Rmu_sc0003582.1_g000006

U1-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003582.1
OG0016854
Physical Location & Seq
Reverse (-)
20060 .. 23395
3336 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1158 bp
atggttggccaacctccatataggggtatcggtgaagtgggtggtgaactattcagaggacatcaaggaaattttggctacagcggagctcacccatctttcattgggggatcacatggtcgaggtaggggtggttcttggcttttagtggaacatggtgtcccttcaacatcttctcatcctccccatcagacataccaatctccggtaacgctgacacctcagaagtcggaatctgcatcagcactgaaaacggaagttccaaactaccaaaaacctcaagttgctcaaaaaaccacggttacttggtgtgaagtttgtaatgcttcatgcgctaatttggacgttcttaaacagcaccaaaatggaaagcgacatcaaaggaacctgagaaaaatggaaaggttgaaaaacggtatcagaacagtggccaaattgcagggccaacagctttgcacttctaatacaaagcttgaagtgcctcatcagactcagtgtgaacaagacgatgaagagaaaaacacaacaaaggatataccatacgaacctgttggctatgaaaattcaagggaaactggaaaacaaaataagaaccccggacagcctgaaattccaccaggcgatgggtctgacaatgtgaagcgtggtaagaagcgcaagaaaacgaaaactccgaagcagtcagtcaaaccttccaaatgtaaagtcgtaattccgatagtttgtgacttgtgtaatgtcaagtgtgacaagcaggcttttttcgatcgccatctttcaggaaagaagcatgttgccaagtataaacaatttaaaggccatgaagctatgcatcgacccgtggggcttcaagttctatacccccctaacccattggctgaaactatattccaaccccaagaaggaagatatatacctccccatgtgtaccaagatatacaggtggaaacaagttcagatccccaatttcaacaaaatccaacctctgaaggatctgaatccattcttggatgtggaagctctagtaccattacaacagctctagaaaccaacatcacaacagaaccggaaatcagccaagaagctaccaatgaggtccaacatttgaatagtatttcagagactggtcaggggtccaatactttttcacaggactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_jaz zf-met

Protein Analysis

385

Amino Acids

42.5

Weight (kDa)

8.77

Isoelectric Point (pI)

42.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-met PF12874 103 - 126 4.5e-07 Zinc-finger of C2H2 type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016854)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g18930
prunus_persica Prupe.5G069800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0203321
rosa_laevigata RLG00000003535
rosa_multiflora Rmu_sc0002286.1_g000001 Rmu_sc0003582.1_g000006
rosa_roxburghii Rroxscaffold_3G00253880
rosa_rugosa Rorug07G0075500 Rorug07G0075600
rosa_samantha Rh7AG205200 Rh7BG204600 Rh7CG216400 Rh7DG211700
rosa_wichuraiana Rw7G017870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 623
AciI CCGC 1 cut(s) 84
AclWI GGATC 3 cut(s) 118, 953, 1000
AcoI YGGCCR 2 cut(s) 7, 429
AcsI RAATTY 3 cut(s) 70, 562, 609
AcuI CTGAAG 1 cut(s) 1008
AfaI GTAC 2 cut(s) 929, 1027
AfiI CCNNNNNNNGG 4 cut(s) 23, 205, 623, 902
AgsI TTSAA 7 cut(s) 168, 409, 476, 567, 851, 971, 1108
AjnI CCWGG 1 cut(s) 616
AjuI GAANNNNNNNTTGG 2 cut(s) 990, 1022
AloI GAACNNNNNNTCC 2 cut(s) 144, 176
AluBI AGCT 7 cut(s) 89, 451, 472, 827, 1020, 1040, 1085
AluI AGCT 7 cut(s) 89, 451, 472, 827, 1020, 1040, 1085
Alw21I GWGCWC 1 cut(s) 91
Alw26I GTCTC 1 cut(s) 1115
AlwI GGATC 3 cut(s) 118, 953, 1000
AlwNI CAGNNNCTG 1 cut(s) 1124
AoxI GGCC 4 cut(s) 7, 429, 442, 817
ApoI RAATTY 3 cut(s) 70, 562, 609
ArsI GACNNNNNNTTYG 2 cut(s) 690, 722
Asp700I GAANNNNTTC 1 cut(s) 1002
AspLEI GCGC 2 cut(s) 335, 657
AspS9I GGNCC 3 cut(s) 442, 1096, 1134
AsuC2I CCSGG 1 cut(s) 597
AsuHPI GGTGA 3 cut(s) 44, 56, 83
AvaII GGWCC 2 cut(s) 1096, 1134
BalI TGGCCA 2 cut(s) 9, 431
BanII GRGCYC 1 cut(s) 91
BarI GAAGNNNNNNTAC 2 cut(s) 1009, 1041
Bbv12I GWGCWC 1 cut(s) 91
BccI CCATC 4 cut(s) 103, 195, 617, 780
BciT130I CCWGG 1 cut(s) 618
BcnI CCSGG 1 cut(s) 597
BcoDI GTCTC 1 cut(s) 1115
BfaI CTAG 2 cut(s) 1023, 1043
BfmI CTRYAG 1 cut(s) 79
Bme1390I CCNGG 2 cut(s) 597, 618
Bme18I GGWCC 2 cut(s) 1096, 1134
BmgT120I GGNCC 3 cut(s) 442, 1096, 1134
BmiI GGNNCC 2 cut(s) 386, 1135
BmrFI CCNGG 2 cut(s) 597, 618
BmsI GCATC 2 cut(s) 248, 841
BpuEI CTTGAG 1 cut(s) 264
BpuMI CCSGG 1 cut(s) 597
BsaBI GATNNNNATC 2 cut(s) 771, 997
BsaJI CCNNGG 3 cut(s) 297, 595, 840
BsaWI WCCGGW 2 cut(s) 205, 1066
BsaXI ACNNNNNCTCC 2 cut(s) 655, 685
Bsc4I CCNNNNNNNGG 4 cut(s) 23, 205, 623, 902
Bse1I ACTGG 2 cut(s) 580, 1129
Bse8I GATNNNNATC 2 cut(s) 771, 997
BseBI CCWGG 1 cut(s) 618
BseDI CCNNGG 3 cut(s) 297, 595, 840
BseGI GGATG 2 cut(s) 178, 1016
BseJI GATNNNNATC 2 cut(s) 771, 997
BseLI CCNNNNNNNGG 4 cut(s) 23, 205, 623, 902
BseMII CTCAG 3 cut(s) 236, 380, 506
BseNI ACTGG 2 cut(s) 580, 1129
Bsh1285I CGRYCG 1 cut(s) 769
BshFI GGCC 4 cut(s) 9, 431, 444, 819
BsiEI CGRYCG 1 cut(s) 769
BsiHKAI GWGCWC 1 cut(s) 91
BsiSI CCGG 3 cut(s) 206, 597, 1067
BslFI GGGAC 1 cut(s) 146
BslI CCNNNNNNNGG 4 cut(s) 23, 205, 623, 902
BsmAI GTCTC 1 cut(s) 1115
BsmFI GGGAC 1 cut(s) 146
BsnI GGCC 4 cut(s) 9, 431, 444, 819
Bsp1286I GDGCHC 1 cut(s) 91
Bsp143I GATC 4 cut(s) 110, 766, 958, 992
BspACI CCGC 1 cut(s) 84
BspANI GGCC 4 cut(s) 9, 431, 444, 819
BspCNI CTCAG 3 cut(s) 235, 381, 505
BspLI GGNNCC 2 cut(s) 386, 1135
BspPI GGATC 3 cut(s) 118, 953, 1000
BsrI ACTGG 2 cut(s) 580, 1129
BssECI CCNNGG 3 cut(s) 297, 595, 840
BssMI GATC 4 cut(s) 110, 766, 958, 992
Bst2UI CCWGG 1 cut(s) 618
Bst4CI ACNGT 3 cut(s) 301, 416, 427
Bst6I CTCTTC 1 cut(s) 507
BstC8I GCNNGC 1 cut(s) 756
BstDEI CTNAG 3 cut(s) 222, 389, 492
BstDSI CCRYGG 2 cut(s) 297, 840
BstF5I GGATG 2 cut(s) 178, 1016
BstHHI GCGC 2 cut(s) 335, 657
BstKTI GATC 4 cut(s) 113, 769, 961, 995
BstMAI GTCTC 1 cut(s) 1115
BstMBI GATC 4 cut(s) 110, 766, 958, 992
BstMCI CGRYCG 1 cut(s) 769
BstMWI GCNNNNNNNGC 2 cut(s) 332, 478
BstNI CCWGG 1 cut(s) 618
BstNSI RCATGY 1 cut(s) 794
BstSCI CCNGG 2 cut(s) 595, 616
BstSFI CTRYAG 1 cut(s) 79
BstX2I RGATCY 2 cut(s) 958, 992
BstYI RGATCY 2 cut(s) 958, 992
BsuRI GGCC 4 cut(s) 9, 431, 444, 819
BtgI CCRYGG 2 cut(s) 297, 840
BtgZI GCGATG 1 cut(s) 636
BtsCI GGATG 2 cut(s) 178, 1016
BtsIMutI CAGTG 3 cut(s) 245, 432, 500
Cac8I GCNNGC 1 cut(s) 756
CaiI CAGNNNCTG 1 cut(s) 1124
CfoI GCGC 2 cut(s) 335, 657
Cfr13I GGNCC 3 cut(s) 442, 1096, 1134
Csp6I GTAC 2 cut(s) 928, 1026
CviAII CATG 6 cut(s) 116, 155, 330, 791, 821, 923
CviQI GTAC 2 cut(s) 928, 1026
DdeI CTNAG 3 cut(s) 222, 389, 492
DpnI GATC 4 cut(s) 112, 768, 960, 994
DpnII GATC 4 cut(s) 110, 766, 958, 992
DraI TTTAAA 1 cut(s) 814
EaeI YGGCCR 2 cut(s) 7, 429
Eam1104I CTCTTC 1 cut(s) 507
EarI CTCTTC 1 cut(s) 507
Ecl136II GAGCTC 1 cut(s) 89
Eco24I GRGCYC 1 cut(s) 91
Eco47I GGWCC 2 cut(s) 1096, 1134
Eco53kI GAGCTC 1 cut(s) 89
Eco57I CTGAAG 1 cut(s) 1008
EcoICRI GAGCTC 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 616
EcoT22I ATGCAT 1 cut(s) 834
EcoT38I GRGCYC 1 cut(s) 91
FaeI CATG 6 cut(s) 119, 158, 333, 794, 824, 926
FaqI GGGAC 1 cut(s) 146
FatI CATG 6 cut(s) 115, 154, 329, 790, 820, 922
FokI GGATG 2 cut(s) 165, 1023
FriOI GRGCYC 1 cut(s) 91
FspBI CTAG 2 cut(s) 1023, 1043
GlaI GCGC 2 cut(s) 334, 656
HaeIII GGCC 4 cut(s) 9, 431, 444, 819
HapII CCGG 3 cut(s) 206, 597, 1067
HhaI GCGC 2 cut(s) 335, 657
Hin1II CATG 6 cut(s) 119, 158, 333, 794, 824, 926
Hin6I GCGC 2 cut(s) 333, 655
HinP1I GCGC 2 cut(s) 333, 655
HindIII AAGCTT 1 cut(s) 470
HinfI GANTC 3 cut(s) 233, 490, 998
HpaII CCGG 3 cut(s) 206, 597, 1067
HphI GGTGA 3 cut(s) 44, 56, 83
Hpy166II GTNNAC 3 cut(s) 47, 500, 928
Hpy188III TCNNGA 2 cut(s) 780, 1043
Hpy8I GTNNAC 3 cut(s) 47, 500, 928
HpyAV CCTTC 4 cut(s) 174, 702, 896, 983
HpyCH4III ACNGT 3 cut(s) 301, 416, 427
HpyCH4IV ACGT 1 cut(s) 345
HpyCH4V TGCA 4 cut(s) 239, 439, 456, 832
HpyF10VI GCNNNNNNNGC 2 cut(s) 332, 478
HpyF3I CTNAG 3 cut(s) 222, 389, 492
HpySE526I ACGT 1 cut(s) 345
Hsp92II CATG 6 cut(s) 119, 158, 333, 794, 824, 926
HspAI GCGC 2 cut(s) 333, 655
Kzo9I GATC 4 cut(s) 110, 766, 958, 992
LmnI GCTCC 1 cut(s) 86
LweI GCATC 2 cut(s) 248, 841
MaeI CTAG 2 cut(s) 1023, 1043
MaeII ACGT 1 cut(s) 345
MaeIII GTNAC 4 cut(s) 208, 301, 725, 746
MalI GATC 4 cut(s) 112, 768, 960, 994
MboI GATC 4 cut(s) 110, 766, 958, 992
MboII GAAGA 3 cut(s) 165, 524, 918
MflI RGATCY 2 cut(s) 958, 992
MhlI GDGCHC 1 cut(s) 91
MlsI TGGCCA 2 cut(s) 9, 431
MluCI AATT 8 cut(s) 70, 337, 434, 562, 609, 711, 809, 965
MluNI TGGCCA 2 cut(s) 9, 431
MlyI GAGTC 1 cut(s) 484
MmeI TCCRAC 4 cut(s) 210, 916, 1004, 1123
Mox20I TGGCCA 2 cut(s) 9, 431
Mph1103I ATGCAT 1 cut(s) 834
MroXI GAANNNNTTC 1 cut(s) 1002
MscI TGGCCA 2 cut(s) 9, 431
MseI TTAA 2 cut(s) 351, 813
MslI CAYNNNNRTG 1 cut(s) 363
Msp20I TGGCCA 2 cut(s) 9, 431
MspA1I CMGCKG 1 cut(s) 84
MspI CCGG 3 cut(s) 206, 597, 1067
MspR9I CCNGG 2 cut(s) 597, 618
MvaI CCWGG 1 cut(s) 618
MwoI GCNNNNNNNGC 2 cut(s) 332, 478
NciI CCSGG 1 cut(s) 597
NdeII GATC 4 cut(s) 110, 766, 958, 992
NlaIII CATG 6 cut(s) 119, 158, 333, 794, 824, 926
NlaIV GGNNCC 2 cut(s) 386, 1135
NmuCI GTSAC 2 cut(s) 725, 746
NsiI ATGCAT 1 cut(s) 834
NspI RCATGY 1 cut(s) 794
PcsI WCGNNNNNNNCGW 1 cut(s) 671
PdmI GAANNNNTTC 1 cut(s) 1002
PfeI GAWTC 2 cut(s) 233, 998
PflMI CCANNNNNTGG 1 cut(s) 623
Ple19I CGATCG 1 cut(s) 769
PleI GAGTC 1 cut(s) 484
PpsI GAGTC 1 cut(s) 484
Psp124BI GAGCTC 1 cut(s) 91
Psp6I CCWGG 1 cut(s) 616
PspGI CCWGG 1 cut(s) 616
PspN4I GGNNCC 2 cut(s) 386, 1135
PspPI GGNCC 3 cut(s) 442, 1096, 1134
PsrI GAACNNNNNNTAC 2 cut(s) 118, 150
PstNI CAGNNNCTG 1 cut(s) 1124
PsuI RGATCY 2 cut(s) 958, 992
PvuI CGATCG 1 cut(s) 769
RsaI GTAC 2 cut(s) 929, 1027
RsaNI GTAC 2 cut(s) 928, 1026
RseI CAYNNNNRTG 1 cut(s) 363
SacI GAGCTC 1 cut(s) 91
SaqAI TTAA 2 cut(s) 351, 813
Sau3AI GATC 4 cut(s) 110, 766, 958, 992
Sau96I GGNCC 3 cut(s) 442, 1096, 1134
SchI GAGTC 1 cut(s) 484
ScrFI CCNGG 2 cut(s) 597, 618
SduI GDGCHC 1 cut(s) 91
SfaNI GCATC 2 cut(s) 248, 841
SfcI CTRYAG 1 cut(s) 79
SinI GGWCC 2 cut(s) 1096, 1134
SmiMI CAYNNNNRTG 1 cut(s) 363
SmlI CTYRAG 1 cut(s) 279
SmoI CTYRAG 1 cut(s) 279
Sse9I AATT 8 cut(s) 70, 337, 434, 562, 609, 711, 809, 965
SsiI CCGC 1 cut(s) 84
SspMI CTAG 2 cut(s) 1023, 1043
SstI GAGCTC 1 cut(s) 91
StyD4I CCNGG 2 cut(s) 595, 616
TaaI ACNGT 3 cut(s) 301, 416, 427
TaiI ACGT 1 cut(s) 348
TaqI TCGA 3 cut(s) 121, 765, 835
TasI AATT 8 cut(s) 70, 337, 434, 562, 609, 711, 809, 965
TfiI GAWTC 2 cut(s) 233, 998
Tru1I TTAA 2 cut(s) 351, 813
Tru9I TTAA 2 cut(s) 351, 813
TscAI CASTG 3 cut(s) 252, 432, 500
TseFI GTSAC 2 cut(s) 725, 746
Tsp45I GTSAC 2 cut(s) 725, 746
TspDTI ATGAA 5 cut(s) 91, 318, 525, 573, 837
TspGWI ACGGA 1 cut(s) 269
TspRI CASTG 3 cut(s) 252, 432, 500
Van91I CCANNNNNTGG 1 cut(s) 623
VpaK11BI GGWCC 2 cut(s) 1096, 1134
XapI RAATTY 3 cut(s) 70, 562, 609
XbaI TCTAGA 1 cut(s) 1042
XceI RCATGY 1 cut(s) 794
XmnI GAANNNNTTC 1 cut(s) 1002
XspI CTAG 2 cut(s) 1023, 1043
Zsp2I ATGCAT 1 cut(s) 834
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.