624
BpuMI	CCSGG	1 cut(s)	2818
BsaBI	GATNNNNATC	1 cut(s)	2241
BsaHI	GRCGYC	2 cut(s)	1596, 2697
BsaWI	WCCGGW	1 cut(s)	587
BsaXI	ACNNNNNCTCC	2 cut(s)	621, 651
Bsc4I	CCNNNNNNNGG	8 cut(s)	22, 537, 2004, 2122, 2183, 2238, 2513, 2949
Bse118I	RCCGGY	2 cut(s)	815, 1920
Bse1I	ACTGG	1 cut(s)	936
Bse3DI	GCAATG	2 cut(s)	1713, 2256
Bse8I	GATNNNNATC	1 cut(s)	2241
BseBI	CCWGG	6 cut(s)	153, 193, 1585, 1964, 2117, 2233
BseJI	GATNNNNATC	1 cut(s)	2241
BseLI	CCNNNNNNNGG	8 cut(s)	22, 537, 2004, 2122, 2183, 2238, 2513, 2949
BseMI	GCAATG	2 cut(s)	1713, 2256
BseMII	CTCAG	7 cut(s)	478, 654, 999, 1137, 1208, 2314, 2419
BseNI	ACTGG	1 cut(s)	936
BsePI	GCGCGC	1 cut(s)	415
BseRI	GAGGAG	3 cut(s)	273, 2135, 2660
BseSI	GKGCMC	4 cut(s)	532, 1400, 1548, 2322
BsgI	GTGCAG	2 cut(s)	2900, 2924
Bsh1236I	CGCG	3 cut(s)	417, 1686, 1755
BshNI	GGYRCC	3 cut(s)	44, 1595, 2164
BsiHKAI	GWGCWC	2 cut(s)	2322, 2460
BsiSI	CCGG	4 cut(s)	588, 816, 1921, 2817
BsiWI	CGTACG	1 cut(s)	1031
BslFI	GGGAC	1 cut(s)	2871
BslI	CCNNNNNNNGG	8 cut(s)	22, 537, 2004, 2122, 2183, 2238, 2513, 2949
BsmAI	GTCTC	6 cut(s)	364, 937, 1244, 1430, 2009, 2988
BsmFI	GGGAC	1 cut(s)	2871
BsmI	GAATGC	1 cut(s)	762
Bsp120I	GGGCCC	1 cut(s)	1396
Bsp1286I	GDGCHC	6 cut(s)	532, 1400, 1548, 2322, 2460, 2640
Bsp1407I	TGTACA	2 cut(s)	1231, 1766
Bsp143I	GATC	9 cut(s)	138, 452, 590, 1049, 1480, 1878, 1942, 2426, 2560
Bsp1720I	GCTNAGC	1 cut(s)	1194
Bsp19I	CCATGG	2 cut(s)	396, 1560
BspACI	CCGC	9 cut(s)	312, 315, 324, 327, 468, 1130, 1753, 2863, 3019
BspCNI	CTCAG	7 cut(s)	477, 655, 1000, 1136, 1207, 2313, 2418
BspFNI	CGCG	3 cut(s)	417, 1686, 1755
BspHI	TCATGA	2 cut(s)	1159, 1980
BspLI	GGNNCC	6 cut(s)	46, 1397, 1398, 1597, 2166, 2518
BspMAI	CTGCAG	2 cut(s)	1408, 1915
BspMI	ACCTGC	2 cut(s)	1294, 1727
BspOI	GCTAGC	1 cut(s)	750
BspPI	GGATC	5 cut(s)	133, 598, 1057, 1950, 2568
BspT107I	GGYRCC	3 cut(s)	44, 1595, 2164
BspTI	CTTAAG	1 cut(s)	94
BsrBI	CCGCTC	1 cut(s)	3019
BsrDI	GCAATG	2 cut(s)	1713, 2256
BsrFI	RCCGGY	2 cut(s)	815, 1920
BsrGI	TGTACA	2 cut(s)	1231, 1766
BsrI	ACTGG	1 cut(s)	936
BssAI	RCCGGY	2 cut(s)	815, 1920
BssHII	GCGCGC	1 cut(s)	415
BssMI	GATC	9 cut(s)	138, 452, 590, 1049, 1480, 1878, 1942, 2426, 2560
BssNI	GRCGYC	2 cut(s)	1596, 2697
BssT1I	CCWWGG	5 cut(s)	396, 1560, 1573, 1813, 1888
Bst2UI	CCWGG	6 cut(s)	153, 193, 1585, 1964, 2117, 2233
Bst6I	CTCTTC	1 cut(s)	2301
BstACI	GRCGYC	2 cut(s)	1596, 2697
BstAFI	CTTAAG	1 cut(s)	94
BstAPI	GCANNNNNTGC	2 cut(s)	2902, 2911
BstAUI	TGTACA	2 cut(s)	1231, 1766
BstC8I	GCNNGC	8 cut(s)	221, 225, 417, 546, 748, 1900, 1995, 2898
BstDSI	CCRYGG	3 cut(s)	396, 924, 1560
BstEII	GGTNACC	2 cut(s)	431, 1966
BstENI	CCTNNNNNAGG	1 cut(s)	2120
BstFNI	CGCG	3 cut(s)	417, 1686, 1755
BstH2I	RGCGCY	2 cut(s)	312, 1599
BstHHI	GCGC	7 cut(s)	311, 417, 419, 1342, 1598, 1688, 2677
BstKTI	GATC	9 cut(s)	141, 455, 593, 1052, 1483, 1881, 1945, 2429, 2563
BstMAI	GTCTC	6 cut(s)	364, 937, 1244, 1430, 2009, 2988
BstMBI	GATC	9 cut(s)	138, 452, 590, 1049, 1480, 1878, 1942, 2426, 2560
BstNI	CCWGG	6 cut(s)	153, 193, 1585, 1964, 2117, 2233
BstNSI	RCATGY	5 cut(s)	13, 2044, 2744, 2900, 2923
BstPI	GGTNACC	2 cut(s)	431, 1966
BstSCI	CCNGG	7 cut(s)	151, 191, 1583, 1962, 2115, 2231, 2816
BstSFI	CTRYAG	4 cut(s)	163, 795, 1404, 1911
BstSLI	GKGCMC	4 cut(s)	532, 1400, 1548, 2322
BstUI	CGCG	3 cut(s)	417, 1686, 1755
BstV2I	GAAGAC	1 cut(s)	554
BstX2I	RGATCY	2 cut(s)	590, 2560
BstXI	CCANNNNNNTGG	1 cut(s)	123
BstYI	RGATCY	2 cut(s)	590, 2560
BsuI	GTATCC	1 cut(s)	2105
BtgI	CCRYGG	3 cut(s)	396, 924, 1560
BtrI	CACGTC	1 cut(s)	204
BtsI	GCAGTG	3 cut(s)	642, 1340, 2907
BtsIMutI	CAGTG	9 cut(s)	172, 642, 906, 943, 1144, 1340, 1876, 2308, 2907
BveI	ACCTGC	2 cut(s)	1294, 1727
Cac8I	GCNNGC	8 cut(s)	221, 225, 417, 546, 748, 1900, 1995, 2898
CaiI	CAGNNNCTG	1 cut(s)	734
CciI	TCATGA	2 cut(s)	1159, 1980
CfoI	GCGC	7 cut(s)	311, 417, 419, 1342, 1598, 1688, 2677
Cfr10I	RCCGGY	2 cut(s)	815, 1920
Cfr13I	GGNCC	5 cut(s)	195, 1265, 1396, 1397, 2516
CseI	GACGC	5 cut(s)	1451, 1712, 1744, 2258, 2705
CsiI	ACCWGGT	1 cut(s)	1962
Csp6I	GTAC	9 cut(s)	13, 45, 346, 732, 1032, 1232, 1767, 2165, 2757
CspCI	CAANNNNNGTGG	2 cut(s)	1546, 1581
CviQI	GTAC	9 cut(s)	13, 45, 346, 732, 1032, 1232, 1767, 2165, 2757
DinI	GGCGCC	1 cut(s)	1597
DpnI	GATC	9 cut(s)	140, 454, 592, 1051, 1482, 1880, 1944, 2428, 2562
DpnII	GATC	9 cut(s)	138, 452, 590, 1049, 1480, 1878, 1942, 2426, 2560
DraI	TTTAAA	1 cut(s)	2025
EaeI	YGGCCR	3 cut(s)	1900, 2101, 2524
Eam1104I	CTCTTC	1 cut(s)	2301
EarI	CTCTTC	1 cut(s)	2301
EciI	GGCGGA	1 cut(s)	2878
Ecl136II	GAGCTC	1 cut(s)	2458
Eco130I	CCWWGG	5 cut(s)	396, 1560, 1573, 1813, 1888
Eco24I	GRGCYC	3 cut(s)	1400, 2460, 2640
Eco32I	GATATC	1 cut(s)	2814
Eco47I	GGWCC	1 cut(s)	2516
Eco53kI	GAGCTC	1 cut(s)	2458
Eco57I	CTGAAG	2 cut(s)	534, 1008
Eco91I	GGTNACC	2 cut(s)	431, 1966
EcoICRI	GAGCTC	1 cut(s)	2458
EcoNI	CCTNNNNNAGG	1 cut(s)	2120
EcoO109I	RGGNCCY	3 cut(s)	1396, 1397, 2516
EcoO65I	GGTNACC	2 cut(s)	431, 1966
EcoRI	GAATTC	1 cut(s)	2953
EcoRII	CCWGG	6 cut(s)	151, 191, 1583, 1962, 2115, 2231
EcoRV	GATATC	1 cut(s)	2814
EcoT14I	CCWWGG	5 cut(s)	396, 1560, 1573, 1813, 1888
EcoT22I	ATGCAT	2 cut(s)	2571, 3027
EcoT38I	GRGCYC	3 cut(s)	1400, 2460, 2640
EgeI	GGCGCC	1 cut(s)	1597
EheI	GGCGCC	1 cut(s)	1597
ErhI	CCWWGG	5 cut(s)	396, 1560, 1573, 1813, 1888
FaqI	GGGAC	1 cut(s)	2871
FauI	CCCGC	1 cut(s)	461
FauNDI	CATATG	1 cut(s)	2434
FbaI	TGATCA	1 cut(s)	1878
FblI	GTMKAC	1 cut(s)	175
FriOI	GRGCYC	3 cut(s)	1400, 2460, 2640
FspAI	RTGCGCAY	1 cut(s)	1341
FspBI	CTAG	7 cut(s)	186, 363, 444, 450, 747, 1074, 1257
FspI	TGCGCA	2 cut(s)	1341, 2676
GlaI	GCGC	7 cut(s)	310, 416, 418, 1341, 1597, 1687, 2676
GsuI	CTGGAG	3 cut(s)	919, 1134, 2138
HaeII	RGCGCY	2 cut(s)	312, 1599
HapII	CCGG	4 cut(s)	588, 816, 1921, 2817
HgaI	GACGC	5 cut(s)	1451, 1712, 1744, 2258, 2705
HhaI	GCGC	7 cut(s)	311, 417, 419, 1342, 1598, 1688, 2677
Hin1I	GRCGYC	2 cut(s)	1596, 2697
Hin6I	GCGC	7 cut(s)	309, 415, 417, 1340, 1596, 1686, 2675
HinP1I	GCGC	7 cut(s)	309, 415, 417, 1340, 1596, 1686, 2675
HincII	GTYRAC	2 cut(s)	673, 1640
HindII	GTYRAC	2 cut(s)	673, 1640
HpaII	CCGG	4 cut(s)	588, 816, 1921, 2817
Hpy166II	GTNNAC	5 cut(s)	176, 673, 1640, 1769, 2320
Hpy8I	GTNNAC	5 cut(s)	176, 673, 1640, 1769, 2320
HpyAV	CCTTC	9 cut(s)	344, 370, 609, 763, 1161, 1410, 1625, 2388, 2633
HpyCH4IV	ACGT	2 cut(s)	203, 2532
HpySE526I	ACGT	2 cut(s)	203, 2532
Hsp92I	GRCGYC	2 cut(s)	1596, 2697
HspAI	GCGC	7 cut(s)	309, 415, 417, 1340, 1596, 1686, 2675
KasI	GGCGCC	1 cut(s)	1595
KpnI	GGTACC	2 cut(s)	48, 2168
Ksp22I	TGATCA	1 cut(s)	1878
Kzo9I	GATC	9 cut(s)	138, 452, 590, 1049, 1480, 1878, 1942, 2426, 2560
LmnI	GCTCC	5 cut(s)	286, 1324, 2048, 2259, 3016
MabI	ACCWGGT	1 cut(s)	1962
MaeI	CTAG	7 cut(s)	186, 363, 444, 450, 747, 1074, 1257
MaeII	ACGT	2 cut(s)	203, 2532
MalI	GATC	9 cut(s)	140, 454, 592, 1051, 1482, 1880, 1944, 2428, 2562
MbiI	CCGCTC	1 cut(s)	3019
MboI	GATC	9 cut(s)	138, 452, 590, 1049, 1480, 1878, 1942, 2426, 2560
MboII	GAAGA	5 cut(s)	527, 554, 2167, 2288, 2692
MflI	RGATCY	2 cut(s)	590, 2560
MhlI	GDGCHC	6 cut(s)	532, 1400, 1548, 2322, 2460, 2640
MlsI	TGGCCA	3 cut(s)	1902, 2103, 2526
MluNI	TGGCCA	3 cut(s)	1902, 2103, 2526
Mly113I	GGCGCC	1 cut(s)	1596
MlyI	GAGTC	4 cut(s)	96, 939, 1141, 2990
Mox20I	TGGCCA	3 cut(s)	1902, 2103, 2526
Mph1103I	ATGCAT	2 cut(s)	2571, 3027
MroXI	GAANNNNTTC	1 cut(s)	1715
MscI	TGGCCA	3 cut(s)	1902, 2103, 2526
MseI	TTAA	8 cut(s)	95, 810, 1389, 1506, 1514, 1614, 2024, 2988
MslI	CAYNNNNRTG	6 cut(s)	165, 986, 1559, 1677, 1950, 2087
Msp20I	TGGCCA	3 cut(s)	1902, 2103, 2526
MspA1I	CMGCKG	4 cut(s)	329, 468, 827, 1130
MspCI	CTTAAG	1 cut(s)	94
MspI	CCGG	4 cut(s)	588, 816, 1921, 2817
MspR9I	CCNGG	7 cut(s)	153, 193, 1585, 1964, 2117, 2233, 2818
Mva1269I	GAATGC	1 cut(s)	762
MvaI	CCWGG	6 cut(s)	153, 193, 1585, 1964, 2117, 2233
MvnI	CGCG	3 cut(s)	417, 1686, 1755
NarI	GGCGCC	1 cut(s)	1596
NciI	CCSGG	1 cut(s)	2818
NcoI	CCATGG	2 cut(s)	396, 1560
NdeI	CATATG	1 cut(s)	2434
NdeII	GATC	9 cut(s)	138, 452, 590, 1049, 1480, 1878, 1942, 2426, 2560
NheI	GCTAGC	1 cut(s)	746
NlaIV	GGNNCC	6 cut(s)	46, 1397, 1398, 1597, 2166, 2518
NsbI	TGCGCA	2 cut(s)	1341, 2676
NsiI	ATGCAT	2 cut(s)	2571, 3027
NspI	RCATGY	5 cut(s)	13, 2044, 2744, 2900, 2923
OliI	CACNNNNGTG	2 cut(s)	165, 986
PaeI	GCATGC	1 cut(s)	2900
PagI	TCATGA	2 cut(s)	1159, 1980
PasI	CCCWGGG	1 cut(s)	152
PauI	GCGCGC	1 cut(s)	415
PciI	ACATGT	2 cut(s)	2740, 2919
PctI	GAATGC	1 cut(s)	762
PdmI	GAANNNNTTC	1 cut(s)	1715
PfeI	GAWTC	7 cut(s)	106, 615, 650, 862, 1530, 1669, 3005
Pfl23II	CGTACG	1 cut(s)	1031
PflFI	GACNNNGTC	2 cut(s)	1754, 2699
PleI	GAGTC	4 cut(s)	95, 938, 1141, 2989
PluTI	GGCGCC	1 cut(s)	1599
PpsI	GAGTC	4 cut(s)	95, 938, 1141, 2989
PpuMI	RGGWCCY	1 cut(s)	2516
PscI	ACATGT	2 cut(s)	2740, 2919
PsiI	TTATAA	2 cut(s)	858, 2732
Psp124BI	GAGCTC	1 cut(s)	2460
Psp5II	RGGWCCY	1 cut(s)	2516
Psp6I	CCWGG	6 cut(s)	151, 191, 1583, 1962, 2115, 2231
PspEI	GGTNACC	2 cut(s)	431, 1966
PspGI	CCWGG	6 cut(s)	151, 191, 1583, 1962, 2115, 2231
PspLI	CGTACG	1 cut(s)	1031
PspN4I	GGNNCC	6 cut(s)	46, 1397, 1398, 1597, 2166, 2518
PspOMI	GGGCCC	1 cut(s)	1396
PspPI	GGNCC	5 cut(s)	195, 1265, 1396, 1397, 2516
PspPPI	RGGWCCY	1 cut(s)	2516
PsrI	GAACNNNNNNTAC	2 cut(s)	166, 198
PstI	CTGCAG	2 cut(s)	1408, 1915
PstNI	CAGNNNCTG	1 cut(s)	734
PsuI	RGATCY	2 cut(s)	590, 2560
PsyI	GACNNNGTC	2 cut(s)	1754, 2699
PteI	GCGCGC	1 cut(s)	415
PvuII	CAGCTG	1 cut(s)	827
RsaI	GTAC	9 cut(s)	14, 46, 347, 733, 1033, 1233, 1768, 2166, 2758
RsaNI	GTAC	9 cut(s)	13, 45, 346, 732, 1032, 1232, 1767, 2165, 2757
RseI	CAYNNNNRTG	6 cut(s)	165, 986, 1559, 1677, 1950, 2087
SacI	GAGCTC	1 cut(s)	2460
SaqAI	TTAA	8 cut(s)	95, 810, 1389, 1506, 1514, 1614, 2024, 2988
Sau3AI	GATC	9 cut(s)	138, 452, 590, 1049, 1480, 1878, 1942, 2426, 2560
Sau96I	GGNCC	5 cut(s)	195, 1265, 1396, 1397, 2516
SchI	GAGTC	4 cut(s)	96, 939, 1141, 2990
ScrFI	CCNGG	7 cut(s)	153, 193, 1585, 1964, 2117, 2233, 2818
SduI	GDGCHC	6 cut(s)	532, 1400, 1548, 2322, 2460, 2640
SexAI	ACCWGGT	1 cut(s)	1962
SfcI	CTRYAG	4 cut(s)	163, 795, 1404, 1911
SfoI	GGCGCC	1 cut(s)	1597
SinI	GGWCC	1 cut(s)	2516
SmiMI	CAYNNNNRTG	6 cut(s)	165, 986, 1559, 1677, 1950, 2087
SmlI	CTYRAG	2 cut(s)	94, 2639
SmoI	CTYRAG	2 cut(s)	94, 2639
SpeI	ACTAGT	1 cut(s)	443
SphI	GCATGC	1 cut(s)	2900
SsiI	CCGC	9 cut(s)	312, 315, 324, 327, 468, 1130, 1753, 2863, 3019
SspDI	GGCGCC	1 cut(s)	1595
SspMI	CTAG	7 cut(s)	186, 363, 444, 450, 747, 1074, 1257
SstI	GAGCTC	1 cut(s)	2460
StyD4I	CCNGG	7 cut(s)	151, 191, 1583, 1962, 2115, 2231, 2816
StyI	CCWWGG	5 cut(s)	396, 1560, 1573, 1813, 1888
TaiI	ACGT	2 cut(s)	206, 2535
TaqI	TCGA	3 cut(s)	27, 1180, 3003
TatI	WGTACW	3 cut(s)	345, 1231, 1766
TauI	GCSGC	4 cut(s)	314, 317, 329, 1133
TfiI	GAWTC	7 cut(s)	106, 615, 650, 862, 1530, 1669, 3005
Tru1I	TTAA	8 cut(s)	95, 810, 1389, 1506, 1514, 1614, 2024, 2988
Tru9I	TTAA	8 cut(s)	95, 810, 1389, 1506, 1514, 1614, 2024, 2988
TscAI	CASTG	9 cut(s)	172, 642, 913, 943, 1144, 1340, 1876, 2308, 2907
TspDTI	ATGAA	9 cut(s)	489, 534, 1313, 1644, 1661, 1724, 2162, 2187, 2615
TspGWI	ACGGA	1 cut(s)	2167
TspRI	CASTG	9 cut(s)	172, 642, 913, 943, 1144, 1340, 1876, 2308, 2907
Tth111I	GACNNNGTC	2 cut(s)	1754, 2699
Vha464I	CTTAAG	1 cut(s)	94
VneI	GTGCAC	1 cut(s)	2318
VpaK11BI	GGWCC	1 cut(s)	2516
XagI	CCTNNNNNAGG	1 cut(s)	2120
XapI	RAATTY	6 cut(s)	406, 496, 1461, 1473, 2444, 2953
XbaI	TCTAGA	2 cut(s)	362, 1256
XceI	RCATGY	5 cut(s)	13, 2044, 2744, 2900, 2923
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1790
XmiI	GTMKAC	1 cut(s)	175
XmnI	GAANNNNTTC	1 cut(s)	1715
XspI	CTAG	7 cut(s)	186, 363, 444, 450, 747, 1074, 1257
Zsp2I	ATGCAT	2 cut(s)	2571, 3027

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.