Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003706.1

Orthogroup ID

OG0015722

Physical Location & Seq

Genomic Coordinates Forward (+)

7450 .. 8333

Gene Structure 884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atgcgcgagtggaaaattttggagaatggccttccggacatctacgtgcgcgggtatgagacacgcgtcgacctcatgagggcagtgattgttggagcagccggcacaccttaccacgaaggcctctttttcttcgacatcaagttcccgcccgattatccgaaccacccgccacaagtccattaccggtcgcacaggttgaataaacccgtacataggtccgaaaggactagggctgggcatttaagcccgaaaaccgaaccttcctcacggccaccatctcaccgatctcatcgccctgtcttcactcgtcccttacctttcgctttggcccgctcagatttccagaatttcttcctctctccaattggatcgtcctcttccatggctcaagcggttcgctcttcctctcctgcccgcggtggtcctttgcttggataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

146

Amino Acids

16.5

Weight (kDa)

10.64

Isoelectric Point (pI)

63.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	16 - 68	2e-11	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015722)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g18330 pycom10g26420 pycom13g04680 pycom14g14050
rosa_laevigata	RLG00000024517 RLG00000030191
rosa_multiflora	Rmu_sc0003130.1_g000014 Rmu_sc0003706.1_g000002 Rmu_sc0004283.1_g000045 Rmu_sc0007734.1_g000014
rosa_roxburghii	Rroxscaffold_2G00083090 Rroxscaffold_6G00394300
rosa_rugosa	Rorug01G0156200.1 Rorug01G0407800
rosa_samantha	Rh4CG277800 Rh4DG262800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	336
AccI	GTMKAC	1 cut(s)	69
AccII	CGCG	4 cut(s)	6, 51, 66, 420
AccIII	TCCGGA	1 cut(s)	34
AciI	CCGC	7 cut(s)	51, 149, 170, 334, 395, 418, 420
AclWI	GGATC	1 cut(s)	379
AcoI	YGGCCR	1 cut(s)	272
AcsI	RAATTY	2 cut(s)	15, 349
AfaI	GTAC	1 cut(s)	213
AfiI	CCNNNNNNNGG	4 cut(s)	79, 216, 419, 434
AflIII	ACRYGT	1 cut(s)	64
AgeI	ACCGGT	1 cut(s)	186
AgsI	TTSAA	1 cut(s)	202
Alw26I	GTCTC	1 cut(s)	53
AlwI	GGATC	1 cut(s)	379
Aor13HI	TCCGGA	1 cut(s)	34
AoxI	GGCC	4 cut(s)	28, 121, 272, 330
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	2 cut(s)	15, 349
AsiGI	ACCGGT	1 cut(s)	186
Asp700I	GAANNNNTTC	1 cut(s)	353
AspLEI	GCGC	2 cut(s)	6, 51
AspS9I	GGNCC	3 cut(s)	219, 331, 425
AsuHPI	GGTGA	1 cut(s)	275
AvaII	GGWCC	2 cut(s)	219, 425
BbsI	GAAGAC	1 cut(s)	295
BbvI	GCAGC	1 cut(s)	110
BccI	CCATC	1 cut(s)	286
BceAI	ACGGC	1 cut(s)	287
BcoDI	GTCTC	1 cut(s)	53
BfaI	CTAG	1 cut(s)	231
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
Bme18I	GGWCC	2 cut(s)	219, 425
BmgT120I	GGNCC	3 cut(s)	219, 331, 425
BoxI	GACNNNNGTC	1 cut(s)	65
BpiI	GAAGAC	1 cut(s)	295
BpuEI	CTTGAG	1 cut(s)	375
BsaAI	YACGTR	1 cut(s)	46
BsaJI	CCNNGG	2 cut(s)	384, 418
BsaWI	WCCGGW	2 cut(s)	34, 186
Bsc4I	CCNNNNNNNGG	4 cut(s)	79, 216, 419, 434
Bse118I	RCCGGY	2 cut(s)	101, 186
BseAI	TCCGGA	1 cut(s)	34
BseDI	CCNNGG	2 cut(s)	384, 418
BseLI	CCNNNNNNNGG	4 cut(s)	79, 216, 419, 434
BseMII	CTCAG	1 cut(s)	351
BseXI	GCAGC	1 cut(s)	110
BseYI	CCCAGC	1 cut(s)	236
Bsh1236I	CGCG	4 cut(s)	6, 51, 66, 420
Bsh1285I	CGRYCG	1 cut(s)	191
BshFI	GGCC	4 cut(s)	30, 123, 274, 332
BshTI	ACCGGT	1 cut(s)	186
BsiEI	CGRYCG	1 cut(s)	191
BsiSI	CCGG	3 cut(s)	35, 102, 187
BslFI	GGGAC	1 cut(s)	297
BslI	CCNNNNNNNGG	4 cut(s)	79, 216, 419, 434
BsmAI	GTCTC	1 cut(s)	53
BsmFI	GGGAC	1 cut(s)	297
BsnI	GGCC	4 cut(s)	30, 123, 274, 332
Bsp13I	TCCGGA	1 cut(s)	34
Bsp143I	GATC	2 cut(s)	287, 371
Bsp19I	CCATGG	1 cut(s)	384
BspACI	CCGC	7 cut(s)	51, 149, 170, 334, 395, 418, 420
BspANI	GGCC	4 cut(s)	30, 123, 274, 332
BspCNI	CTCAG	1 cut(s)	350
BspEI	TCCGGA	1 cut(s)	34
BspFNI	CGCG	4 cut(s)	6, 51, 66, 420
BspHI	TCATGA	1 cut(s)	75
BspPI	GGATC	1 cut(s)	379
BspQI	GCTCTTC	1 cut(s)	409
BsrBI	CCGCTC	1 cut(s)	336
BsrFI	RCCGGY	2 cut(s)	101, 186
BssAI	RCCGGY	2 cut(s)	101, 186
BssECI	CCNNGG	2 cut(s)	384, 418
BssMI	GATC	2 cut(s)	287, 371
BssT1I	CCWWGG	1 cut(s)	384
Bst6I	CTCTTC	2 cut(s)	385, 409
BstBAI	YACGTR	1 cut(s)	46
BstC8I	GCNNGC	3 cut(s)	103, 334, 418
BstDEI	CTNAG	1 cut(s)	337
BstDSI	CCRYGG	2 cut(s)	384, 418
BstFNI	CGCG	4 cut(s)	6, 51, 66, 420
BstHHI	GCGC	2 cut(s)	6, 51
BstKTI	GATC	2 cut(s)	290, 374
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	2 cut(s)	287, 371
BstMCI	CGRYCG	1 cut(s)	191
BstPAI	GACNNNNGTC	1 cut(s)	65
BstUI	CGCG	4 cut(s)	6, 51, 66, 420
BstV1I	GCAGC	1 cut(s)	110
BstV2I	GAAGAC	1 cut(s)	295
BsuRI	GGCC	4 cut(s)	30, 123, 274, 332
BtgI	CCRYGG	2 cut(s)	384, 418
BtgZI	GCGATG	1 cut(s)	278
BtsI	GCAGTG	1 cut(s)	90
BtsIMutI	CAGTG	1 cut(s)	90
Cac8I	GCNNGC	3 cut(s)	103, 334, 418
CciI	TCATGA	1 cut(s)	75
CfoI	GCGC	2 cut(s)	6, 51
Cfr10I	RCCGGY	2 cut(s)	101, 186
Cfr13I	GGNCC	3 cut(s)	219, 331, 425
Cfr42I	CCGCGG	1 cut(s)	421
CseI	GACGC	1 cut(s)	55
Csp6I	GTAC	1 cut(s)	212
CspAI	ACCGGT	1 cut(s)	186
CviAII	CATG	2 cut(s)	76, 385
CviJI	RGCY	8 cut(s)	30, 101, 123, 236, 249, 274, 332, 389
CviKI_1	RGCY	8 cut(s)	30, 101, 123, 236, 249, 274, 332, 389
CviQI	GTAC	1 cut(s)	212
DdeI	CTNAG	1 cut(s)	337
DpnI	GATC	2 cut(s)	289, 373
DpnII	GATC	2 cut(s)	287, 371
EaeI	YGGCCR	1 cut(s)	272
Eam1104I	CTCTTC	2 cut(s)	385, 409
EarI	CTCTTC	2 cut(s)	385, 409
Eco130I	CCWWGG	1 cut(s)	384
Eco147I	AGGCCT	1 cut(s)	123
Eco47I	GGWCC	2 cut(s)	219, 425
EcoT14I	CCWWGG	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	384
FaeI	CATG	2 cut(s)	79, 388
FaiI	YATR	4 cut(s)	57, 77, 216, 386
FaqI	GGGAC	1 cut(s)	297
FatI	CATG	2 cut(s)	75, 384
FauI	CCCGC	5 cut(s)	44, 156, 177, 341, 425
FblI	GTMKAC	1 cut(s)	69
Fnu4HI	GCNGC	1 cut(s)	99
Fsp4HI	GCNGC	1 cut(s)	99
FspBI	CTAG	1 cut(s)	231
GlaI	GCGC	2 cut(s)	5, 50
GluI	GCNGC	1 cut(s)	99
GsaI	CCCAGC	1 cut(s)	240
HaeIII	GGCC	4 cut(s)	30, 123, 274, 332
HapII	CCGG	3 cut(s)	35, 102, 187
HgaI	GACGC	1 cut(s)	55
HhaI	GCGC	2 cut(s)	6, 51
Hin1II	CATG	2 cut(s)	79, 388
Hin6I	GCGC	2 cut(s)	4, 49
HinP1I	GCGC	2 cut(s)	4, 49
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HpaII	CCGG	3 cut(s)	35, 102, 187
HphI	GGTGA	1 cut(s)	275
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	3 cut(s)	162, 223, 340
Hpy188III	TCNNGA	3 cut(s)	35, 76, 346
Hpy8I	GTNNAC	1 cut(s)	70
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	3 cut(s)	41, 113, 273
HpyCH4IV	ACGT	1 cut(s)	45
HpyF3I	CTNAG	1 cut(s)	337
HpySE526I	ACGT	1 cut(s)	45
Hsp92II	CATG	2 cut(s)	79, 388
HspAI	GCGC	2 cut(s)	4, 49
Kpn2I	TCCGGA	1 cut(s)	34
KroI	GCCGGC	1 cut(s)	101
KroNI	GCCGGC	1 cut(s)	103
KspI	CCGCGG	1 cut(s)	421
Kzo9I	GATC	2 cut(s)	287, 371
LguI	GCTCTTC	1 cut(s)	409
LmnI	GCTCC	1 cut(s)	95
LpnPI	CCDG	8 cut(s)	48, 115, 181, 200, 222, 312, 359, 426
Lsp1109I	GCAGC	1 cut(s)	110
MaeI	CTAG	1 cut(s)	231
MaeII	ACGT	1 cut(s)	45
MalI	GATC	2 cut(s)	289, 373
MbiI	CCGCTC	1 cut(s)	336
MboI	GATC	2 cut(s)	287, 371
MboII	GAAGA	5 cut(s)	124, 295, 346, 372, 396
MfeI	CAATTG	1 cut(s)	366
MluCI	AATT	3 cut(s)	15, 349, 366
MluI	ACGCGT	1 cut(s)	64
MmeI	TCCRAC	1 cut(s)	73
MnlI	CCTC	7 cut(s)	72, 83, 134, 277, 368, 388, 418
MroI	TCCGGA	1 cut(s)	34
MroNI	GCCGGC	1 cut(s)	101
MroXI	GAANNNNTTC	1 cut(s)	353
MseI	TTAA	1 cut(s)	245
MslI	CAYNNNNRTG	1 cut(s)	44
MspA1I	CMGCKG	1 cut(s)	420
MspI	CCGG	3 cut(s)	35, 102, 187
MunI	CAATTG	1 cut(s)	366
MvnI	CGCG	4 cut(s)	6, 51, 66, 420
NaeI	GCCGGC	1 cut(s)	103
NcoI	CCATGG	1 cut(s)	384
NdeII	GATC	2 cut(s)	287, 371
NgoMIV	GCCGGC	1 cut(s)	101
NlaIII	CATG	2 cut(s)	79, 388
PagI	TCATGA	1 cut(s)	75
PceI	AGGCCT	1 cut(s)	123
PciSI	GCTCTTC	1 cut(s)	409
PdiI	GCCGGC	1 cut(s)	103
PdmI	GAANNNNTTC	1 cut(s)	353
PinAI	ACCGGT	1 cut(s)	186
PkrI	GCNGC	1 cut(s)	100
Ppu21I	YACGTR	1 cut(s)	46
PshAI	GACNNNNGTC	1 cut(s)	65
PspFI	CCCAGC	1 cut(s)	236
PspPI	GGNCC	3 cut(s)	219, 331, 425
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
RseI	CAYNNNNRTG	1 cut(s)	44
SacII	CCGCGG	1 cut(s)	421
SalI	GTCGAC	1 cut(s)	68
SapI	GCTCTTC	1 cut(s)	409
SaqAI	TTAA	1 cut(s)	245
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	2 cut(s)	287, 371
Sau96I	GGNCC	3 cut(s)	219, 331, 425
SetI	ASST	7 cut(s)	48, 75, 112, 200, 221, 265, 322
Sfr303I	CCGCGG	1 cut(s)	421
SgrBI	CCGCGG	1 cut(s)	421
SinI	GGWCC	2 cut(s)	219, 425
SmiMI	CAYNNNNRTG	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	390
SmoI	CTYRAG	1 cut(s)	390
Sse9I	AATT	3 cut(s)	15, 349, 366
SseBI	AGGCCT	1 cut(s)	123
SsiI	CCGC	7 cut(s)	51, 149, 170, 334, 395, 418, 420
SspMI	CTAG	1 cut(s)	231
StuI	AGGCCT	1 cut(s)	123
StyI	CCWWGG	1 cut(s)	384
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	2 cut(s)	69, 135
TasI	AATT	3 cut(s)	15, 349, 366
Tru1I	TTAA	1 cut(s)	245
Tru9I	TTAA	1 cut(s)	245
TscAI	CASTG	1 cut(s)	90
TseI	GCWGC	1 cut(s)	98
TspRI	CASTG	1 cut(s)	90
VpaK11BI	GGWCC	2 cut(s)	219, 425
XapI	RAATTY	2 cut(s)	15, 349
XmiI	GTMKAC	1 cut(s)	69
XmnI	GAANNNNTTC	1 cut(s)	353
XspI	CTAG	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.