Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004083.1

Orthogroup ID

OG0005084

Physical Location & Seq

Genomic Coordinates Reverse (-)

434 .. 4401

Gene Structure 3968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

atggaatgctcttcttcttcttcttcttcctcttcctcttctttaagcagcttttccatactgcgaaagccttgcccatttgtaccaccatttaccaccgtttataggaagcagcagcagcagcagcggcgaccccttatccaactctccgctgtttcttacaacaaattcattcacttcgctttggatgaatccaaacgccgcacccatttggccccttctcccctccaggaaagatataattccatggtttccatggatggtaatgcagaacttcaaatgtcatcattcaaagctactaagattaggcttttacgtagcctatgtattgagactcaaacaatgcaggttttggattttgctgtcttcccagaaccagaatttgatatgccaatattttgtgccaacttcttcaccagtgcggatgtcaacatagttgtgctggacctcaaccctttgcacaacgttattattgaaagagaatacagagataaatactacaaaggcctaatacctcttggtgtcaaatatgctgagcttttaccatggggtgggaagcttactagcgagtcattgaaatttttttcacccattgttatatggacaagatttacgtcaagtccagaaaaatatgaggttttatattcggctttcatggattattacaaggcatggctcgagctgatggaccaagcagtagtggagacaaatgcctctcaaattaaacgtaaccgtgaagcgcaacatcgatatctaacttggagagcagaaaaggatcttaaaatagatcttctctctgcaaaacagtgctattgtggaattcctaaagggatggtctaccttttatggaagttcattatctttaagctgtaccaaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0010019 GO:0016491 GO:0016627 GO:0016636 GO:0023052 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050619 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko00860 ko01110 map00860 map01110

Pfam Domains

Protein Families

Fe_bilin_red

Protein Analysis

293

Amino Acids

34.1

Weight (kDa)

9.15

Isoelectric Point (pI)

53.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fe_bilin_red	PF05996	65 - 265	3.1e-49	Ferredoxin-dependent bilin reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09150 AT3G09150 AT3G09150 AT3G09150
fragaria_vesca	FvH4_3g28130 FvH4_3g28130 FvH4_3g28130 FvH4_3g28130 FvH4_3g28130
malus_domestica	MD03G1169100.v1.1
prunus_persica	Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1
pyrus_communis	pycom03g12530
rosa_chinensis	RchiOBHm_Chr5g0050821
rosa_laevigata	RLG00000034741
rosa_multiflora	Rmu_sc0004083.1_g000001 Rmu_sc0007394.1_g000007 Rmu_sc0037809.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029890
rosa_rugosa	Rorug05G0264300.1 Rorug05G0264400.1
rosa_samantha	Rh5AG336300 Rh5BG345900 Rh5CG373600 Rh5DG358900
rosa_wichuraiana	Rw5G031720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	337
AccB7I	CCANNNNNTGG	1 cut(s)	551
AccI	GTMKAC	1 cut(s)	837
AciI	CCGC	4 cut(s)	127, 150, 202, 422
AclI	AACGTT	1 cut(s)	465
AclWI	GGATC	1 cut(s)	783
AcsI	RAATTY	4 cut(s)	167, 380, 578, 819
AfaI	GTAC	2 cut(s)	84, 872
AfiI	CCNNNNNNNGG	2 cut(s)	105, 551
AgsI	TTSAA	4 cut(s)	278, 292, 476, 577
AjnI	CCWGG	1 cut(s)	228
AluBI	AGCT	6 cut(s)	51, 296, 538, 559, 682, 868
AluI	AGCT	6 cut(s)	51, 296, 538, 559, 682, 868
Alw26I	GTCTC	2 cut(s)	326, 698
AlwI	GGATC	1 cut(s)	783
Ama87I	CYCGRG	1 cut(s)	677
AoxI	GGCC	2 cut(s)	213, 505
ApeKI	GCWGC	6 cut(s)	48, 112, 115, 118, 121, 124
ApoI	RAATTY	4 cut(s)	167, 380, 578, 819
AspLEI	GCGC	1 cut(s)	742
AspS9I	GGNCC	3 cut(s)	214, 445, 688
AsuHPI	GGTGA	2 cut(s)	406, 579
AvaI	CYCGRG	1 cut(s)	677
AvaII	GGWCC	2 cut(s)	445, 688
BbsI	GAAGAC	1 cut(s)	358
BbvI	GCAGC	6 cut(s)	60, 124, 127, 130, 133, 136
BccI	CCATC	3 cut(s)	254, 679, 826
BcgI	CGANNNNNNTGC	2 cut(s)	54, 88
BciT130I	CCWGG	1 cut(s)	230
BcoDI	GTCTC	2 cut(s)	326, 698
BfaI	CTAG	1 cut(s)	564
BfuAI	ACCTGC	1 cut(s)	337
BglII	AGATCT	1 cut(s)	787
BisI	GCNGC	8 cut(s)	49, 113, 116, 119, 122, 125, 128, 202
BlpI	GCTNAGC	1 cut(s)	534
BlsI	GCNGC	8 cut(s)	50, 114, 117, 120, 123, 126, 129, 203
Bme1390I	CCNGG	1 cut(s)	230
Bme18I	GGWCC	2 cut(s)	445, 688
BmeT110I	CYCGRG	1 cut(s)	677
BmgT120I	GGNCC	3 cut(s)	214, 445, 688
BmiI	GGNNCC	1 cut(s)	216
BmrFI	CCNGG	1 cut(s)	230
BpiI	GAAGAC	1 cut(s)	358
BpmI	CTGGAG	1 cut(s)	212
Bpu1102I	GCTNAGC	1 cut(s)	534
Bsa29I	ATCGAT	1 cut(s)	748
BsaAI	YACGTR	1 cut(s)	317
BsaJI	CCNNGG	3 cut(s)	246, 255, 545
Bsc4I	CCNNNNNNNGG	2 cut(s)	105, 551
Bse1I	ACTGG	1 cut(s)	417
BseBI	CCWGG	1 cut(s)	230
BseCI	ATCGAT	1 cut(s)	748
BseDI	CCNNGG	3 cut(s)	246, 255, 545
BseGI	GGATG	4 cut(s)	193, 265, 430, 837
BseLI	CCNNNNNNNGG	2 cut(s)	105, 551
BseMII	CTCAG	1 cut(s)	525
BseNI	ACTGG	1 cut(s)	417
BseXI	GCAGC	6 cut(s)	60, 124, 127, 130, 133, 136
BshFI	GGCC	2 cut(s)	215, 507
BshVI	ATCGAT	1 cut(s)	748
BsiHKCI	CYCGRG	1 cut(s)	677
BslI	CCNNNNNNNGG	2 cut(s)	105, 551
BsmAI	GTCTC	2 cut(s)	326, 698
BsmI	GAATGC	1 cut(s)	11
BsnI	GGCC	2 cut(s)	215, 507
BsoBI	CYCGRG	1 cut(s)	677
Bsp143I	GATC	2 cut(s)	775, 787
Bsp1720I	GCTNAGC	1 cut(s)	534
Bsp19I	CCATGG	3 cut(s)	246, 255, 545
BspACI	CCGC	4 cut(s)	127, 150, 202, 422
BspANI	GGCC	2 cut(s)	215, 507
BspCNI	CTCAG	1 cut(s)	526
BspDI	ATCGAT	1 cut(s)	748
BspLI	GGNNCC	1 cut(s)	216
BspMI	ACCTGC	1 cut(s)	337
BspPI	GGATC	1 cut(s)	783
BspQI	GCTCTTC	1 cut(s)	16
BsrI	ACTGG	1 cut(s)	417
BssECI	CCNNGG	3 cut(s)	246, 255, 545
BssMI	GATC	2 cut(s)	775, 787
BssT1I	CCWWGG	3 cut(s)	246, 255, 545
Bst2UI	CCWGG	1 cut(s)	230
Bst4CI	ACNGT	3 cut(s)	100, 734, 807
Bst6I	CTCTTC	3 cut(s)	16, 37, 43
BstBAI	YACGTR	1 cut(s)	317
BstDEI	CTNAG	2 cut(s)	300, 534
BstDSI	CCRYGG	3 cut(s)	246, 255, 545
BstF5I	GGATG	4 cut(s)	193, 265, 430, 837
BstHHI	GCGC	1 cut(s)	742
BstKTI	GATC	2 cut(s)	778, 790
BstMAI	GTCTC	2 cut(s)	326, 698
BstMBI	GATC	2 cut(s)	775, 787
BstMWI	GCNNNNNNNGC	4 cut(s)	118, 121, 124, 127
BstNI	CCWGG	1 cut(s)	230
BstSCI	CCNGG	1 cut(s)	228
BstSNI	TACGTA	1 cut(s)	317
BstV1I	GCAGC	6 cut(s)	60, 124, 127, 130, 133, 136
BstV2I	GAAGAC	1 cut(s)	358
BstX2I	RGATCY	2 cut(s)	775, 787
BstYI	RGATCY	2 cut(s)	775, 787
Bsu15I	ATCGAT	1 cut(s)	748
BsuRI	GGCC	2 cut(s)	215, 507
BsuTUI	ATCGAT	1 cut(s)	748
BtgI	CCRYGG	3 cut(s)	246, 255, 545
BtsCI	GGATG	4 cut(s)	193, 265, 430, 837
BtsIMutI	CAGTG	2 cut(s)	424, 812
BveI	ACCTGC	1 cut(s)	337
CfoI	GCGC	1 cut(s)	742
Cfr13I	GGNCC	3 cut(s)	214, 445, 688
ClaI	ATCGAT	1 cut(s)	748
Csp6I	GTAC	2 cut(s)	83, 871
CviAII	CATG	5 cut(s)	247, 256, 546, 655, 672
CviQI	GTAC	2 cut(s)	83, 871
DdeI	CTNAG	2 cut(s)	300, 534
DpnI	GATC	2 cut(s)	777, 789
DpnII	GATC	2 cut(s)	775, 787
Eam1104I	CTCTTC	3 cut(s)	16, 37, 43
EarI	CTCTTC	3 cut(s)	16, 37, 43
Eco105I	TACGTA	1 cut(s)	317
Eco130I	CCWWGG	3 cut(s)	246, 255, 545
Eco147I	AGGCCT	1 cut(s)	507
Eco32I	GATATC	1 cut(s)	752
Eco47I	GGWCC	2 cut(s)	445, 688
Eco88I	CYCGRG	1 cut(s)	677
EcoRI	GAATTC	1 cut(s)	819
EcoRII	CCWGG	1 cut(s)	228
EcoRV	GATATC	1 cut(s)	752
EcoT14I	CCWWGG	3 cut(s)	246, 255, 545
ErhI	CCWWGG	3 cut(s)	246, 255, 545
FaeI	CATG	5 cut(s)	250, 259, 549, 658, 675
FatI	CATG	5 cut(s)	246, 255, 545, 654, 671
FblI	GTMKAC	1 cut(s)	837
Fnu4HI	GCNGC	8 cut(s)	49, 113, 116, 119, 122, 125, 128, 202
FokI	GGATG	4 cut(s)	200, 272, 437, 844
Fsp4HI	GCNGC	8 cut(s)	49, 113, 116, 119, 122, 125, 128, 202
FspBI	CTAG	1 cut(s)	564
GlaI	GCGC	1 cut(s)	741
GluI	GCNGC	8 cut(s)	49, 113, 116, 119, 122, 125, 128, 202
GsuI	CTGGAG	1 cut(s)	212
HaeIII	GGCC	2 cut(s)	215, 507
HhaI	GCGC	1 cut(s)	742
Hin1II	CATG	5 cut(s)	250, 259, 549, 658, 675
Hin6I	GCGC	1 cut(s)	740
HinP1I	GCGC	1 cut(s)	740
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HindIII	AAGCTT	1 cut(s)	557
HinfI	GANTC	3 cut(s)	191, 334, 569
HphI	GGTGA	2 cut(s)	406, 579
Hpy166II	GTNNAC	2 cut(s)	430, 838
Hpy188III	TCNNGA	1 cut(s)	623
Hpy8I	GTNNAC	2 cut(s)	430, 838
HpyAV	CCTTC	1 cut(s)	228
HpyCH4III	ACNGT	3 cut(s)	100, 734, 807
HpyCH4IV	ACGT	4 cut(s)	316, 465, 614, 727
HpyCH4V	TGCA	4 cut(s)	269, 346, 460, 800
HpyF10VI	GCNNNNNNNGC	4 cut(s)	118, 121, 124, 127
HpyF3I	CTNAG	2 cut(s)	300, 534
HpySE526I	ACGT	4 cut(s)	316, 465, 614, 727
Hsp92II	CATG	5 cut(s)	250, 259, 549, 658, 675
HspAI	GCGC	1 cut(s)	740
Kzo9I	GATC	2 cut(s)	775, 787
LguI	GCTCTTC	1 cut(s)	16
LpnPI	CCDG	8 cut(s)	215, 242, 332, 384, 390, 428, 430, 636
Lsp1109I	GCAGC	6 cut(s)	60, 124, 127, 130, 133, 136
MaeI	CTAG	1 cut(s)	564
MaeII	ACGT	4 cut(s)	316, 465, 614, 727
MaeIII	GTNAC	1 cut(s)	728
MalI	GATC	2 cut(s)	777, 789
MboI	GATC	2 cut(s)	775, 787
MflI	RGATCY	2 cut(s)	775, 787
MluCI	AATT	6 cut(s)	167, 241, 380, 578, 720, 819
MlyI	GAGTC	2 cut(s)	328, 578
MmeI	TCCRAC	1 cut(s)	166
MnlI	CCTC	7 cut(s)	40, 46, 236, 458, 525, 628, 724
MseI	TTAA	4 cut(s)	44, 723, 780, 864
MslI	CAYNNNNRTG	1 cut(s)	437
MspA1I	CMGCKG	2 cut(s)	127, 152
MspR9I	CCNGG	1 cut(s)	230
Mva1269I	GAATGC	1 cut(s)	11
MvaI	CCWGG	1 cut(s)	230
MwoI	GCNNNNNNNGC	4 cut(s)	118, 121, 124, 127
NcoI	CCATGG	3 cut(s)	246, 255, 545
NdeII	GATC	2 cut(s)	775, 787
NlaIII	CATG	5 cut(s)	250, 259, 549, 658, 675
NlaIV	GGNNCC	1 cut(s)	216
PaeR7I	CTCGAG	1 cut(s)	677
PceI	AGGCCT	1 cut(s)	507
PciSI	GCTCTTC	1 cut(s)	16
PctI	GAATGC	1 cut(s)	11
PfeI	GAWTC	1 cut(s)	191
PflMI	CCANNNNNTGG	1 cut(s)	551
PfoI	TCCNGGA	1 cut(s)	228
PkrI	GCNGC	8 cut(s)	50, 114, 117, 120, 123, 126, 129, 203
PleI	GAGTC	2 cut(s)	328, 577
PpsI	GAGTC	2 cut(s)	328, 577
Ppu21I	YACGTR	1 cut(s)	317
Psp1406I	AACGTT	1 cut(s)	465
Psp6I	CCWGG	1 cut(s)	228
PspGI	CCWGG	1 cut(s)	228
PspN4I	GGNNCC	1 cut(s)	216
PspPI	GGNCC	3 cut(s)	214, 445, 688
PspXI	VCTCGAGB	1 cut(s)	677
PsuI	RGATCY	2 cut(s)	775, 787
RsaI	GTAC	2 cut(s)	84, 872
RsaNI	GTAC	2 cut(s)	83, 871
RseI	CAYNNNNRTG	1 cut(s)	437
SapI	GCTCTTC	1 cut(s)	16
SaqAI	TTAA	4 cut(s)	44, 723, 780, 864
SatI	GCNGC	8 cut(s)	49, 113, 116, 119, 122, 125, 128, 202
Sau3AI	GATC	2 cut(s)	775, 787
Sau96I	GGNCC	3 cut(s)	214, 445, 688
SchI	GAGTC	2 cut(s)	328, 578
ScrFI	CCNGG	1 cut(s)	230
Sfr274I	CTCGAG	1 cut(s)	677
SinI	GGWCC	2 cut(s)	445, 688
SlaI	CTCGAG	1 cut(s)	677
SmiMI	CAYNNNNRTG	1 cut(s)	437
SmlI	CTYRAG	1 cut(s)	677
SmoI	CTYRAG	1 cut(s)	677
SnaBI	TACGTA	1 cut(s)	317
Sse9I	AATT	6 cut(s)	167, 241, 380, 578, 720, 819
SseBI	AGGCCT	1 cut(s)	507
SsiI	CCGC	4 cut(s)	127, 150, 202, 422
SspI	AATATT	1 cut(s)	396
SspMI	CTAG	1 cut(s)	564
StuI	AGGCCT	1 cut(s)	507
StyD4I	CCNGG	1 cut(s)	228
StyI	CCWWGG	3 cut(s)	246, 255, 545
TaaI	ACNGT	3 cut(s)	100, 734, 807
TaiI	ACGT	4 cut(s)	319, 468, 617, 730
TaqI	TCGA	2 cut(s)	678, 748
TasI	AATT	6 cut(s)	167, 241, 380, 578, 720, 819
TauI	GCSGC	2 cut(s)	130, 204
TfiI	GAWTC	1 cut(s)	191
Tru1I	TTAA	4 cut(s)	44, 723, 780, 864
Tru9I	TTAA	4 cut(s)	44, 723, 780, 864
TscAI	CASTG	2 cut(s)	424, 812
TseI	GCWGC	6 cut(s)	48, 112, 115, 118, 121, 124
TspDTI	ATGAA	4 cut(s)	160, 204, 643, 844
TspRI	CASTG	2 cut(s)	424, 812
Van91I	CCANNNNNTGG	1 cut(s)	551
VpaK11BI	GGWCC	2 cut(s)	445, 688
XapI	RAATTY	4 cut(s)	167, 380, 578, 819
XcmI	CCANNNNNNNNNTGG	1 cut(s)	253
XhoI	CTCGAG	1 cut(s)	677
XmiI	GTMKAC	1 cut(s)	837
XspI	CTAG	1 cut(s)	564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.