Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004046.1

Orthogroup ID

OG0012457

Physical Location & Seq

Genomic Coordinates Reverse (-)

32925 .. 35820

Gene Structure 2896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004046.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

atggtccacgatactcctccgccaaacaaattaagagtgattgcggaaatgggatccttgaatcctatgcttctcagaggcgtatctctcctccgcgtccgtctccaccgccaccaccggctggggtttgggattgcggcagcgccgagtcgcagggcgtgctgcaccgagtcgattggggcggaggagagtagttcggacaactcctcgacgctaagaggcgtgctgagcgtgaacgaggcacccaagtatccgcggtgggacgacccggactactgcaagtggaaagataaggaaggcgagattctgagggacgtggagcctgtagttttgcttgccaaagagattctccattcggataggtatatggatggtgagcagctaacagttgaagatgaaaaagttgtggtggaaaggcttctggcgtatcatccgcattccgaagataaaattggctgcggaattgattctataatggttgatcggcatccccaattcaaacactcaaggtgcttatttgtcataagaactgatggtgtatggatagacttctcctaccagaagtgtcttcgagcatatatccgagataagtacccaacccatgcagaaagattcattcgagaacattttaaacgtggtagtggctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3223

Protein Analysis

215

Amino Acids

24.73

Weight (kDa)

7.7

Isoelectric Point (pI)

45.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46630
fragaria_vesca	FvH4_2g33750
malus_domestica	MD08G1093000.v1.1 MD08G1093500.v1.1 MD15G1077200.v1.1
prunus_persica	Prupe.1G430600_v2.0.a1
pyrus_communis	pycom08g07580 pycom08g07600 pycom15g07190
rosa_chinensis	RchiOBHm_Chr6g0308801
rosa_laevigata	RLG00000010617
rosa_multiflora	Rmu_sc0004046.1_g000005
rosa_roxburghii	Rroxscaffold_7G00159910
rosa_rugosa	Rorug06G0368300
rosa_samantha	Rh6AG479600 Rh6BG489100 Rh6CG494600 Rh6DG479900
rosa_wichuraiana	Rw6G041810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	241
AccB7I	CCANNNNNTGG	1 cut(s)	121
AccII	CGCG	2 cut(s)	96, 256
AclWI	GGATC	2 cut(s)	48, 61
AfaI	GTAC	1 cut(s)	593
AfiI	CCNNNNNNNGG	1 cut(s)	121
AgsI	TTSAA	3 cut(s)	61, 392, 499
AjiI	CACGTC	1 cut(s)	316
AjuI	GAANNNNNNNTTGG	2 cut(s)	435, 467
AluBI	AGCT	1 cut(s)	382
AluI	AGCT	1 cut(s)	382
Alw26I	GTCTC	1 cut(s)	107
AlwI	GGATC	2 cut(s)	48, 61
ApeKI	GCWGC	4 cut(s)	140, 162, 379, 456
Asp700I	GAANNNNTTC	2 cut(s)	417, 466
AspLEI	GCGC	1 cut(s)	145
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	269
AsuHPI	GGTGA	1 cut(s)	386
AvaII	GGWCC	1 cut(s)	4
BaeI	ACNNNNGTAYC	2 cut(s)	233, 266
BamHI	GGATCC	1 cut(s)	53
BanI	GGYRCC	1 cut(s)	241
BbsI	GAAGAC	1 cut(s)	560
BbvI	GCAGC	4 cut(s)	149, 152, 391, 443
BccI	CCATC	2 cut(s)	365, 527
BciVI	GTATCC	1 cut(s)	261
BcnI	CCSGG	1 cut(s)	269
BcoDI	GTCTC	1 cut(s)	107
BfmI	CTRYAG	1 cut(s)	324
BfoI	RGCGCY	1 cut(s)	146
BfuI	GTATCC	1 cut(s)	261
BisI	GCNGC	5 cut(s)	138, 141, 163, 380, 457
BlpI	GCTNAGC	1 cut(s)	227
BlsI	GCNGC	5 cut(s)	139, 142, 164, 381, 458
Bme1390I	CCNGG	1 cut(s)	269
Bme18I	GGWCC	1 cut(s)	4
BmgBI	CACGTC	1 cut(s)	316
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	3 cut(s)	55, 243, 321
BmrFI	CCNGG	1 cut(s)	269
BmsI	GCATC	1 cut(s)	496
BpiI	GAAGAC	1 cut(s)	560
Bpu1102I	GCTNAGC	1 cut(s)	227
BpuEI	CTTGAG	1 cut(s)	490
BpuMI	CCSGG	1 cut(s)	269
BsaBI	GATNNNNATC	1 cut(s)	486
BsaJI	CCNNGG	1 cut(s)	254
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
Bse118I	RCCGGY	1 cut(s)	117
Bse8I	GATNNNNATC	1 cut(s)	486
BseDI	CCNNGG	1 cut(s)	254
BseGI	GGATG	3 cut(s)	376, 430, 487
BseJI	GATNNNNATC	1 cut(s)	486
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseMII	CTCAG	3 cut(s)	88, 218, 299
BseRI	GAGGAG	4 cut(s)	6, 80, 196, 200
BseXI	GCAGC	4 cut(s)	149, 152, 391, 443
BseYI	CCCAGC	1 cut(s)	121
BsgI	GTGCAG	1 cut(s)	148
Bsh1236I	CGCG	2 cut(s)	96, 256
BshNI	GGYRCC	1 cut(s)	241
BsiSI	CCGG	2 cut(s)	118, 269
BslFI	GGGAC	2 cut(s)	275, 326
BslI	CCNNNNNNNGG	1 cut(s)	121
BsmAI	GTCTC	1 cut(s)	107
BsmBI	CGTCTC	1 cut(s)	107
BsmFI	GGGAC	2 cut(s)	275, 326
BsmI	GAATGC	1 cut(s)	436
Bsp143I	GATC	2 cut(s)	53, 481
Bsp1720I	GCTNAGC	1 cut(s)	227
BspCNI	CTCAG	3 cut(s)	87, 219, 300
BspFNI	CGCG	2 cut(s)	96, 256
BspLI	GGNNCC	3 cut(s)	55, 243, 321
BspPI	GGATC	2 cut(s)	48, 61
BspT107I	GGYRCC	1 cut(s)	241
BsrFI	RCCGGY	1 cut(s)	117
BssAI	RCCGGY	1 cut(s)	117
BssECI	CCNNGG	1 cut(s)	254
BssMI	GATC	2 cut(s)	53, 481
Bst4CI	ACNGT	1 cut(s)	388
BstAPI	GCANNNNNTGC	1 cut(s)	159
BstC8I	GCNNGC	3 cut(s)	160, 224, 336
BstDEI	CTNAG	4 cut(s)	74, 215, 227, 308
BstDSI	CCRYGG	1 cut(s)	254
BstF5I	GGATG	3 cut(s)	376, 430, 487
BstFNI	CGCG	2 cut(s)	96, 256
BstH2I	RGCGCY	1 cut(s)	146
BstHHI	GCGC	1 cut(s)	145
BstKTI	GATC	2 cut(s)	56, 484
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	2 cut(s)	53, 481
BstMWI	GCNNNNNNNGC	2 cut(s)	159, 228
BstSCI	CCNGG	1 cut(s)	267
BstSFI	CTRYAG	1 cut(s)	324
BstUI	CGCG	2 cut(s)	96, 256
BstV1I	GCAGC	4 cut(s)	149, 152, 391, 443
BstV2I	GAAGAC	1 cut(s)	560
BstX2I	RGATCY	1 cut(s)	53
BstYI	RGATCY	1 cut(s)	53
BsuI	GTATCC	1 cut(s)	261
BtgI	CCRYGG	1 cut(s)	254
BtrI	CACGTC	1 cut(s)	316
BtsCI	GGATG	3 cut(s)	376, 430, 487
Cac8I	GCNNGC	3 cut(s)	160, 224, 336
CfoI	GCGC	1 cut(s)	145
Cfr10I	RCCGGY	1 cut(s)	117
Cfr13I	GGNCC	1 cut(s)	4
Cfr42I	CCGCGG	1 cut(s)	257
CseI	GACGC	2 cut(s)	85, 220
Csp6I	GTAC	1 cut(s)	592
CviAII	CATG	1 cut(s)	602
CviJI	RGCY	6 cut(s)	121, 322, 382, 418, 456, 645
CviKI_1	RGCY	6 cut(s)	121, 322, 382, 418, 456, 645
CviQI	GTAC	1 cut(s)	592
DdeI	CTNAG	4 cut(s)	74, 215, 227, 308
DpnI	GATC	2 cut(s)	55, 483
DpnII	GATC	2 cut(s)	53, 481
DraI	TTTAAA	1 cut(s)	631
EciI	GGCGGA	2 cut(s)	9, 197
Eco47I	GGWCC	1 cut(s)	4
Esp3I	CGTCTC	1 cut(s)	107
FaeI	CATG	1 cut(s)	605
FaiI	YATR	9 cut(s)	68, 366, 368, 473, 524, 541, 577, 579, 603
FaqI	GGGAC	2 cut(s)	275, 326
FatI	CATG	1 cut(s)	601
Fnu4HI	GCNGC	5 cut(s)	138, 141, 163, 380, 457
FokI	GGATG	3 cut(s)	383, 417, 474
Fsp4HI	GCNGC	5 cut(s)	138, 141, 163, 380, 457
GlaI	GCGC	1 cut(s)	144
GluI	GCNGC	5 cut(s)	138, 141, 163, 380, 457
GsaI	CCCAGC	1 cut(s)	125
HaeII	RGCGCY	1 cut(s)	146
HapII	CCGG	2 cut(s)	118, 269
HgaI	GACGC	2 cut(s)	85, 220
HhaI	GCGC	1 cut(s)	145
Hin1II	CATG	1 cut(s)	605
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HinfI	GANTC	7 cut(s)	61, 148, 170, 304, 346, 467, 612
HpaII	CCGG	2 cut(s)	118, 269
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	2 cut(s)	7, 235
Hpy188I	TCNGA	6 cut(s)	77, 199, 309, 358, 442, 584
Hpy188III	TCNNGA	1 cut(s)	620
Hpy8I	GTNNAC	2 cut(s)	7, 235
Hpy99I	CGWCG	1 cut(s)	214
HpyAV	CCTTC	1 cut(s)	290
HpyCH4III	ACNGT	1 cut(s)	388
HpyCH4IV	ACGT	2 cut(s)	315, 634
HpyCH4V	TGCA	3 cut(s)	165, 279, 605
HpyF10VI	GCNNNNNNNGC	2 cut(s)	159, 228
HpyF3I	CTNAG	4 cut(s)	74, 215, 227, 308
HpySE526I	ACGT	2 cut(s)	315, 634
Hsp92II	CATG	1 cut(s)	605
HspAI	GCGC	1 cut(s)	143
KspI	CCGCGG	1 cut(s)	257
Kzo9I	GATC	2 cut(s)	53, 481
LmnI	GCTCC	1 cut(s)	319
LpnPI	CCDG	7 cut(s)	107, 131, 139, 282, 336, 407, 572
Lsp1109I	GCAGC	4 cut(s)	149, 152, 391, 443
LweI	GCATC	1 cut(s)	496
MaeII	ACGT	2 cut(s)	315, 634
MalI	GATC	2 cut(s)	55, 483
MboI	GATC	2 cut(s)	53, 481
MboII	GAAGA	3 cut(s)	404, 455, 560
MflI	RGATCY	1 cut(s)	53
MluCI	AATT	4 cut(s)	29, 450, 462, 494
MlyI	GAGTC	2 cut(s)	157, 179
MnlI	CCTC	8 cut(s)	27, 71, 101, 178, 212, 217, 232, 303
MroXI	GAANNNNTTC	2 cut(s)	417, 466
MseI	TTAA	2 cut(s)	32, 630
MspA1I	CMGCKG	1 cut(s)	256
MspI	CCGG	2 cut(s)	118, 269
MspR9I	CCNGG	1 cut(s)	269
Mva1269I	GAATGC	1 cut(s)	436
MvnI	CGCG	2 cut(s)	96, 256
MwoI	GCNNNNNNNGC	2 cut(s)	159, 228
NciI	CCSGG	1 cut(s)	269
NdeII	GATC	2 cut(s)	53, 481
NlaIII	CATG	1 cut(s)	605
NlaIV	GGNNCC	3 cut(s)	55, 243, 321
NmeAIII	GCCGAG	1 cut(s)	171
PctI	GAATGC	1 cut(s)	436
PdmI	GAANNNNTTC	2 cut(s)	417, 466
PfeI	GAWTC	5 cut(s)	61, 304, 346, 467, 612
PflMI	CCANNNNNTGG	1 cut(s)	121
PkrI	GCNGC	5 cut(s)	139, 142, 164, 381, 458
PleI	GAGTC	2 cut(s)	156, 178
PpsI	GAGTC	2 cut(s)	156, 178
PspFI	CCCAGC	1 cut(s)	121
PspN4I	GGNNCC	3 cut(s)	55, 243, 321
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	53
RsaI	GTAC	1 cut(s)	593
RsaNI	GTAC	1 cut(s)	592
SacII	CCGCGG	1 cut(s)	257
SaqAI	TTAA	2 cut(s)	32, 630
SatI	GCNGC	5 cut(s)	138, 141, 163, 380, 457
Sau3AI	GATC	2 cut(s)	53, 481
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	2 cut(s)	157, 179
ScrFI	CCNGG	1 cut(s)	269
SetI	ASST	5 cut(s)	318, 365, 384, 512, 637
SfaNI	GCATC	1 cut(s)	496
SfcI	CTRYAG	1 cut(s)	324
Sfr303I	CCGCGG	1 cut(s)	257
SgrBI	CCGCGG	1 cut(s)	257
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	1 cut(s)	505
SmoI	CTYRAG	1 cut(s)	505
Sse9I	AATT	4 cut(s)	29, 450, 462, 494
StyD4I	CCNGG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	388
TaiI	ACGT	2 cut(s)	318, 637
TaqI	TCGA	4 cut(s)	173, 209, 571, 619
TasI	AATT	4 cut(s)	29, 450, 462, 494
TauI	GCSGC	1 cut(s)	140
TfiI	GAWTC	5 cut(s)	61, 304, 346, 467, 612
Tru1I	TTAA	2 cut(s)	32, 630
Tru9I	TTAA	2 cut(s)	32, 630
TseI	GCWGC	4 cut(s)	140, 162, 379, 456
TspDTI	ATGAA	2 cut(s)	411, 604
TspGWI	ACGGA	1 cut(s)	89
Van91I	CCANNNNNTGG	1 cut(s)	121
VpaK11BI	GGWCC	1 cut(s)	4
XmnI	GAANNNNTTC	2 cut(s)	417, 466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.