Rmu_sc0003615.1_g000002

Spermatogenesis-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003615.1
OG0012290
Physical Location & Seq
Forward (+)
5648 .. 8655
3008 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003615.1_g000002.1.cds

Sequence Viewer

Length: 1749 bp
atgcatttgcatttatttgaggtcactagcttgattgagtggtttatctttattttccctgagcctcctgctttacttttcttacagctttctcaaagttatgattcaaagtttggtgggtttggatctgccccaaagtttcctagaccagttgagattcagctgatgctttattactcaaagaagtcggaggaaactgtaaattctggcaaggccaatgaagttctgaaaaaggttctgtttaccttgcaatgcatggcaaaagggggaattcacgatcacgtcggaggtggcttccaccgatatagcgtggatgagtgctggcatgtaccgcactttgagaagatgttgtatgatcagggccaacttgctaatgtctacctagatgccttttctattgccaaagatgtattctatgcatctattgctcgggatgttcttgattatctgaggagagacatgattggaccagatggcgaaatatattcagcagaagatgctgacagtgctgaatctgaaggtgcatccagaaaaaaggaaggagcattctatgtttggtctagcaaagaggttgaagacatacttggagaagatgcaactctttttaagaaccactactatataaagccttccggtaactgtgacctttccagaataagtgatcctcataatgaattcaagaggaagaatgtgctgattgagagaaaaagtcattccgaggcatcaaaatttgccatgccggttgagaaatacctcgacattctgggtcagagcaggcgaaagctttttgaaataagatgtagtcgaccaagaccacatttggatgataaggtaattgtagcatggaatggactggccatctcagcctttgcaagagcctctaaaattctaaagaatgaacctaaggagatcaagttcaactttcctgttgttggttgtgatccgcgggagtacattgaagttgcagaaaaggcagcatcttttatcaggcgacacctttacaatgaacaatctcatcgactgcaacgcagctttaggaacggcccatctaaagcacctggatttttagatgattatgcttttcttatttcagggttattggatctttatgaatttggtggccaaaccagctggctagtttgggcaattgaactgcaagacacgcaggatgaaatatttcttgataaagagggaggcggctattttaataccccaggtgatgaccctagtgttctccttcgtgtgaaggaagatcatgatggggcagagccctctggaaattcggtttctgtgatcaaccttgtgagattggcatcaatactatctggcaacaggtctgagcattacagacaggaagctgaacatgttctggctgttttcgagacaagattaaacgacatggccatggcagtacctttaatgtgttgtgctgcagacatgctcactgttccttctcggaagcaagttgtcttggttggccagaaaactagagagtttgaaaacatgcttgccgcagctcatgcatcatatgataccaacaaaacggttattcacatagatccaactaattcggaagagttgcaattctgggaagacaaaaacagcgacattgcgctcatggcaaagaatcatgttgctgcagacaaagtggtcgctctcgtctgccaaaactttacttgcagtgcgcctgtcgctgaccctggatccctggaggctctgctctccaagaaatcagtcccttcagcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00240 ko01100 map00240 map01100
Pfam Domains
Protein Families
Thioredox_DsbH

Protein Analysis

582

Amino Acids

65.53

Weight (kDa)

5.68

Isoelectric Point (pI)

50.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012290)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03200 AT4G03200
fragaria_vesca FvH4_2g25030
malus_domestica MD03G1280600.v1.1
prunus_persica Prupe.8G255100_v2.0.a1
pyrus_communis pycom03g22230
rosa_chinensis RchiOBHm_Chr6g0293001
rosa_laevigata RLG00000011975
rosa_multiflora Rmu_sc0001788.1_g000005 Rmu_sc0003615.1_g000002 Rmu_sc0028741.1_g000001
rosa_roxburghii Rroxscaffold_7G00174480
rosa_rugosa Rorug06G0231900 Rorug06G0232000
rosa_samantha Rh6AG344700 Rh6BG352100 Rh6CG359300 Rh6DG344800
rosa_wichuraiana Rw6G030080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1649
AccI GTMKAC 2 cut(s) 378, 805
AccII CGCG 1 cut(s) 946
AciI CCGC 5 cut(s) 332, 944, 946, 1197, 1512
AclWI GGATC 7 cut(s) 133, 656, 935, 1110, 1553, 1698, 1711
AcoI YGGCCR 4 cut(s) 855, 1120, 1401, 1477
AcsI RAATTY 7 cut(s) 202, 270, 674, 728, 885, 1112, 1279
AcuI CTGAAG 2 cut(s) 537, 1725
AfaI GTAC 3 cut(s) 330, 953, 1413
AfiI CCNNNNNNNGG 1 cut(s) 932
AflIII ACRYGT 1 cut(s) 1363
AgsI TTSAA 8 cut(s) 108, 575, 679, 791, 919, 959, 1151, 1499
AjiI CACGTC 1 cut(s) 283
AjnI CCWGG 4 cut(s) 1057, 1213, 1699, 1707
AjuI GAANNNNNNNTTGG 4 cut(s) 395, 427, 567, 599
AloI GAACNNNNNNTCC 2 cut(s) 899, 931
AluBI AGCT 9 cut(s) 30, 88, 163, 784, 1032, 1131, 1358, 1517, 1745
AluI AGCT 9 cut(s) 30, 88, 163, 784, 1032, 1131, 1358, 1517, 1745
Alw26I GTCTC 2 cut(s) 450, 1376
AlwI GGATC 7 cut(s) 133, 656, 935, 1110, 1553, 1698, 1711
Ama87I CYCGRG 1 cut(s) 429
AoxI GGCC 7 cut(s) 213, 361, 855, 1042, 1120, 1401, 1477
ApeKI GCWGC 5 cut(s) 974, 1029, 1430, 1514, 1637
ApoI RAATTY 7 cut(s) 202, 270, 674, 728, 885, 1112, 1279
Asp700I GAANNNNTTC 2 cut(s) 1176, 1365
AspLEI GCGC 2 cut(s) 1615, 1687
AspS9I GGNCC 3 cut(s) 361, 467, 1043
AsuHPI GGTGA 1 cut(s) 1229
AvaI CYCGRG 1 cut(s) 429
AvaII GGWCC 1 cut(s) 467
AxyI CCTNAGG 1 cut(s) 903
BalI TGGCCA 4 cut(s) 857, 1122, 1403, 1479
BamHI GGATCC 1 cut(s) 1703
BanII GRGCYC 1 cut(s) 1272
BbsI GAAGAC 2 cut(s) 582, 1599
BbvI GCAGC 5 cut(s) 986, 1041, 1417, 1526, 1624
BccI CCATC 4 cut(s) 467, 866, 1054, 1253
BceAI ACGGC 1 cut(s) 1057
BciT130I CCWGG 4 cut(s) 1059, 1215, 1701, 1709
BclI TGATCA 2 cut(s) 355, 1293
BcoDI GTCTC 2 cut(s) 450, 1376
BfaI CTAG 7 cut(s) 27, 144, 383, 561, 1136, 1227, 1488
BfmI CTRYAG 2 cut(s) 1431, 1638
BisI GCNGC 7 cut(s) 975, 1030, 1198, 1431, 1512, 1515, 1638
BlsI GCNGC 7 cut(s) 976, 1031, 1199, 1432, 1513, 1516, 1639
Bme1390I CCNGG 4 cut(s) 1059, 1215, 1701, 1709
Bme18I GGWCC 1 cut(s) 467
BmeT110I CYCGRG 1 cut(s) 429
BmgBI CACGTC 1 cut(s) 283
BmgT120I GGNCC 3 cut(s) 361, 467, 1043
BmiI GGNNCC 1 cut(s) 1705
BmrFI CCNGG 4 cut(s) 1059, 1215, 1701, 1709
BpiI GAAGAC 2 cut(s) 582, 1599
BpmI CTGGAG 1 cut(s) 1730
Bpu10I CCTNAGC 1 cut(s) 60
BsaBI GATNNNNATC 1 cut(s) 1312
BsaJI CCNNGG 6 cut(s) 717, 944, 1213, 1404, 1699, 1707
BsaWI WCCGGW 1 cut(s) 632
BsaXI ACNNNNNCTCC 2 cut(s) 899, 929
Bsc4I CCNNNNNNNGG 1 cut(s) 932
Bse118I RCCGGY 1 cut(s) 739
Bse1I ACTGG 2 cut(s) 149, 858
Bse21I CCTNAGG 1 cut(s) 903
Bse3DI GCAATG 2 cut(s) 257, 1608
Bse8I GATNNNNATC 1 cut(s) 1312
BseBI CCWGG 4 cut(s) 1059, 1215, 1701, 1709
BseDI CCNNGG 6 cut(s) 717, 944, 1213, 1404, 1699, 1707
BseGI GGATG 5 cut(s) 319, 439, 524, 829, 1174
BseJI GATNNNNATC 1 cut(s) 1312
BseLI CCNNNNNNNGG 1 cut(s) 932
BseMI GCAATG 2 cut(s) 257, 1608
BseMII CTCAG 4 cut(s) 51, 440, 876, 1329
BseNI ACTGG 2 cut(s) 149, 858
BseRI GAGGAG 1 cut(s) 466
BseXI GCAGC 5 cut(s) 986, 1041, 1417, 1526, 1624
Bsh1236I CGCG 1 cut(s) 946
BshFI GGCC 7 cut(s) 215, 363, 857, 1044, 1122, 1403, 1479
BsiHKCI CYCGRG 1 cut(s) 429
BsiSI CCGG 2 cut(s) 633, 740
BslFI GGGAC 1 cut(s) 1721
BslI CCNNNNNNNGG 1 cut(s) 932
BsmAI GTCTC 2 cut(s) 450, 1376
BsmFI GGGAC 1 cut(s) 1721
BsmI GAATGC 1 cut(s) 545
BsnI GGCC 7 cut(s) 215, 363, 857, 1044, 1122, 1403, 1479
BsoBI CYCGRG 1 cut(s) 429
Bsp1286I GDGCHC 1 cut(s) 1272
Bsp19I CCATGG 1 cut(s) 1404
BspACI CCGC 5 cut(s) 332, 944, 946, 1197, 1512
BspANI GGCC 7 cut(s) 215, 363, 857, 1044, 1122, 1403, 1479
BspCNI CTCAG 4 cut(s) 52, 441, 875, 1330
BspFNI CGCG 1 cut(s) 946
BspHI TCATGA 1 cut(s) 1255
BspLI GGNNCC 1 cut(s) 1705
BspMAI CTGCAG 2 cut(s) 1435, 1642
BspPI GGATC 7 cut(s) 133, 656, 935, 1110, 1553, 1698, 1711
BsrDI GCAATG 2 cut(s) 257, 1608
BsrFI RCCGGY 1 cut(s) 739
BsrI ACTGG 2 cut(s) 149, 858
BssAI RCCGGY 1 cut(s) 739
BssECI CCNNGG 6 cut(s) 717, 944, 1213, 1404, 1699, 1707
BssT1I CCWWGG 1 cut(s) 1404
Bst2UI CCWGG 4 cut(s) 1059, 1215, 1701, 1709
Bst4CI ACNGT 5 cut(s) 199, 506, 641, 1447, 1546
Bst6I CTCTTC 1 cut(s) 1569
BstAPI GCANNNNNTGC 3 cut(s) 425, 497, 1520
BstC8I GCNNGC 4 cut(s) 323, 776, 1133, 1509
BstDEI CTNAG 5 cut(s) 60, 449, 862, 903, 1338
BstDSI CCRYGG 2 cut(s) 944, 1404
BstF5I GGATG 5 cut(s) 319, 439, 524, 829, 1174
BstFNI CGCG 1 cut(s) 946
BstHHI GCGC 2 cut(s) 1615, 1687
BstMAI GTCTC 2 cut(s) 450, 1376
BstNI CCWGG 4 cut(s) 1059, 1215, 1701, 1709
BstNSI RCATGY 4 cut(s) 329, 1367, 1441, 1507
BstSCI CCNGG 4 cut(s) 1057, 1213, 1699, 1707
BstSFI CTRYAG 2 cut(s) 1431, 1638
BstUI CGCG 1 cut(s) 946
BstV1I GCAGC 5 cut(s) 986, 1041, 1417, 1526, 1624
BstV2I GAAGAC 2 cut(s) 582, 1599
BstX2I RGATCY 4 cut(s) 125, 1102, 1558, 1703
BstYI RGATCY 4 cut(s) 125, 1102, 1558, 1703
Bsu36I CCTNAGG 1 cut(s) 903
BsuRI GGCC 7 cut(s) 215, 363, 857, 1044, 1122, 1403, 1479
BtgI CCRYGG 2 cut(s) 944, 1404
BtrI CACGTC 1 cut(s) 283
BtsCI GGATG 5 cut(s) 319, 439, 524, 829, 1174
BtsI GCAGTG 1 cut(s) 1687
BtsIMutI CAGTG 3 cut(s) 511, 1443, 1687
Cac8I GCNNGC 4 cut(s) 323, 776, 1133, 1509
CciI TCATGA 1 cut(s) 1255
CfoI GCGC 2 cut(s) 1615, 1687
Cfr10I RCCGGY 1 cut(s) 739
Cfr13I GGNCC 3 cut(s) 361, 467, 1043
Cfr42I CCGCGG 1 cut(s) 947
Csp6I GTAC 3 cut(s) 329, 952, 1412
CviQI GTAC 3 cut(s) 329, 952, 1412
DdeI CTNAG 5 cut(s) 60, 449, 862, 903, 1338
DrdI GACNNNNNNGTC 1 cut(s) 1649
DseDI GACNNNNNNGTC 1 cut(s) 1649
EaeI YGGCCR 4 cut(s) 855, 1120, 1401, 1477
Eam1104I CTCTTC 1 cut(s) 1569
EarI CTCTTC 1 cut(s) 1569
Eco130I CCWWGG 1 cut(s) 1404
Eco24I GRGCYC 1 cut(s) 1272
Eco47I GGWCC 1 cut(s) 467
Eco57I CTGAAG 2 cut(s) 537, 1725
Eco81I CCTNAGG 1 cut(s) 903
Eco88I CYCGRG 1 cut(s) 429
EcoRI GAATTC 2 cut(s) 270, 674
EcoRII CCWGG 4 cut(s) 1057, 1213, 1699, 1707
EcoT14I CCWWGG 1 cut(s) 1404
EcoT22I ATGCAT 4 cut(s) 6, 257, 421, 1525
EcoT38I GRGCYC 1 cut(s) 1272
ErhI CCWWGG 1 cut(s) 1404
FalI AAGNNNNNCTT 4 cut(s) 567, 599, 905, 937
FaqI GGGAC 1 cut(s) 1721
FauI CCCGC 1 cut(s) 939
FauNDI CATATG 1 cut(s) 1528
FbaI TGATCA 2 cut(s) 355, 1293
FblI GTMKAC 2 cut(s) 378, 805
Fnu4HI GCNGC 7 cut(s) 975, 1030, 1198, 1431, 1512, 1515, 1638
FokI GGATG 5 cut(s) 326, 446, 511, 836, 1181
FriOI GRGCYC 1 cut(s) 1272
Fsp4HI GCNGC 7 cut(s) 975, 1030, 1198, 1431, 1512, 1515, 1638
FspBI CTAG 7 cut(s) 27, 144, 383, 561, 1136, 1227, 1488
GlaI GCGC 2 cut(s) 1614, 1686
GluI GCNGC 7 cut(s) 975, 1030, 1198, 1431, 1512, 1515, 1638
GsuI CTGGAG 1 cut(s) 1730
HaeIII GGCC 7 cut(s) 215, 363, 857, 1044, 1122, 1403, 1479
HapII CCGG 2 cut(s) 633, 740
HhaI GCGC 2 cut(s) 1615, 1687
Hin6I GCGC 2 cut(s) 1613, 1685
HinP1I GCGC 2 cut(s) 1613, 1685
HincII GTYRAC 1 cut(s) 806
HindII GTYRAC 1 cut(s) 806
HindIII AAGCTT 1 cut(s) 782
HinfI GANTC 4 cut(s) 104, 157, 512, 1627
HpaII CCGG 2 cut(s) 633, 740
HphI GGTGA 1 cut(s) 1229
Hpy166II GTNNAC 3 cut(s) 243, 379, 806
Hpy8I GTNNAC 3 cut(s) 243, 379, 806
Hpy99I CGWCG 1 cut(s) 287
HpyAV CCTTC 7 cut(s) 512, 533, 639, 1240, 1247, 1461, 1749
HpyCH4III ACNGT 5 cut(s) 199, 506, 641, 1447, 1546
HpyCH4IV ACGT 1 cut(s) 282
HpyF3I CTNAG 5 cut(s) 60, 449, 862, 903, 1338
HpySE526I ACGT 1 cut(s) 282
HspAI GCGC 2 cut(s) 1613, 1685
Ksp22I TGATCA 2 cut(s) 355, 1293
KspI CCGCGG 1 cut(s) 947
LmnI GCTCC 1 cut(s) 542
Lsp1109I GCAGC 5 cut(s) 986, 1041, 1417, 1526, 1624
MaeI CTAG 7 cut(s) 27, 144, 383, 561, 1136, 1227, 1488
MaeII ACGT 1 cut(s) 282
MaeIII GTNAC 3 cut(s) 22, 635, 641
MboII GAAGA 8 cut(s) 355, 506, 587, 602, 697, 1262, 1586, 1604
MfeI CAATTG 1 cut(s) 1146
MflI RGATCY 4 cut(s) 125, 1102, 1558, 1703
MhlI GDGCHC 1 cut(s) 1272
MlsI TGGCCA 4 cut(s) 857, 1122, 1403, 1479
MluNI TGGCCA 4 cut(s) 857, 1122, 1403, 1479
MmeI TCCRAC 3 cut(s) 168, 265, 1586
Mox20I TGGCCA 4 cut(s) 857, 1122, 1403, 1479
Mph1103I ATGCAT 4 cut(s) 6, 257, 421, 1525
MroXI GAANNNNTTC 2 cut(s) 1176, 1365
MscI TGGCCA 4 cut(s) 857, 1122, 1403, 1479
MseI TTAA 4 cut(s) 606, 1206, 1391, 1418
MslI CAYNNNNRTG 2 cut(s) 822, 1403
Msp20I TGGCCA 4 cut(s) 857, 1122, 1403, 1479
MspA1I CMGCKG 3 cut(s) 163, 946, 1131
MspI CCGG 2 cut(s) 633, 740
MspR9I CCNGG 4 cut(s) 1059, 1215, 1701, 1709
MunI CAATTG 1 cut(s) 1146
Mva1269I GAATGC 1 cut(s) 545
MvaI CCWGG 4 cut(s) 1059, 1215, 1701, 1709
MvnI CGCG 1 cut(s) 946
NcoI CCATGG 1 cut(s) 1404
NdeI CATATG 1 cut(s) 1528
NlaIV GGNNCC 1 cut(s) 1705
NmuCI GTSAC 2 cut(s) 22, 641
NsiI ATGCAT 4 cut(s) 6, 257, 421, 1525
NspI RCATGY 4 cut(s) 329, 1367, 1441, 1507
PagI TCATGA 1 cut(s) 1255
PciI ACATGT 1 cut(s) 1363
PctI GAATGC 1 cut(s) 545
PdmI GAANNNNTTC 2 cut(s) 1176, 1365
PfeI GAWTC 4 cut(s) 104, 157, 512, 1627
PkrI GCNGC 7 cut(s) 976, 1031, 1199, 1432, 1513, 1516, 1639
PscI ACATGT 1 cut(s) 1363
Psp6I CCWGG 4 cut(s) 1057, 1213, 1699, 1707
PspGI CCWGG 4 cut(s) 1057, 1213, 1699, 1707
PspN4I GGNNCC 1 cut(s) 1705
PspPI GGNCC 3 cut(s) 361, 467, 1043
PstI CTGCAG 2 cut(s) 1435, 1642
PsuI RGATCY 4 cut(s) 125, 1102, 1558, 1703
PvuII CAGCTG 2 cut(s) 163, 1131
RsaI GTAC 3 cut(s) 330, 953, 1413
RsaNI GTAC 3 cut(s) 329, 952, 1412
RseI CAYNNNNRTG 2 cut(s) 822, 1403
SacII CCGCGG 1 cut(s) 947
SalI GTCGAC 1 cut(s) 804
SaqAI TTAA 4 cut(s) 606, 1206, 1391, 1418
SatI GCNGC 7 cut(s) 975, 1030, 1198, 1431, 1512, 1515, 1638
Sau96I GGNCC 3 cut(s) 361, 467, 1043
ScrFI CCNGG 4 cut(s) 1059, 1215, 1701, 1709
SduI GDGCHC 1 cut(s) 1272
SfcI CTRYAG 2 cut(s) 1431, 1638
Sfr303I CCGCGG 1 cut(s) 947
SgrBI CCGCGG 1 cut(s) 947
SinI GGWCC 1 cut(s) 467
SmiMI CAYNNNNRTG 2 cut(s) 822, 1403
SsiI CCGC 5 cut(s) 332, 944, 946, 1197, 1512
SspI AATATT 1 cut(s) 1176
SspMI CTAG 7 cut(s) 27, 144, 383, 561, 1136, 1227, 1488
StyD4I CCNGG 4 cut(s) 1057, 1213, 1699, 1707
StyI CCWWGG 1 cut(s) 1404
TaaI ACNGT 5 cut(s) 199, 506, 641, 1447, 1546
TaiI ACGT 1 cut(s) 285
TaqI TCGA 4 cut(s) 756, 805, 1018, 1380
TatI WGTACW 1 cut(s) 951
TauI GCSGC 2 cut(s) 1200, 1514
TfiI GAWTC 4 cut(s) 104, 157, 512, 1627
Tru1I TTAA 4 cut(s) 606, 1206, 1391, 1418
Tru9I TTAA 4 cut(s) 606, 1206, 1391, 1418
TscAI CASTG 3 cut(s) 511, 1450, 1687
TseFI GTSAC 2 cut(s) 22, 641
TseI GCWGC 5 cut(s) 974, 1029, 1430, 1514, 1637
Tsp45I GTSAC 2 cut(s) 22, 641
TspDTI ATGAA 6 cut(s) 234, 687, 912, 1020, 1125, 1185
TspRI CASTG 3 cut(s) 511, 1450, 1687
VpaK11BI GGWCC 1 cut(s) 467
XapI RAATTY 7 cut(s) 202, 270, 674, 728, 885, 1112, 1279
XceI RCATGY 4 cut(s) 329, 1367, 1441, 1507
XmiI GTMKAC 2 cut(s) 378, 805
XmnI GAANNNNTTC 2 cut(s) 1176, 1365
XspI CTAG 7 cut(s) 27, 144, 383, 561, 1136, 1227, 1488
Zsp2I ATGCAT 4 cut(s) 6, 257, 421, 1525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.