Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0012290

Physical Location & Seq

Genomic Coordinates Forward (+)

37285574 .. 37288198

Gene Structure 2625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0231900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGTCTTGCTTAGTCCCCATAATGCAGCATCCAGAGGCGCTCAACAAGTCACTAATTGAGAACAGTGCTATCACGCTTGGGAGGCTTGCATGTGTTTGTCCGGAGCTTGTGGCTCCGCATATGGAGCATTTCATGCAGCCATGGTGCATTGCTTTGTCAATGATACGTGATGATATAGAAAAGGAGGATGCATTCCGAGGTCTATGCGCATTGGTTAGAACAAATCCATCCGGAGCATTGAGTTCACTCGTATATATGTGCAATGCTATTGCCAGTTGGCATGAAATAAGGAGTGAAGAGCTACATAATGCAGTTTGCCAGGTGTTGCACGGTTATAAGCAGATGCTTGTGAATGGAGCGTGGGAACAGTGTATGTCTGCTTTGGAGCCACAAGTCAAGAACAAGCTATCAAAATACCAAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

Thioredox_DsbH

Protein Analysis

141

Amino Acids

15.83

Weight (kDa)

6.04

Isoelectric Point (pI)

54.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03200 AT4G03200
fragaria_vesca	FvH4_2g25030
malus_domestica	MD03G1280600.v1.1
prunus_persica	Prupe.8G255100_v2.0.a1
pyrus_communis	pycom03g22230
rosa_chinensis	RchiOBHm_Chr6g0293001
rosa_laevigata	RLG00000011975
rosa_multiflora	Rmu_sc0001788.1_g000005 Rmu_sc0003615.1_g000002 Rmu_sc0028741.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174480
rosa_rugosa	Rorug06G0231900 Rorug06G0232000
rosa_samantha	Rh6AG344700 Rh6BG352100 Rh6CG359300 Rh6DG344800
rosa_wichuraiana	Rw6G030080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	336
Acc16I	TGCGCA	1 cut(s)	208
AccIII	TCCGGA	2 cut(s)	100, 230
AciI	CCGC	1 cut(s)	116
AjnI	CCWGG	1 cut(s)	318
AluBI	AGCT	3 cut(s)	106, 301, 406
AluI	AGCT	3 cut(s)	106, 301, 406
Aor13HI	TCCGGA	2 cut(s)	100, 230
ApeKI	GCWGC	2 cut(s)	25, 136
AspLEI	GCGC	2 cut(s)	40, 209
BbvI	GCAGC	2 cut(s)	37, 148
BccI	CCATC	1 cut(s)	235
BcgI	CGANNNNNNTGC	2 cut(s)	186, 220
BciT130I	CCWGG	1 cut(s)	320
BfoI	RGCGCY	1 cut(s)	41
BisI	GCNGC	2 cut(s)	26, 137
BlsI	GCNGC	2 cut(s)	27, 138
Bme1390I	CCNGG	1 cut(s)	320
BmiI	GGNNCC	2 cut(s)	114, 387
BmrFI	CCNGG	1 cut(s)	320
BmsI	GCATC	3 cut(s)	37, 178, 333
BsaAI	YACGTR	1 cut(s)	167
BsaJI	CCNNGG	2 cut(s)	140, 196
BsaWI	WCCGGW	2 cut(s)	100, 230
Bse1I	ACTGG	1 cut(s)	273
Bse3DI	GCAATG	2 cut(s)	147, 268
BseAI	TCCGGA	2 cut(s)	100, 230
BseBI	CCWGG	1 cut(s)	320
BseDI	CCNNGG	2 cut(s)	140, 196
BseGI	GGATG	3 cut(s)	28, 193, 227
BseMI	GCAATG	2 cut(s)	147, 268
BseNI	ACTGG	1 cut(s)	273
BseXI	GCAGC	2 cut(s)	37, 148
BsiSI	CCGG	2 cut(s)	101, 231
BsmI	GAATGC	1 cut(s)	191
Bsp13I	TCCGGA	2 cut(s)	100, 230
Bsp19I	CCATGG	1 cut(s)	140
BspACI	CCGC	1 cut(s)	116
BspEI	TCCGGA	2 cut(s)	100, 230
BspLI	GGNNCC	2 cut(s)	114, 387
BspQI	GCTCTTC	1 cut(s)	291
BsrDI	GCAATG	2 cut(s)	147, 268
BsrI	ACTGG	1 cut(s)	273
BssECI	CCNNGG	2 cut(s)	140, 196
BssT1I	CCWWGG	1 cut(s)	140
Bst2UI	CCWGG	1 cut(s)	320
Bst4CI	ACNGT	3 cut(s)	65, 332, 369
Bst6I	CTCTTC	1 cut(s)	291
BstAPI	GCANNNNNTGC	1 cut(s)	133
BstBAI	YACGTR	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	1 cut(s)	10
BstDSI	CCRYGG	1 cut(s)	140
BstF5I	GGATG	3 cut(s)	28, 193, 227
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	2 cut(s)	40, 209
BstMWI	GCNNNNNNNGC	3 cut(s)	82, 124, 133
BstNI	CCWGG	1 cut(s)	320
BstNSI	RCATGY	1 cut(s)	93
BstSCI	CCNGG	1 cut(s)	318
BstV1I	GCAGC	2 cut(s)	37, 148
BtgI	CCRYGG	1 cut(s)	140
BtsCI	GGATG	3 cut(s)	28, 193, 227
BtsIMutI	CAGTG	2 cut(s)	70, 374
Cac8I	GCNNGC	1 cut(s)	87
CfoI	GCGC	2 cut(s)	40, 209
CviAII	CATG	4 cut(s)	90, 133, 141, 281
CviJI	RGCY	7 cut(s)	85, 106, 113, 139, 301, 388, 406
CviKI_1	RGCY	7 cut(s)	85, 106, 113, 139, 301, 388, 406
DdeI	CTNAG	1 cut(s)	10
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Eco130I	CCWWGG	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	318
EcoT14I	CCWWGG	1 cut(s)	140
EcoT22I	ATGCAT	1 cut(s)	193
ErhI	CCWWGG	1 cut(s)	140
FaeI	CATG	4 cut(s)	93, 136, 144, 284
FatI	CATG	4 cut(s)	89, 132, 140, 280
FauNDI	CATATG	1 cut(s)	120
Fnu4HI	GCNGC	2 cut(s)	26, 137
FokI	GGATG	3 cut(s)	15, 200, 214
Fsp4HI	GCNGC	2 cut(s)	26, 137
FspAI	RTGCGCAY	1 cut(s)	208
FspI	TGCGCA	1 cut(s)	208
GlaI	GCGC	2 cut(s)	39, 208
GluI	GCNGC	2 cut(s)	26, 137
HaeII	RGCGCY	1 cut(s)	41
HapII	CCGG	2 cut(s)	101, 231
HhaI	GCGC	2 cut(s)	40, 209
Hin1II	CATG	4 cut(s)	93, 136, 144, 284
Hin6I	GCGC	2 cut(s)	38, 207
HinP1I	GCGC	2 cut(s)	38, 207
HpaII	CCGG	2 cut(s)	101, 231
Hpy166II	GTNNAC	1 cut(s)	245
Hpy188I	TCNGA	1 cut(s)	197
Hpy188III	TCNNGA	4 cut(s)	32, 101, 231, 397
Hpy8I	GTNNAC	1 cut(s)	245
HpyCH4III	ACNGT	3 cut(s)	65, 332, 369
HpyCH4IV	ACGT	1 cut(s)	166
HpyCH4V	TGCA	8 cut(s)	25, 89, 136, 147, 191, 261, 311, 328
HpyF10VI	GCNNNNNNNGC	3 cut(s)	82, 124, 133
HpyF3I	CTNAG	1 cut(s)	10
HpySE526I	ACGT	1 cut(s)	166
Hsp92II	CATG	4 cut(s)	93, 136, 144, 284
HspAI	GCGC	2 cut(s)	38, 207
Kpn2I	TCCGGA	2 cut(s)	100, 230
LguI	GCTCTTC	1 cut(s)	291
LmnI	GCTCC	6 cut(s)	103, 118, 124, 233, 356, 385
LpnPI	CCDG	6 cut(s)	45, 114, 244, 286, 305, 332
Lsp1109I	GCAGC	2 cut(s)	37, 148
LweI	GCATC	3 cut(s)	37, 178, 333
MaeII	ACGT	1 cut(s)	166
MaeIII	GTNAC	1 cut(s)	48
MboII	GAAGA	1 cut(s)	308
MluCI	AATT	1 cut(s)	54
MnlI	CCTC	4 cut(s)	28, 75, 178, 191
Mph1103I	ATGCAT	1 cut(s)	193
MroI	TCCGGA	2 cut(s)	100, 230
MspI	CCGG	2 cut(s)	101, 231
MspR9I	CCNGG	1 cut(s)	320
Mva1269I	GAATGC	1 cut(s)	191
MvaI	CCWGG	1 cut(s)	320
MwoI	GCNNNNNNNGC	3 cut(s)	82, 124, 133
NcoI	CCATGG	1 cut(s)	140
NdeI	CATATG	1 cut(s)	120
NlaIII	CATG	4 cut(s)	93, 136, 144, 284
NlaIV	GGNNCC	2 cut(s)	114, 387
NmuCI	GTSAC	1 cut(s)	48
NsbI	TGCGCA	1 cut(s)	208
NsiI	ATGCAT	1 cut(s)	193
NspI	RCATGY	1 cut(s)	93
PciSI	GCTCTTC	1 cut(s)	291
PctI	GAATGC	1 cut(s)	191
PkrI	GCNGC	2 cut(s)	27, 138
Ppu21I	YACGTR	1 cut(s)	167
PsiI	TTATAA	1 cut(s)	336
Psp6I	CCWGG	1 cut(s)	318
PspGI	CCWGG	1 cut(s)	318
PspN4I	GGNNCC	2 cut(s)	114, 387
SapI	GCTCTTC	1 cut(s)	291
SatI	GCNGC	2 cut(s)	26, 137
ScrFI	CCNGG	1 cut(s)	320
SetI	ASST	6 cut(s)	108, 169, 202, 303, 324, 408
SfaNI	GCATC	3 cut(s)	37, 178, 333
Sse9I	AATT	1 cut(s)	54
SsiI	CCGC	1 cut(s)	116
StyD4I	CCNGG	1 cut(s)	318
StyI	CCWWGG	1 cut(s)	140
TaaI	ACNGT	3 cut(s)	65, 332, 369
TaiI	ACGT	1 cut(s)	169
TasI	AATT	1 cut(s)	54
TscAI	CASTG	2 cut(s)	70, 374
TseFI	GTSAC	1 cut(s)	48
TseI	GCWGC	2 cut(s)	25, 136
Tsp45I	GTSAC	1 cut(s)	48
TspDTI	ATGAA	2 cut(s)	121, 297
TspRI	CASTG	2 cut(s)	70, 374
XceI	RCATGY	1 cut(s)	93
Zsp2I	ATGCAT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.