Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003784.1

Orthogroup ID

OG0007617

Physical Location & Seq

Genomic Coordinates Forward (+)

18653 .. 22191

Gene Structure 3539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

atggatccgccggtgtcgctggtgaatgaatgctcgtactccaacggcaatgcggcgtcgtataatctctcggagatctggcagtttccgatgaacagcgccggcgcaggcatgggagggggactggggctgcggaggccgagtttcgggcagtttggggacgttttgggcggtggtgatccgaatccgatgagtttggaccaccgagcgaggaagaggcgcgatgctgaggatgagtcgtcgccgtcgcccaaaagcagcggcaatattggcgcgaacggttgtgatgggaaacggcttaaaacagcggggaggtgtggagatgagaatccagaggccaaagctgaggcggaaacgagttcagggaagcctgtggagcagaacactcagccgccggatccacctaagcaggactatatccatgtacgagcaagaaggggtcaagctactgatagtcacagtcttgcagaaagagctagaagagaaaagattagcgaaaggatgaaaattctccaagatctggtccctggttgtaataaggttattgggaaagcactggtccttgatgagataattaattatatccaatcattgcagcgtcaagtggagttcctgtctatgaagcttgaagcagttaatacaagaatgactcctgccatcgaggtgtttccttctaaagaaaacggttgtgatgggaaacggcttaaaacagcggggaggtgtggagatgagaatccagaggccaaagctgaggcggaaacgagttcagggaagcctgtggagcagaacactcagccgccggatccacctaagcaggactatatccacgtacgagcaagaaggggtcaagctactgatagtcacagtcttgcagaaagagctagaagagaaaagattagcgaaaggatgaaaattctccaagatctggtccctggttgtaataaggttattgggaaagcactggtccttgatgagataattaattatatccaatcattgcagcgtcaagtggagttcctgtctatgaagcttgaagcagttaatacaagaatgactcctgccatcgaggtgtttccttctaaagaatttggtcagcagacattcgacactgctgcaatggcattcggtacacaacctccaagggaatatagccgtggatcttcaccagaatggttgcatatgcaagttggtggcggttttgaaagaacaacatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048444 GO:0048446 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

404

Amino Acids

44.35

Weight (kDa)

7.59

Isoelectric Point (pI)

56.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	152 - 199	7.4e-09	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	157 - 202	3.2e-08	Transcription factor SAC51 bHLH domain
HLH	PF00010	287 - 334	7.4e-09	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	292 - 337	3.2e-08	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59640 AT1G59640
fragaria_vesca	FvH4_4g35460 FvH4_4g35460 FvH4_4g35460 FvH4_4g35460 FvH4_4g35460 FvH4_4g35460
malus_domestica	MD13G1083200.v1.1 MD16G1082000.v1.1
prunus_persica	Prupe.1G263800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0445091
rosa_laevigata	RLG00000005768
rosa_multiflora	Rmu_co8451895.1_g000001 Rmu_sc0003784.1_g000005 Rmu_sc0029783.1_g000009
rosa_roxburghii	Rroxscaffold_5G00385630
rosa_rugosa	Rorug04G0358700 Rorug04G0358800
rosa_samantha	Rh4AG419700 Rh4BG431500 Rh4CG446000 Rh4DG427600
rosa_wichuraiana	Rw4G035970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	520, 925
AccII	CGCG	2 cut(s)	222, 275
AclWI	GGATC	7 cut(s)	12, 173, 392, 405, 797, 810, 1165
AcsI	RAATTY	3 cut(s)	507, 912, 1085
AcyI	GRCGYC	1 cut(s)	56
AfaI	GTAC	4 cut(s)	38, 426, 831, 1129
AfiI	CCNNNNNNNGG	3 cut(s)	146, 520, 925
AgsI	TTSAA	3 cut(s)	629, 1034, 1202
AjnI	CCWGG	2 cut(s)	526, 931
AluBI	AGCT	8 cut(s)	344, 446, 476, 625, 749, 851, 881, 1030
AluI	AGCT	8 cut(s)	344, 446, 476, 625, 749, 851, 881, 1030
AlwI	GGATC	7 cut(s)	12, 173, 392, 405, 797, 810, 1165
AoxI	GGCC	3 cut(s)	137, 336, 741
ApeKI	GCWGC	5 cut(s)	130, 258, 595, 1000, 1112
ApoI	RAATTY	3 cut(s)	507, 912, 1085
AseI	ATTAAT	2 cut(s)	576, 981
AspLEI	GCGC	4 cut(s)	101, 107, 222, 275
AspS9I	GGNCC	5 cut(s)	199, 523, 559, 928, 964
AsuHPI	GGTGA	3 cut(s)	34, 188, 1155
AvaII	GGWCC	5 cut(s)	199, 523, 559, 928, 964
BamHI	GGATCC	3 cut(s)	4, 397, 802
BbvCI	CCTCAGC	3 cut(s)	228, 345, 750
BbvI	GCAGC	5 cut(s)	117, 270, 607, 1012, 1099
BccI	CCATC	4 cut(s)	281, 665, 686, 1070
BceAI	ACGGC	5 cut(s)	61, 229, 311, 716, 1137
BcgI	CGANNNNNNTGC	2 cut(s)	1094, 1128
BciT130I	CCWGG	2 cut(s)	528, 933
BfaI	CTAG	2 cut(s)	477, 882
BfoI	RGCGCY	1 cut(s)	102
BglII	AGATCT	3 cut(s)	75, 517, 922
BisI	GCNGC	9 cut(s)	54, 131, 259, 262, 392, 596, 797, 1001, 1113
BlsI	GCNGC	9 cut(s)	55, 132, 260, 263, 393, 597, 798, 1002, 1114
Bme1390I	CCNGG	2 cut(s)	528, 933
Bme18I	GGWCC	5 cut(s)	199, 523, 559, 928, 964
BmgT120I	GGNCC	5 cut(s)	199, 523, 559, 928, 964
BmiI	GGNNCC	5 cut(s)	6, 399, 525, 804, 930
BmrFI	CCNGG	2 cut(s)	528, 933
BmrI	ACTGGG	1 cut(s)	134
BmsI	GCATC	1 cut(s)	214
BmuI	ACTGGG	1 cut(s)	134
Bpu10I	CCTNAGC	5 cut(s)	228, 345, 405, 750, 810
BsaAI	YACGTR	1 cut(s)	829
BsaBI	GATNNNNATC	3 cut(s)	183, 327, 732
BsaHI	GRCGYC	1 cut(s)	56
BsaJI	CCNNGG	4 cut(s)	526, 931, 1139, 1153
BsaXI	ACNNNNNCTCC	8 cut(s)	127, 157, 599, 629, 1004, 1034, 1120, 1150
Bsc4I	CCNNNNNNNGG	3 cut(s)	146, 520, 925
Bse118I	RCCGGY	2 cut(s)	10, 101
Bse1I	ACTGG	3 cut(s)	129, 561, 966
Bse3DI	GCAATG	4 cut(s)	55, 590, 995, 1122
Bse8I	GATNNNNATC	3 cut(s)	183, 327, 732
BseBI	CCWGG	2 cut(s)	528, 933
BseDI	CCNNGG	4 cut(s)	526, 931, 1139, 1153
BseGI	GGATG	3 cut(s)	238, 507, 912
BseJI	GATNNNNATC	3 cut(s)	183, 327, 732
BseLI	CCNNNNNNNGG	3 cut(s)	146, 520, 925
BseMI	GCAATG	4 cut(s)	55, 590, 995, 1122
BseMII	CTCAG	5 cut(s)	219, 336, 401, 741, 806
BseNI	ACTGG	3 cut(s)	129, 561, 966
BseXI	GCAGC	5 cut(s)	117, 270, 607, 1012, 1099
Bsh1236I	CGCG	2 cut(s)	222, 275
BshFI	GGCC	3 cut(s)	139, 338, 743
BsiSI	CCGG	4 cut(s)	11, 102, 395, 800
BsiWI	CGTACG	1 cut(s)	829
BslFI	GGGAC	4 cut(s)	135, 173, 509, 914
BslI	CCNNNNNNNGG	3 cut(s)	146, 520, 925
BsmFI	GGGAC	4 cut(s)	135, 173, 509, 914
BsmI	GAATGC	2 cut(s)	35, 1121
BsnI	GGCC	3 cut(s)	139, 338, 743
Bsp143I	GATC	8 cut(s)	4, 75, 178, 397, 517, 802, 922, 1157
BspANI	GGCC	3 cut(s)	139, 338, 743
BspCNI	CTCAG	5 cut(s)	220, 337, 400, 742, 805
BspFNI	CGCG	2 cut(s)	222, 275
BspLI	GGNNCC	5 cut(s)	6, 399, 525, 804, 930
BspPI	GGATC	7 cut(s)	12, 173, 392, 405, 797, 810, 1165
BsrDI	GCAATG	4 cut(s)	55, 590, 995, 1122
BsrFI	RCCGGY	2 cut(s)	10, 101
BsrI	ACTGG	3 cut(s)	129, 561, 966
BssAI	RCCGGY	2 cut(s)	10, 101
BssECI	CCNNGG	4 cut(s)	526, 931, 1139, 1153
BssMI	GATC	8 cut(s)	4, 75, 178, 397, 517, 802, 922, 1157
BssNI	GRCGYC	1 cut(s)	56
BssT1I	CCWWGG	1 cut(s)	1139
Bst2UI	CCWGG	2 cut(s)	528, 933
Bst4CI	ACNGT	4 cut(s)	281, 461, 686, 866
Bst6I	CTCTTC	3 cut(s)	209, 475, 880
BstACI	GRCGYC	1 cut(s)	56
BstBAI	YACGTR	1 cut(s)	829
BstC8I	GCNNGC	2 cut(s)	103, 109
BstDEI	CTNAG	7 cut(s)	228, 345, 387, 405, 750, 792, 810
BstDSI	CCRYGG	1 cut(s)	1153
BstF5I	GGATG	3 cut(s)	238, 507, 912
BstFNI	CGCG	2 cut(s)	222, 275
BstH2I	RGCGCY	1 cut(s)	102
BstHHI	GCGC	4 cut(s)	101, 107, 222, 275
BstKTI	GATC	8 cut(s)	7, 78, 181, 400, 520, 805, 925, 1160
BstMBI	GATC	8 cut(s)	4, 75, 178, 397, 517, 802, 922, 1157
BstMWI	GCNNNNNNNGC	8 cut(s)	16, 136, 270, 376, 473, 781, 878, 1118
BstNI	CCWGG	2 cut(s)	528, 933
BstSCI	CCNGG	2 cut(s)	526, 931
BstUI	CGCG	2 cut(s)	222, 275
BstV1I	GCAGC	5 cut(s)	117, 270, 607, 1012, 1099
BstX2I	RGATCY	7 cut(s)	4, 75, 397, 517, 802, 922, 1157
BstYI	RGATCY	7 cut(s)	4, 75, 397, 517, 802, 922, 1157
BsuRI	GGCC	3 cut(s)	139, 338, 743
BtgI	CCRYGG	1 cut(s)	1153
BtgZI	GCGATG	1 cut(s)	237
BtsCI	GGATG	3 cut(s)	238, 507, 912
BtsI	GCAGTG	1 cut(s)	1107
BtsIMutI	CAGTG	3 cut(s)	554, 959, 1107
Cac8I	GCNNGC	2 cut(s)	103, 109
CfoI	GCGC	4 cut(s)	101, 107, 222, 275
Cfr10I	RCCGGY	2 cut(s)	10, 101
Cfr13I	GGNCC	5 cut(s)	199, 523, 559, 928, 964
CseI	GACGC	3 cut(s)	45, 587, 992
Csp6I	GTAC	4 cut(s)	37, 425, 830, 1128
CviAII	CATG	2 cut(s)	112, 422
CviQI	GTAC	4 cut(s)	37, 425, 830, 1128
DdeI	CTNAG	7 cut(s)	228, 345, 387, 405, 750, 792, 810
DpnI	GATC	8 cut(s)	6, 77, 180, 399, 519, 804, 924, 1159
DpnII	GATC	8 cut(s)	4, 75, 178, 397, 517, 802, 922, 1157
Eam1104I	CTCTTC	3 cut(s)	209, 475, 880
EarI	CTCTTC	3 cut(s)	209, 475, 880
EciI	GGCGGA	2 cut(s)	365, 770
Eco130I	CCWWGG	1 cut(s)	1139
Eco47I	GGWCC	5 cut(s)	199, 523, 559, 928, 964
EcoRII	CCWGG	2 cut(s)	526, 931
EcoT14I	CCWWGG	1 cut(s)	1139
ErhI	CCWWGG	1 cut(s)	1139
FaeI	CATG	2 cut(s)	115, 425
FaqI	GGGAC	4 cut(s)	135, 173, 509, 914
FatI	CATG	2 cut(s)	111, 421
FauI	CCCGC	2 cut(s)	301, 706
FauNDI	CATATG	1 cut(s)	1179
Fnu4HI	GCNGC	9 cut(s)	54, 131, 259, 262, 392, 596, 797, 1001, 1113
FokI	GGATG	3 cut(s)	245, 514, 919
Fsp4HI	GCNGC	9 cut(s)	54, 131, 259, 262, 392, 596, 797, 1001, 1113
FspBI	CTAG	2 cut(s)	477, 882
GlaI	GCGC	4 cut(s)	100, 106, 221, 274
GluI	GCNGC	9 cut(s)	54, 131, 259, 262, 392, 596, 797, 1001, 1113
HaeII	RGCGCY	1 cut(s)	102
HaeIII	GGCC	3 cut(s)	139, 338, 743
HapII	CCGG	4 cut(s)	11, 102, 395, 800
HgaI	GACGC	3 cut(s)	45, 587, 992
HhaI	GCGC	4 cut(s)	101, 107, 222, 275
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	2 cut(s)	115, 425
Hin6I	GCGC	4 cut(s)	99, 105, 220, 273
HinP1I	GCGC	4 cut(s)	99, 105, 220, 273
HindIII	AAGCTT	2 cut(s)	623, 1028
HinfI	GANTC	6 cut(s)	184, 236, 328, 649, 733, 1054
HpaII	CCGG	4 cut(s)	11, 102, 395, 800
HphI	GGTGA	3 cut(s)	34, 188, 1155
Hpy166II	GTNNAC	1 cut(s)	1130
Hpy188I	TCNGA	4 cut(s)	73, 90, 183, 189
Hpy188III	TCNNGA	2 cut(s)	332, 737
Hpy8I	GTNNAC	1 cut(s)	1130
Hpy99I	CGWCG	3 cut(s)	61, 244, 250
HpyAV	CCTTC	4 cut(s)	429, 681, 834, 1086
HpyCH4III	ACNGT	4 cut(s)	281, 461, 686, 866
HpyCH4IV	ACGT	2 cut(s)	162, 828
HpyCH4V	TGCA	7 cut(s)	467, 595, 872, 1000, 1115, 1177, 1183
HpyF10VI	GCNNNNNNNGC	8 cut(s)	16, 136, 270, 376, 473, 781, 878, 1118
HpyF3I	CTNAG	7 cut(s)	228, 345, 387, 405, 750, 792, 810
HpySE526I	ACGT	2 cut(s)	162, 828
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	2 cut(s)	115, 425
HspAI	GCGC	4 cut(s)	99, 105, 220, 273
KroI	GCCGGC	1 cut(s)	101
KroNI	GCCGGC	1 cut(s)	103
Kzo9I	GATC	8 cut(s)	4, 75, 178, 397, 517, 802, 922, 1157
LmnI	GCTCC	2 cut(s)	376, 781
Lsp1109I	GCAGC	5 cut(s)	117, 270, 607, 1012, 1099
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	2 cut(s)	477, 882
MaeII	ACGT	2 cut(s)	162, 828
MaeIII	GTNAC	2 cut(s)	455, 860
MalI	GATC	8 cut(s)	6, 77, 180, 399, 519, 804, 924, 1159
MboI	GATC	8 cut(s)	4, 75, 178, 397, 517, 802, 922, 1157
MboII	GAAGA	4 cut(s)	226, 492, 897, 1152
MflI	RGATCY	7 cut(s)	4, 75, 397, 517, 802, 922, 1157
MluCI	AATT	7 cut(s)	507, 573, 577, 912, 978, 982, 1085
MlyI	GAGTC	3 cut(s)	245, 643, 1048
MmeI	TCCRAC	1 cut(s)	66
MreI	CGCCGGCG	1 cut(s)	101
MroNI	GCCGGC	1 cut(s)	101
MseI	TTAA	6 cut(s)	300, 576, 636, 705, 981, 1041
MslI	CAYNNNNRTG	3 cut(s)	662, 1067, 1168
MspA1I	CMGCKG	3 cut(s)	261, 308, 713
MspI	CCGG	4 cut(s)	11, 102, 395, 800
MspR9I	CCNGG	2 cut(s)	528, 933
Mva1269I	GAATGC	2 cut(s)	35, 1121
MvaI	CCWGG	2 cut(s)	528, 933
MvnI	CGCG	2 cut(s)	222, 275
MwoI	GCNNNNNNNGC	8 cut(s)	16, 136, 270, 376, 473, 781, 878, 1118
NaeI	GCCGGC	1 cut(s)	103
NdeI	CATATG	1 cut(s)	1179
NdeII	GATC	8 cut(s)	4, 75, 178, 397, 517, 802, 922, 1157
NgoMIV	GCCGGC	1 cut(s)	101
NlaIII	CATG	2 cut(s)	115, 425
NlaIV	GGNNCC	5 cut(s)	6, 399, 525, 804, 930
NmeAIII	GCCGAG	1 cut(s)	165
NmuCI	GTSAC	2 cut(s)	455, 860
PctI	GAATGC	2 cut(s)	35, 1121
PdiI	GCCGGC	1 cut(s)	103
PfeI	GAWTC	3 cut(s)	184, 328, 733
Pfl23II	CGTACG	1 cut(s)	829
PflMI	CCANNNNNTGG	2 cut(s)	520, 925
PkrI	GCNGC	9 cut(s)	55, 132, 260, 263, 393, 597, 798, 1002, 1114
PleI	GAGTC	3 cut(s)	244, 643, 1048
PpsI	GAGTC	3 cut(s)	244, 643, 1048
Ppu21I	YACGTR	1 cut(s)	829
PshBI	ATTAAT	2 cut(s)	576, 981
Psp6I	CCWGG	2 cut(s)	526, 931
PspGI	CCWGG	2 cut(s)	526, 931
PspLI	CGTACG	1 cut(s)	829
PspN4I	GGNNCC	5 cut(s)	6, 399, 525, 804, 930
PspPI	GGNCC	5 cut(s)	199, 523, 559, 928, 964
PsuI	RGATCY	7 cut(s)	4, 75, 397, 517, 802, 922, 1157
RsaI	GTAC	4 cut(s)	38, 426, 831, 1129
RsaNI	GTAC	4 cut(s)	37, 425, 830, 1128
RseI	CAYNNNNRTG	3 cut(s)	662, 1067, 1168
SaqAI	TTAA	6 cut(s)	300, 576, 636, 705, 981, 1041
SatI	GCNGC	9 cut(s)	54, 131, 259, 262, 392, 596, 797, 1001, 1113
Sau3AI	GATC	8 cut(s)	4, 75, 178, 397, 517, 802, 922, 1157
Sau96I	GGNCC	5 cut(s)	199, 523, 559, 928, 964
SchI	GAGTC	3 cut(s)	245, 643, 1048
ScrFI	CCNGG	2 cut(s)	528, 933
SfaNI	GCATC	1 cut(s)	214
SgrAI	CRCCGGYG	2 cut(s)	10, 101
SinI	GGWCC	5 cut(s)	199, 523, 559, 928, 964
SmiMI	CAYNNNNRTG	3 cut(s)	662, 1067, 1168
Sse9I	AATT	7 cut(s)	507, 573, 577, 912, 978, 982, 1085
SspI	AATATT	1 cut(s)	268
SspMI	CTAG	2 cut(s)	477, 882
StyD4I	CCNGG	2 cut(s)	526, 931
StyI	CCWWGG	1 cut(s)	1139
TaaI	ACNGT	4 cut(s)	281, 461, 686, 866
TaiI	ACGT	2 cut(s)	165, 831
TaqI	TCGA	3 cut(s)	660, 1065, 1104
TasI	AATT	7 cut(s)	507, 573, 577, 912, 978, 982, 1085
TauI	GCSGC	4 cut(s)	56, 264, 394, 799
TfiI	GAWTC	3 cut(s)	184, 328, 733
Tru1I	TTAA	6 cut(s)	300, 576, 636, 705, 981, 1041
Tru9I	TTAA	6 cut(s)	300, 576, 636, 705, 981, 1041
TscAI	CASTG	3 cut(s)	561, 966, 1114
TseFI	GTSAC	2 cut(s)	455, 860
TseI	GCWGC	5 cut(s)	130, 258, 595, 1000, 1112
Tsp45I	GTSAC	2 cut(s)	455, 860
TspDTI	ATGAA	6 cut(s)	42, 107, 518, 635, 923, 1040
TspRI	CASTG	3 cut(s)	561, 966, 1114
Van91I	CCANNNNNTGG	2 cut(s)	520, 925
VpaK11BI	GGWCC	5 cut(s)	199, 523, 559, 928, 964
VspI	ATTAAT	2 cut(s)	576, 981
XapI	RAATTY	3 cut(s)	507, 912, 1085
XspI	CTAG	2 cut(s)	477, 882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.