Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004083.1

Orthogroup ID

OG0006556

Physical Location & Seq

Genomic Coordinates Reverse (-)

9047 .. 10730

Gene Structure 1684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

atgactcttgcgcccagtcgccaactttacccaacgagcttattggagagctccttccatggcacccacatccacttgttcaggtatggctcctcaattccttacaagaagcagagattccatgcaacccactactttatcagctctggtgagcaaaacccacccaggaaattgagtttgttgacttctcaatacaaacccaccaggaatttatctagttgtagttggattgatagatggaatgaatcccggaaacaaaatgggcccagggcgccgcgggccgtgttggactatcagagcaatgaaagtgggaatttgagtggttcaggcaatgatgggggtagtacaatggacaaaattgtggagaaattaaagaaatttgggtacattgcggcggataagaatgagggtaaaggtcaagggagggagagagtgatcgaaaaaggttctgtggaggatatattttatgttgaggaaggaatgttgccgaattctagaggtgggttctcggcagagtcgccattaggggtggagaatgtgtttggagatgatggtggtggtggtgaggtgaggtttccatgggaaaagcccatggagaaggagaagcaagaagacggttcggtcaggaggaggagtaggacttcactggcagaattgactcttcctgagtcagagctgaggaggctaaggaatatgacatttcagaagaagcacaagactaggattggaggtgctggtgttactcaagcagtagtggagatgattcatgagagatggaagacgtccgagattgtgagattgaaaatcgaaggtccacccgcactcaacatgaagagaatgcatgagatattggagcggaaaactggtggtttggtgatctggaggtctggcacatcgctttctttgtacagaggtgtgagctatgaagttccttccgtgcaactaagcaagcggatattcaagagaaatgaaatttcttcttcatcttcaccaactgtagctgataagtcagtggcggaaccttctgtgcttgcttcttatggtattgtaaagacaccctcagaagtgtcagagaatacatcccaggagaaggaagagacagaacaggtgccagaagtgaaatgcagacatgctcccagggatagttcctggtttccaaccgccattcagaatacttccttatggagtgcgatcaactcttggtttaaaagaggcaacatctttaagaaggcttgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009791 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRS1_YhbY

Protein Analysis

412

Amino Acids

46.35

Weight (kDa)

9.58

Isoelectric Point (pI)

58.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRS1_YhbY	PF01985	221 - 304	3.7e-20	CRS1 / YhbY (CRM) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006556)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23070
fragaria_vesca	FvH4_3g28120 FvH4_3g28120 FvH4_3g28120 FvH4_3g28120 FvH4_3g28120 FvH4_3g28120
malus_domestica	MD13G1206700.v1.1 MD16G1208000.v1.1
prunus_persica	Prupe.1G030300_v2.0.a1
pyrus_communis	pycom13g17910 pycom16g17530
rosa_chinensis	RchiOBHm_Chr5g0050811
rosa_laevigata	RLG00000034737 RLG00000034740
rosa_multiflora	Rmu_co8235889.1_g000001 Rmu_sc0004083.1_g000002 Rmu_sc0007394.1_g000006
rosa_roxburghii	Rroxscaffold_1G00029900 Rroxscaffold_1G00029910
rosa_rugosa	Rorug05G0264200.1
rosa_samantha	Rh5AG336200 Rh5BG345800 Rh5CG373500 Rh5DG358800
rosa_wichuraiana	Rw5G031710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	620
AatII	GACGTC	1 cut(s)	785
AccB1I	GGYRCC	3 cut(s)	62, 271, 1108
AccBSI	CCGCTC	1 cut(s)	856
AccII	CGCG	1 cut(s)	277
AciI	CCGC	9 cut(s)	275, 277, 392, 395, 819, 856, 952, 1016, 1161
AcsI	RAATTY	5 cut(s)	208, 313, 377, 490, 972
AcyI	GRCGYC	2 cut(s)	272, 782
AfaI	GTAC	3 cut(s)	346, 386, 908
AfiI	CCNNNNNNNGG	1 cut(s)	1090
AgsI	TTSAA	2 cut(s)	802, 961
AjnI	CCWGG	6 cut(s)	164, 203, 266, 1083, 1136, 1148
AluBI	AGCT	6 cut(s)	39, 51, 144, 676, 921, 1001
AluI	AGCT	6 cut(s)	39, 51, 144, 676, 921, 1001
Alw21I	GWGCWC	1 cut(s)	53
Alw26I	GTCTC	1 cut(s)	1091
AoxI	GGCC	2 cut(s)	263, 279
ApaI	GGGCCC	1 cut(s)	267
ApoI	RAATTY	5 cut(s)	208, 313, 377, 490, 972
AspLEI	GCGC	2 cut(s)	13, 274
AspS9I	GGNCC	4 cut(s)	263, 264, 279, 812
AsuC2I	CCSGG	1 cut(s)	250
AsuHPI	GGTGA	5 cut(s)	161, 575, 580, 886, 981
AvaII	GGWCC	1 cut(s)	812
BaeGI	GKGCMC	1 cut(s)	267
BanI	GGYRCC	3 cut(s)	62, 271, 1108
BanII	GRGCYC	2 cut(s)	53, 267
BbsI	GAAGAC	2 cut(s)	618, 785
Bbv12I	GWGCWC	1 cut(s)	53
BbvCI	CCTCAGC	1 cut(s)	677
BccI	CCATC	4 cut(s)	231, 329, 545, 768
BceAI	ACGGC	1 cut(s)	266
BciT130I	CCWGG	6 cut(s)	166, 205, 268, 1085, 1138, 1150
BcnI	CCSGG	1 cut(s)	250
BcoDI	GTCTC	1 cut(s)	1091
BfaI	CTAG	4 cut(s)	216, 495, 720, 1237
BfmI	CTRYAG	1 cut(s)	996
BfoI	RGCGCY	1 cut(s)	275
BisI	GCNGC	2 cut(s)	275, 393
BlsI	GCNGC	2 cut(s)	276, 394
Bme1390I	CCNGG	7 cut(s)	166, 205, 250, 268, 1085, 1138, 1150
Bme18I	GGWCC	1 cut(s)	812
BmgT120I	GGNCC	4 cut(s)	263, 264, 279, 812
BmiI	GGNNCC	6 cut(s)	64, 91, 265, 273, 1020, 1110
BmrFI	CCNGG	7 cut(s)	166, 205, 250, 268, 1085, 1138, 1150
BmrI	ACTGGG	1 cut(s)	9
BmuI	ACTGGG	1 cut(s)	9
BpiI	GAAGAC	2 cut(s)	618, 785
BpmI	CTGGAG	1 cut(s)	901
Bpu10I	CCTNAGC	2 cut(s)	677, 686
BpuEI	CTTGAG	1 cut(s)	729
BpuMI	CCSGG	1 cut(s)	250
BsaHI	GRCGYC	2 cut(s)	272, 782
BsaXI	ACNNNNNCTCC	4 cut(s)	524, 554, 619, 649
Bsc4I	CCNNNNNNNGG	1 cut(s)	1090
Bse1I	ACTGG	3 cut(s)	15, 651, 868
Bse3DI	GCAATG	3 cut(s)	307, 337, 387
BseBI	CCWGG	6 cut(s)	166, 205, 268, 1085, 1138, 1150
BseGI	GGATG	2 cut(s)	69, 1079
BseLI	CCNNNNNNNGG	1 cut(s)	1090
BseMI	GCAATG	3 cut(s)	307, 337, 387
BseMII	CTCAG	3 cut(s)	657, 668, 1074
BseNI	ACTGG	3 cut(s)	15, 651, 868
BseRI	GAGGAG	4 cut(s)	82, 643, 646, 694
BseSI	GKGCMC	1 cut(s)	267
Bsh1236I	CGCG	1 cut(s)	277
BshFI	GGCC	2 cut(s)	265, 281
BshNI	GGYRCC	3 cut(s)	62, 271, 1108
BsiHKAI	GWGCWC	1 cut(s)	53
BsiSI	CCGG	1 cut(s)	250
BslI	CCNNNNNNNGG	1 cut(s)	1090
BsmAI	GTCTC	1 cut(s)	1091
BsmI	GAATGC	1 cut(s)	843
BsnI	GGCC	2 cut(s)	265, 281
Bsp120I	GGGCCC	1 cut(s)	263
Bsp1286I	GDGCHC	2 cut(s)	53, 267
Bsp1407I	TGTACA	1 cut(s)	906
Bsp143I	GATC	3 cut(s)	435, 876, 1191
Bsp19I	CCATGG	3 cut(s)	58, 578, 591
BspACI	CCGC	9 cut(s)	275, 277, 392, 395, 819, 856, 952, 1016, 1161
BspANI	GGCC	2 cut(s)	265, 281
BspCNI	CTCAG	3 cut(s)	658, 669, 1073
BspFNI	CGCG	1 cut(s)	277
BspHI	TCATGA	1 cut(s)	766
BspLI	GGNNCC	6 cut(s)	64, 91, 265, 273, 1020, 1110
BspT107I	GGYRCC	3 cut(s)	62, 271, 1108
BsrBI	CCGCTC	1 cut(s)	856
BsrDI	GCAATG	3 cut(s)	307, 337, 387
BsrGI	TGTACA	1 cut(s)	906
BsrI	ACTGG	3 cut(s)	15, 651, 868
BssMI	GATC	3 cut(s)	435, 876, 1191
BssNI	GRCGYC	2 cut(s)	272, 782
BssT1I	CCWWGG	3 cut(s)	58, 578, 591
Bst2UI	CCWGG	6 cut(s)	166, 205, 268, 1085, 1138, 1150
Bst4CI	ACNGT	2 cut(s)	617, 997
Bst6I	CTCTTC	3 cut(s)	666, 827, 1089
BstACI	GRCGYC	2 cut(s)	272, 782
BstAUI	TGTACA	1 cut(s)	906
BstC8I	GCNNGC	4 cut(s)	279, 950, 1032, 1234
BstDEI	CTNAG	5 cut(s)	666, 677, 686, 944, 1060
BstDSI	CCRYGG	4 cut(s)	58, 275, 578, 591
BstF5I	GGATG	2 cut(s)	69, 1079
BstFNI	CGCG	1 cut(s)	277
BstH2I	RGCGCY	1 cut(s)	275
BstHHI	GCGC	2 cut(s)	13, 274
BstKTI	GATC	3 cut(s)	438, 879, 1194
BstMAI	GTCTC	1 cut(s)	1091
BstMBI	GATC	3 cut(s)	435, 876, 1191
BstMWI	GCNNNNNNNGC	3 cut(s)	271, 278, 682
BstNI	CCWGG	6 cut(s)	166, 205, 268, 1085, 1138, 1150
BstNSI	RCATGY	1 cut(s)	1133
BstSCI	CCNGG	7 cut(s)	164, 203, 248, 266, 1083, 1136, 1148
BstSFI	CTRYAG	1 cut(s)	996
BstSLI	GKGCMC	1 cut(s)	267
BstUI	CGCG	1 cut(s)	277
BstV2I	GAAGAC	2 cut(s)	618, 785
BsuRI	GGCC	2 cut(s)	265, 281
BtgI	CCRYGG	4 cut(s)	58, 275, 578, 591
BtgZI	GCGATG	1 cut(s)	879
BtsCI	GGATG	2 cut(s)	69, 1079
BtsIMutI	CAGTG	2 cut(s)	644, 1017
Cac8I	GCNNGC	4 cut(s)	279, 950, 1032, 1234
CciI	TCATGA	1 cut(s)	766
CfoI	GCGC	2 cut(s)	13, 274
Cfr13I	GGNCC	4 cut(s)	263, 264, 279, 812
Cfr42I	CCGCGG	1 cut(s)	278
Csp6I	GTAC	3 cut(s)	345, 385, 907
CspCI	CAANNNNNGTGG	2 cut(s)	289, 324
CviAII	CATG	8 cut(s)	59, 122, 579, 592, 767, 829, 842, 1130
CviQI	GTAC	3 cut(s)	345, 385, 907
DdeI	CTNAG	5 cut(s)	666, 677, 686, 944, 1060
DinI	GGCGCC	1 cut(s)	273
DpnI	GATC	3 cut(s)	437, 878, 1193
DpnII	GATC	3 cut(s)	435, 876, 1191
DraI	TTTAAA	1 cut(s)	1207
DrdI	GACNNNNNNGTC	1 cut(s)	620
DseDI	GACNNNNNNGTC	1 cut(s)	620
Eam1104I	CTCTTC	3 cut(s)	666, 827, 1089
EarI	CTCTTC	3 cut(s)	666, 827, 1089
EciI	GGCGGA	2 cut(s)	410, 1031
Ecl136II	GAGCTC	1 cut(s)	51
Eco130I	CCWWGG	3 cut(s)	58, 578, 591
Eco24I	GRGCYC	2 cut(s)	53, 267
Eco47I	GGWCC	1 cut(s)	812
Eco53kI	GAGCTC	1 cut(s)	51
EcoICRI	GAGCTC	1 cut(s)	51
EcoRI	GAATTC	1 cut(s)	490
EcoRII	CCWGG	6 cut(s)	164, 203, 266, 1083, 1136, 1148
EcoT14I	CCWWGG	3 cut(s)	58, 578, 591
EcoT22I	ATGCAT	1 cut(s)	843
EcoT38I	GRGCYC	2 cut(s)	53, 267
EgeI	GGCGCC	1 cut(s)	273
EheI	GGCGCC	1 cut(s)	273
ErhI	CCWWGG	3 cut(s)	58, 578, 591
FaeI	CATG	8 cut(s)	62, 125, 582, 595, 770, 832, 845, 1133
FatI	CATG	8 cut(s)	58, 121, 578, 591, 766, 828, 841, 1129
FauI	CCCGC	2 cut(s)	270, 826
Fnu4HI	GCNGC	2 cut(s)	275, 393
FokI	GGATG	2 cut(s)	56, 1066
FriOI	GRGCYC	2 cut(s)	53, 267
Fsp4HI	GCNGC	2 cut(s)	275, 393
FspBI	CTAG	4 cut(s)	216, 495, 720, 1237
GlaI	GCGC	2 cut(s)	12, 273
GluI	GCNGC	2 cut(s)	275, 393
GsuI	CTGGAG	1 cut(s)	901
HaeII	RGCGCY	1 cut(s)	275
HaeIII	GGCC	2 cut(s)	265, 281
HapII	CCGG	1 cut(s)	250
HhaI	GCGC	2 cut(s)	13, 274
Hin1I	GRCGYC	2 cut(s)	272, 782
Hin1II	CATG	8 cut(s)	62, 125, 582, 595, 770, 832, 845, 1133
Hin6I	GCGC	2 cut(s)	11, 272
HinP1I	GCGC	2 cut(s)	11, 272
HincII	GTYRAC	1 cut(s)	183
HindII	GTYRAC	1 cut(s)	183
HinfI	GANTC	7 cut(s)	4, 117, 245, 515, 658, 668, 763
HpaII	CCGG	1 cut(s)	250
HphI	GGTGA	5 cut(s)	161, 575, 580, 886, 981
Hpy166II	GTNNAC	2 cut(s)	183, 815
Hpy188I	TCNGA	7 cut(s)	297, 673, 705, 787, 1063, 1072, 1170
Hpy188III	TCNNGA	6 cut(s)	495, 625, 665, 767, 880, 961
Hpy8I	GTNNAC	2 cut(s)	183, 815
HpyAV	CCTTC	8 cut(s)	64, 470, 592, 803, 942, 1032, 1084, 1222
HpyCH4III	ACNGT	2 cut(s)	617, 997
HpyCH4IV	ACGT	1 cut(s)	782
HpyCH4V	TGCA	4 cut(s)	125, 841, 940, 1125
HpyF10VI	GCNNNNNNNGC	3 cut(s)	271, 278, 682
HpyF3I	CTNAG	5 cut(s)	666, 677, 686, 944, 1060
HpySE526I	ACGT	1 cut(s)	782
Hsp92I	GRCGYC	2 cut(s)	272, 782
Hsp92II	CATG	8 cut(s)	62, 125, 582, 595, 770, 832, 845, 1133
HspAI	GCGC	2 cut(s)	11, 272
KasI	GGCGCC	1 cut(s)	271
KspI	CCGCGG	1 cut(s)	278
Kzo9I	GATC	3 cut(s)	435, 876, 1191
LmnI	GCTCC	4 cut(s)	56, 95, 853, 1138
MaeI	CTAG	4 cut(s)	216, 495, 720, 1237
MaeII	ACGT	1 cut(s)	782
MaeIII	GTNAC	1 cut(s)	739
MalI	GATC	3 cut(s)	437, 878, 1193
MbiI	CCGCTC	1 cut(s)	856
MboI	GATC	3 cut(s)	435, 876, 1191
MboII	GAAGA	9 cut(s)	623, 653, 718, 790, 844, 969, 972, 978, 1106
MhlI	GDGCHC	2 cut(s)	53, 267
Mly113I	GGCGCC	1 cut(s)	272
MlyI	GAGTC	3 cut(s)	524, 652, 677
MmeI	TCCRAC	3 cut(s)	206, 267, 1181
Mph1103I	ATGCAT	1 cut(s)	843
MseI	TTAA	3 cut(s)	371, 1206, 1224
MspA1I	CMGCKG	1 cut(s)	277
MspI	CCGG	1 cut(s)	250
MspR9I	CCNGG	7 cut(s)	166, 205, 250, 268, 1085, 1138, 1150
Mva1269I	GAATGC	1 cut(s)	843
MvaI	CCWGG	6 cut(s)	166, 205, 268, 1085, 1138, 1150
MvnI	CGCG	1 cut(s)	277
MwoI	GCNNNNNNNGC	3 cut(s)	271, 278, 682
NarI	GGCGCC	1 cut(s)	272
NciI	CCSGG	1 cut(s)	250
NcoI	CCATGG	3 cut(s)	58, 578, 591
NdeII	GATC	3 cut(s)	435, 876, 1191
NlaIII	CATG	8 cut(s)	62, 125, 582, 595, 770, 832, 845, 1133
NlaIV	GGNNCC	6 cut(s)	64, 91, 265, 273, 1020, 1110
NmeAIII	GCCGAG	1 cut(s)	488
NsiI	ATGCAT	1 cut(s)	843
NspI	RCATGY	1 cut(s)	1133
PagI	TCATGA	1 cut(s)	766
PasI	CCCWGGG	2 cut(s)	267, 1137
PctI	GAATGC	1 cut(s)	843
PfeI	GAWTC	3 cut(s)	117, 245, 763
PfoI	TCCNGGA	1 cut(s)	248
PkrI	GCNGC	2 cut(s)	276, 394
PleI	GAGTC	3 cut(s)	523, 652, 676
PluTI	GGCGCC	1 cut(s)	275
PpsI	GAGTC	3 cut(s)	523, 652, 676
Psp124BI	GAGCTC	1 cut(s)	53
Psp6I	CCWGG	6 cut(s)	164, 203, 266, 1083, 1136, 1148
PspGI	CCWGG	6 cut(s)	164, 203, 266, 1083, 1136, 1148
PspN4I	GGNNCC	6 cut(s)	64, 91, 265, 273, 1020, 1110
PspOMI	GGGCCC	1 cut(s)	263
PspPI	GGNCC	4 cut(s)	263, 264, 279, 812
RsaI	GTAC	3 cut(s)	346, 386, 908
RsaNI	GTAC	3 cut(s)	345, 385, 907
SacI	GAGCTC	1 cut(s)	53
SacII	CCGCGG	1 cut(s)	278
SaqAI	TTAA	3 cut(s)	371, 1206, 1224
SatI	GCNGC	2 cut(s)	275, 393
Sau3AI	GATC	3 cut(s)	435, 876, 1191
Sau96I	GGNCC	4 cut(s)	263, 264, 279, 812
SchI	GAGTC	3 cut(s)	524, 652, 677
ScrFI	CCNGG	7 cut(s)	166, 205, 250, 268, 1085, 1138, 1150
SduI	GDGCHC	2 cut(s)	53, 267
SfcI	CTRYAG	1 cut(s)	996
SfoI	GGCGCC	1 cut(s)	273
Sfr303I	CCGCGG	1 cut(s)	278
SgrBI	CCGCGG	1 cut(s)	278
SinI	GGWCC	1 cut(s)	812
SmlI	CTYRAG	1 cut(s)	744
SmoI	CTYRAG	1 cut(s)	744
SsiI	CCGC	9 cut(s)	275, 277, 392, 395, 819, 856, 952, 1016, 1161
SspDI	GGCGCC	1 cut(s)	271
SspMI	CTAG	4 cut(s)	216, 495, 720, 1237
SstI	GAGCTC	1 cut(s)	53
StyD4I	CCNGG	7 cut(s)	164, 203, 248, 266, 1083, 1136, 1148
StyI	CCWWGG	3 cut(s)	58, 578, 591
TaaI	ACNGT	2 cut(s)	617, 997
TaiI	ACGT	1 cut(s)	785
TaqI	TCGA	2 cut(s)	438, 807
TaqII	GACCGA	1 cut(s)	610
TatI	WGTACW	2 cut(s)	344, 906
TauI	GCSGC	2 cut(s)	277, 395
TfiI	GAWTC	3 cut(s)	117, 245, 763
Tru1I	TTAA	3 cut(s)	371, 1206, 1224
Tru9I	TTAA	3 cut(s)	371, 1206, 1224
TscAI	CASTG	2 cut(s)	651, 1017
TspDTI	ATGAA	7 cut(s)	258, 318, 755, 845, 939, 972, 984
TspGWI	ACGGA	1 cut(s)	925
TspRI	CASTG	2 cut(s)	651, 1017
VpaK11BI	GGWCC	1 cut(s)	812
XapI	RAATTY	5 cut(s)	208, 313, 377, 490, 972
XbaI	TCTAGA	1 cut(s)	494
XceI	RCATGY	1 cut(s)	1133
XspI	CTAG	4 cut(s)	216, 495, 720, 1237
ZraI	GACGTC	1 cut(s)	783
Zsp2I	ATGCAT	1 cut(s)	843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.