Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003724.1

Orthogroup ID

OG0009979

Physical Location & Seq

Genomic Coordinates Reverse (-)

23856 .. 28782

Gene Structure 4927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

atggccaattctgacaaaggaattgaggctgctggctctcagcttgatcttcaacaacggcttgatatcactggcgatgccaccttccctggtaggaattccaccagtggtctggttgaattgctgtggcggcgtggctatggagggtctggccggatcgtgaaggccagcgtggcttggtggttctgggcggtttcgtggggatggtcacgacgactaggttctagatggtggtggtcgaaagcgatgcaccgaagctgtgcacatatcttgggttggcaatggtgttttgggctgggcttggggcacccttctctgctaggccttgagctgggcttcctctctcttggagctgccctcttaggcttttattttaggttggggagggcctatgatctctctgattcttcccttgctcgctttgcttacagacccagaaagcagttggtacatttcaaggtacaggccgctgtcactgaaacagaccagccaaaatggtgggaaagaagtgttccgaatatgattgacatacattctactcaagaattcttgagtgctttaggtcaagctggagatagattagttattgcagaattctacggcacttggtgtggttcttgccgtgcattatttcctaagctctgcagaacagctgaggatcaccctgagattctattcctgaaagtgaattttgatgagaataagccaatgtgcaagagtatgaacgtgaaggtccttccctatttccacttttaccgtggatctgagggacagctggaatccttttcatgttcacttgctaagttccagaaaataaaggatgctattgaattacacaacactgctcgttgcagcatcggccctccaaagggtgttggagatcttaaacttgaaccttccttggttcagaaggacagaccctcagaatctgcttcagcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009593 GO:0010109 GO:0016491 GO:0016667 GO:0016671 GO:0019222 GO:0031323 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051606 GO:0051775 GO:0051776 GO:0055114 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

313

Amino Acids

35.18

Weight (kDa)

9.18

Isoelectric Point (pI)

43.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	178 - 263	1e-16	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26160 AT4G29670 AT4G29670
fragaria_vesca	FvH4_1g07270 FvH4_2g02730
malus_domestica	MD02G1077400.v1.1 MD15G1205800.v1.1 MD15G1205900.v1.1
prunus_persica	Prupe.7G211300_v2.0.a1
pyrus_communis	pycom15g18250
rosa_chinensis	RchiOBHm_Chr2g0093171
rosa_laevigata	RLG00000016374
rosa_multiflora	Rmu_sc0003724.1_g000006 Rmu_sc0038852.1_g000002
rosa_roxburghii	Rroxscaffold_2G00148450
rosa_rugosa	Rorug02G0033400
rosa_samantha	Rh2AG079100 Rh2BG080400 Rh2CG082600 Rh2DG078100
rosa_wichuraiana	Rw2G006740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	306
AciI	CCGC	3 cut(s)	130, 191, 468
AclWI	GGATC	3 cut(s)	164, 666, 769
AcoI	YGGCCR	2 cut(s)	3, 151
AcsI	RAATTY	4 cut(s)	97, 545, 593, 688
AcuI	CTGAAG	1 cut(s)	918
AdeI	CACNNNGTG	1 cut(s)	609
AfaI	GTAC	2 cut(s)	450, 462
AfiI	CCNNNNNNNGG	3 cut(s)	331, 868, 869
AgsI	TTSAA	5 cut(s)	53, 119, 457, 830, 893
AjnI	CCWGG	1 cut(s)	88
AluBI	AGCT	8 cut(s)	43, 258, 331, 353, 569, 640, 653, 775
AluI	AGCT	8 cut(s)	43, 258, 331, 353, 569, 640, 653, 775
Alw21I	GWGCWC	1 cut(s)	265
Alw44I	GTGCAC	1 cut(s)	261
AlwI	GGATC	3 cut(s)	164, 666, 769
AlwNI	CAGNNNCTG	1 cut(s)	929
AoxI	GGCC	7 cut(s)	3, 151, 165, 322, 387, 465, 859
ApaLI	GTGCAC	1 cut(s)	261
ApeKI	GCWGC	3 cut(s)	29, 353, 852
ApoI	RAATTY	4 cut(s)	97, 545, 593, 688
AspS9I	GGNCC	3 cut(s)	387, 733, 860
AsuHPI	GGTGA	1 cut(s)	653
AvaII	GGWCC	1 cut(s)	733
BaeGI	GKGCMC	2 cut(s)	265, 309
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	306
Bbv12I	GWGCWC	1 cut(s)	265
BbvCI	CCTCAGC	1 cut(s)	654
BbvI	GCAGC	3 cut(s)	16, 340, 864
BccI	CCATC	2 cut(s)	198, 222
BceAI	ACGGC	3 cut(s)	74, 606, 616
BcgI	CGANNNNNNTGC	2 cut(s)	229, 263
BciT130I	CCWGG	1 cut(s)	90
BfaI	CTAG	3 cut(s)	218, 225, 320
BfmI	CTRYAG	1 cut(s)	643
BglI	GCCNNNNNGGC	1 cut(s)	173
BglII	AGATCT	1 cut(s)	880
BisI	GCNGC	5 cut(s)	30, 131, 354, 468, 853
BlsI	GCNGC	5 cut(s)	31, 132, 355, 469, 854
Bme1390I	CCNGG	1 cut(s)	90
Bme18I	GGWCC	1 cut(s)	733
BmgT120I	GGNCC	3 cut(s)	387, 733, 860
BmiI	GGNNCC	1 cut(s)	308
BmrFI	CCNGG	1 cut(s)	90
BmsI	GCATC	4 cut(s)	67, 237, 811, 864
BplI	GAGNNNNNCTC	2 cut(s)	342, 374
BpmI	CTGGAG	1 cut(s)	591
Bpu10I	CCTNAGC	2 cut(s)	636, 654
BpuEI	CTTGAG	3 cut(s)	347, 525, 571
BsaJI	CCNNGG	3 cut(s)	88, 757, 900
Bsc4I	CCNNNNNNNGG	3 cut(s)	331, 868, 869
Bse1I	ACTGG	2 cut(s)	76, 105
Bse3DI	GCAATG	1 cut(s)	287
BseBI	CCWGG	1 cut(s)	90
BseDI	CCNNGG	3 cut(s)	88, 757, 900
BseGI	GGATG	2 cut(s)	209, 826
BseLI	CCNNNNNNNGG	3 cut(s)	331, 868, 869
BseMI	GCAATG	1 cut(s)	287
BseMII	CTCAG	5 cut(s)	53, 645, 657, 756, 936
BseNI	ACTGG	2 cut(s)	76, 105
BseSI	GKGCMC	2 cut(s)	265, 309
BseXI	GCAGC	3 cut(s)	16, 340, 864
BseYI	CCCAGC	2 cut(s)	295, 331
BshFI	GGCC	7 cut(s)	5, 153, 167, 324, 389, 467, 861
BshNI	GGYRCC	1 cut(s)	306
BsiHKAI	GWGCWC	1 cut(s)	265
BsiSI	CCGG	1 cut(s)	154
BslFI	GGGAC	1 cut(s)	783
BslI	CCNNNNNNNGG	3 cut(s)	331, 868, 869
BsmFI	GGGAC	1 cut(s)	783
BsnI	GGCC	7 cut(s)	5, 153, 167, 324, 389, 467, 861
Bsp1286I	GDGCHC	2 cut(s)	265, 309
Bsp143I	GATC	6 cut(s)	46, 156, 394, 658, 761, 880
BspACI	CCGC	3 cut(s)	130, 191, 468
BspANI	GGCC	7 cut(s)	5, 153, 167, 324, 389, 467, 861
BspCNI	CTCAG	5 cut(s)	52, 646, 658, 757, 935
BspLI	GGNNCC	1 cut(s)	308
BspMAI	CTGCAG	1 cut(s)	647
BspPI	GGATC	3 cut(s)	164, 666, 769
BspT107I	GGYRCC	1 cut(s)	306
BsrDI	GCAATG	1 cut(s)	287
BsrI	ACTGG	2 cut(s)	76, 105
BssECI	CCNNGG	3 cut(s)	88, 757, 900
BssMI	GATC	6 cut(s)	46, 156, 394, 658, 761, 880
BssT1I	CCWWGG	1 cut(s)	900
Bst2UI	CCWGG	1 cut(s)	90
Bst4CI	ACNGT	1 cut(s)	758
BstC8I	GCNNGC	3 cut(s)	34, 169, 418
BstDEI	CTNAG	8 cut(s)	39, 361, 636, 654, 666, 765, 801, 922
BstDSI	CCRYGG	1 cut(s)	757
BstF5I	GGATG	2 cut(s)	209, 826
BstKTI	GATC	6 cut(s)	49, 159, 397, 661, 764, 883
BstMBI	GATC	6 cut(s)	46, 156, 394, 658, 761, 880
BstMWI	GCNNNNNNNGC	4 cut(s)	130, 173, 422, 858
BstNI	CCWGG	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	88
BstSFI	CTRYAG	1 cut(s)	643
BstSLI	GKGCMC	2 cut(s)	265, 309
BstV1I	GCAGC	3 cut(s)	16, 340, 864
BstX2I	RGATCY	2 cut(s)	761, 880
BstXI	CCANNNNNNTGG	2 cut(s)	112, 498
BstYI	RGATCY	2 cut(s)	761, 880
BsuRI	GGCC	7 cut(s)	5, 153, 167, 324, 389, 467, 861
BtgI	CCRYGG	1 cut(s)	757
BtgZI	GCGATG	2 cut(s)	90, 260
BtsCI	GGATG	2 cut(s)	209, 826
BtsI	GCAGTG	1 cut(s)	840
BtsIMutI	CAGTG	4 cut(s)	69, 112, 474, 840
Cac8I	GCNNGC	3 cut(s)	34, 169, 418
CaiI	CAGNNNCTG	1 cut(s)	929
Cfr13I	GGNCC	3 cut(s)	387, 733, 860
Csp6I	GTAC	2 cut(s)	449, 461
CviAII	CATG	1 cut(s)	789
CviQI	GTAC	2 cut(s)	449, 461
DdeI	CTNAG	8 cut(s)	39, 361, 636, 654, 666, 765, 801, 922
DpnI	GATC	6 cut(s)	48, 158, 396, 660, 763, 882
DpnII	GATC	6 cut(s)	46, 156, 394, 658, 761, 880
DraIII	CACNNNGTG	1 cut(s)	609
EaeI	YGGCCR	2 cut(s)	3, 151
Eco130I	CCWWGG	1 cut(s)	900
Eco147I	AGGCCT	1 cut(s)	324
Eco32I	GATATC	1 cut(s)	67
Eco47I	GGWCC	1 cut(s)	733
Eco57I	CTGAAG	1 cut(s)	918
EcoO109I	RGGNCCY	2 cut(s)	387, 733
EcoRI	GAATTC	3 cut(s)	97, 545, 593
EcoRII	CCWGG	1 cut(s)	88
EcoRV	GATATC	1 cut(s)	67
EcoT14I	CCWWGG	1 cut(s)	900
ErhI	CCWWGG	1 cut(s)	900
FaeI	CATG	1 cut(s)	792
FaiI	YATR	8 cut(s)	141, 267, 393, 521, 530, 722, 790, 940
FaqI	GGGAC	1 cut(s)	783
FatI	CATG	1 cut(s)	788
Fnu4HI	GCNGC	5 cut(s)	30, 131, 354, 468, 853
FokI	GGATG	2 cut(s)	216, 833
Fsp4HI	GCNGC	5 cut(s)	30, 131, 354, 468, 853
FspBI	CTAG	3 cut(s)	218, 225, 320
GluI	GCNGC	5 cut(s)	30, 131, 354, 468, 853
GsaI	CCCAGC	2 cut(s)	299, 335
GsuI	CTGGAG	1 cut(s)	591
HaeIII	GGCC	7 cut(s)	5, 153, 167, 324, 389, 467, 861
HapII	CCGG	1 cut(s)	154
Hin1II	CATG	1 cut(s)	792
HinfI	GANTC	4 cut(s)	404, 670, 779, 926
HpaII	CCGG	1 cut(s)	154
HphI	GGTGA	1 cut(s)	653
Hpy166II	GTNNAC	2 cut(s)	263, 794
Hpy188I	TCNGA	6 cut(s)	13, 403, 516, 766, 909, 925
Hpy188III	TCNNGA	7 cut(s)	160, 210, 225, 542, 550, 679, 808
Hpy8I	GTNNAC	2 cut(s)	263, 794
Hpy99I	CGWCG	1 cut(s)	216
HpyAV	CCTTC	7 cut(s)	94, 157, 321, 724, 746, 904, 906
HpyCH4III	ACNGT	1 cut(s)	758
HpyCH4IV	ACGT	1 cut(s)	726
HpyCH4V	TGCA	7 cut(s)	250, 263, 590, 626, 645, 714, 852
HpyF10VI	GCNNNNNNNGC	4 cut(s)	130, 173, 422, 858
HpyF3I	CTNAG	8 cut(s)	39, 361, 636, 654, 666, 765, 801, 922
HpySE526I	ACGT	1 cut(s)	726
Hsp92II	CATG	1 cut(s)	792
Kzo9I	GATC	6 cut(s)	46, 156, 394, 658, 761, 880
LmnI	GCTCC	1 cut(s)	350
Lsp1109I	GCAGC	3 cut(s)	16, 340, 864
LweI	GCATC	4 cut(s)	67, 237, 811, 864
MaeI	CTAG	3 cut(s)	218, 225, 320
MaeII	ACGT	1 cut(s)	726
MaeIII	GTNAC	2 cut(s)	207, 472
MalI	GATC	6 cut(s)	48, 158, 396, 660, 763, 882
MboI	GATC	6 cut(s)	46, 156, 394, 658, 761, 880
MboII	GAAGA	2 cut(s)	41, 399
MflI	RGATCY	2 cut(s)	761, 880
MhlI	GDGCHC	2 cut(s)	265, 309
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	8 cut(s)	7, 21, 97, 119, 545, 593, 688, 830
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	856
MnlI	CCTC	9 cut(s)	19, 137, 350, 368, 378, 649, 760, 873, 931
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	885
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	3 cut(s)	470, 653, 775
MspI	CCGG	1 cut(s)	154
MspR9I	CCNGG	1 cut(s)	90
MvaI	CCWGG	1 cut(s)	90
MwoI	GCNNNNNNNGC	4 cut(s)	130, 173, 422, 858
NdeII	GATC	6 cut(s)	46, 156, 394, 658, 761, 880
NlaIII	CATG	1 cut(s)	792
NlaIV	GGNNCC	1 cut(s)	308
NmuCI	GTSAC	2 cut(s)	207, 472
PceI	AGGCCT	1 cut(s)	324
PfeI	GAWTC	4 cut(s)	404, 670, 779, 926
PkrI	GCNGC	5 cut(s)	31, 132, 355, 469, 854
PpuMI	RGGWCCY	1 cut(s)	733
Psp5II	RGGWCCY	1 cut(s)	733
Psp6I	CCWGG	1 cut(s)	88
PspFI	CCCAGC	2 cut(s)	295, 331
PspGI	CCWGG	1 cut(s)	88
PspN4I	GGNNCC	1 cut(s)	308
PspPI	GGNCC	3 cut(s)	387, 733, 860
PspPPI	RGGWCCY	1 cut(s)	733
PstI	CTGCAG	1 cut(s)	647
PstNI	CAGNNNCTG	1 cut(s)	929
PsuI	RGATCY	2 cut(s)	761, 880
PvuII	CAGCTG	2 cut(s)	653, 775
RsaI	GTAC	2 cut(s)	450, 462
RsaNI	GTAC	2 cut(s)	449, 461
SaqAI	TTAA	1 cut(s)	885
SatI	GCNGC	5 cut(s)	30, 131, 354, 468, 853
Sau3AI	GATC	6 cut(s)	46, 156, 394, 658, 761, 880
Sau96I	GGNCC	3 cut(s)	387, 733, 860
ScrFI	CCNGG	1 cut(s)	90
SduI	GDGCHC	2 cut(s)	265, 309
SfaNI	GCATC	4 cut(s)	67, 237, 811, 864
SfcI	CTRYAG	1 cut(s)	643
SinI	GGWCC	1 cut(s)	733
SmlI	CTYRAG	3 cut(s)	326, 540, 550
SmoI	CTYRAG	3 cut(s)	326, 540, 550
Sse9I	AATT	8 cut(s)	7, 21, 97, 119, 545, 593, 688, 830
SseBI	AGGCCT	1 cut(s)	324
SsiI	CCGC	3 cut(s)	130, 191, 468
SspMI	CTAG	3 cut(s)	218, 225, 320
StuI	AGGCCT	1 cut(s)	324
StyD4I	CCNGG	1 cut(s)	88
StyI	CCWWGG	1 cut(s)	900
TaaI	ACNGT	1 cut(s)	758
TaiI	ACGT	1 cut(s)	729
TaqI	TCGA	1 cut(s)	239
TasI	AATT	8 cut(s)	7, 21, 97, 119, 545, 593, 688, 830
TauI	GCSGC	2 cut(s)	133, 470
TfiI	GAWTC	4 cut(s)	404, 670, 779, 926
Tru1I	TTAA	1 cut(s)	885
Tru9I	TTAA	1 cut(s)	885
TscAI	CASTG	4 cut(s)	76, 112, 481, 847
TseFI	GTSAC	2 cut(s)	207, 472
TseI	GCWGC	3 cut(s)	29, 353, 852
Tsp45I	GTSAC	2 cut(s)	207, 472
TspDTI	ATGAA	2 cut(s)	737, 777
TspRI	CASTG	4 cut(s)	76, 112, 481, 847
VneI	GTGCAC	1 cut(s)	261
VpaK11BI	GGWCC	1 cut(s)	733
XapI	RAATTY	4 cut(s)	97, 545, 593, 688
XbaI	TCTAGA	1 cut(s)	224
XcmI	CCANNNNNNNNNTGG	3 cut(s)	109, 442, 755
XspI	CTAG	3 cut(s)	218, 225, 320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.