Rmu_sc0004132.1_g000006

signal peptidase complex subunit 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004132.1
OG0009961
Physical Location & Seq
Reverse (-)
26023 .. 27691
1669 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 405 bp
atggccaaccacgccgtgttcaggtcctctctggtttggttagcgctagttctcgtggttgttgggatttgcactcagtctttgaagaagatcatggtgacttacctggttggtgtgatcggaatcgggggtgtgcttttacctgattgggactactttgaccgggatttttcccggtggagttctccggttacggttgaggaaagggcctctgcgattgcaactgctgaaagatctggattagcaaggttatccctcaataccacaacacttgcaaactctcacactctctctctctctctctccatcggccggcaacaattgcagtccccgtctctcgagaatcgcaggttcttaaacaggagggaagcaacactctgtactgctggctactgccctctgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SPC12

Protein Analysis

134

Amino Acids

14.74

Weight (kDa)

9.35

Isoelectric Point (pI)

59.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPC12 PF06645 8 - 63 4.3e-07 Microsomal signal peptidase 12 kDa subunit (SPC12)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 339
AcoI YGGCCR 2 cut(s) 3, 310
AdeI CACNNNGTG 1 cut(s) 16
AfaI GTAC 1 cut(s) 382
AfeI AGCGCT 1 cut(s) 45
AfiI CCNNNNNNNGG 2 cut(s) 21, 312
AgsI TTSAA 1 cut(s) 85
AjnI CCWGG 1 cut(s) 105
Alw26I GTCTC 1 cut(s) 339
Ama87I CYCGRG 1 cut(s) 338
Aor51HI AGCGCT 1 cut(s) 45
AoxI GGCC 3 cut(s) 3, 207, 310
AspLEI GCGC 1 cut(s) 46
AspS9I GGNCC 2 cut(s) 24, 207
AsuC2I CCSGG 2 cut(s) 164, 175
AsuHPI GGTGA 1 cut(s) 109
AvaI CYCGRG 1 cut(s) 338
AvaII GGWCC 1 cut(s) 24
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 1 cut(s) 53
BccI CCATC 1 cut(s) 314
BciT130I CCWGG 1 cut(s) 107
BcnI CCSGG 2 cut(s) 164, 175
BcoDI GTCTC 1 cut(s) 339
BfaI CTAG 1 cut(s) 47
BfmI CTRYAG 1 cut(s) 401
BfoI RGCGCY 1 cut(s) 47
BfuAI ACCTGC 1 cut(s) 339
BglII AGATCT 1 cut(s) 233
Bme1390I CCNGG 3 cut(s) 107, 164, 175
Bme18I GGWCC 1 cut(s) 24
BmeT110I CYCGRG 1 cut(s) 338
BmgT120I GGNCC 2 cut(s) 24, 207
BmrFI CCNGG 3 cut(s) 107, 164, 175
BpuMI CCSGG 2 cut(s) 164, 175
BsaBI GATNNNNATC 1 cut(s) 122
BsaWI WCCGGW 1 cut(s) 187
Bsc4I CCNNNNNNNGG 2 cut(s) 21, 312
Bse118I RCCGGY 1 cut(s) 312
Bse8I GATNNNNATC 1 cut(s) 122
BseBI CCWGG 1 cut(s) 107
BseJI GATNNNNATC 1 cut(s) 122
BseLI CCNNNNNNNGG 2 cut(s) 21, 312
BseMII CTCAG 1 cut(s) 89
BseX3I CGGCCG 1 cut(s) 310
Bsh1285I CGRYCG 1 cut(s) 313
BshFI GGCC 3 cut(s) 5, 209, 312
BsiEI CGRYCG 1 cut(s) 313
BsiHKCI CYCGRG 1 cut(s) 338
BsiSI CCGG 4 cut(s) 163, 175, 188, 313
BslFI GGGAC 2 cut(s) 164, 313
BslI CCNNNNNNNGG 2 cut(s) 21, 312
BsmAI GTCTC 1 cut(s) 339
BsmBI CGTCTC 1 cut(s) 339
BsmFI GGGAC 2 cut(s) 164, 313
BsnI GGCC 3 cut(s) 5, 209, 312
BsoBI CYCGRG 1 cut(s) 338
Bsp143I GATC 3 cut(s) 90, 117, 233
BspANI GGCC 3 cut(s) 5, 209, 312
BspCNI CTCAG 1 cut(s) 88
BspMI ACCTGC 1 cut(s) 339
BsrFI RCCGGY 1 cut(s) 312
BssAI RCCGGY 1 cut(s) 312
BssMI GATC 3 cut(s) 90, 117, 233
BssSI CACGAG 1 cut(s) 53
Bst2BI CACGAG 1 cut(s) 53
Bst2UI CCWGG 1 cut(s) 107
Bst4CI ACNGT 1 cut(s) 196
BstAPI GCANNNNNTGC 1 cut(s) 322
BstC8I GCNNGC 2 cut(s) 314, 388
BstDEI CTNAG 1 cut(s) 75
BstH2I RGCGCY 1 cut(s) 47
BstHHI GCGC 1 cut(s) 46
BstKTI GATC 3 cut(s) 93, 120, 236
BstMAI GTCTC 1 cut(s) 339
BstMBI GATC 3 cut(s) 90, 117, 233
BstMCI CGRYCG 1 cut(s) 313
BstMWI GCNNNNNNNGC 2 cut(s) 11, 322
BstNI CCWGG 1 cut(s) 107
BstSCI CCNGG 3 cut(s) 105, 162, 173
BstSFI CTRYAG 1 cut(s) 401
BstX2I RGATCY 1 cut(s) 233
BstYI RGATCY 1 cut(s) 233
BstZI CGGCCG 1 cut(s) 310
BsuRI GGCC 3 cut(s) 5, 209, 312
BveI ACCTGC 1 cut(s) 339
Cac8I GCNNGC 2 cut(s) 314, 388
CfoI GCGC 1 cut(s) 46
Cfr10I RCCGGY 1 cut(s) 312
Cfr13I GGNCC 2 cut(s) 24, 207
CsiI ACCWGGT 1 cut(s) 105
Csp6I GTAC 1 cut(s) 381
CspCI CAANNNNNGTGG 2 cut(s) 253, 288
CviAII CATG 1 cut(s) 94
CviJI RGCY 4 cut(s) 5, 209, 312, 390
CviKI_1 RGCY 4 cut(s) 5, 209, 312, 390
CviQI GTAC 1 cut(s) 381
DdeI CTNAG 1 cut(s) 75
DpnI GATC 3 cut(s) 92, 119, 235
DpnII GATC 3 cut(s) 90, 117, 233
DraIII CACNNNGTG 1 cut(s) 16
EaeI YGGCCR 2 cut(s) 3, 310
EagI CGGCCG 1 cut(s) 310
EclXI CGGCCG 1 cut(s) 310
Eco47I GGWCC 1 cut(s) 24
Eco47III AGCGCT 1 cut(s) 45
Eco52I CGGCCG 1 cut(s) 310
Eco88I CYCGRG 1 cut(s) 338
EcoO109I RGGNCCY 2 cut(s) 24, 207
EcoRII CCWGG 1 cut(s) 105
Esp3I CGTCTC 1 cut(s) 339
FaeI CATG 1 cut(s) 97
FaiI YATR 1 cut(s) 95
FaqI GGGAC 2 cut(s) 164, 313
FatI CATG 1 cut(s) 93
FspBI CTAG 1 cut(s) 47
GlaI GCGC 1 cut(s) 45
HaeII RGCGCY 1 cut(s) 47
HaeIII GGCC 3 cut(s) 5, 209, 312
HapII CCGG 4 cut(s) 163, 175, 188, 313
HhaI GCGC 1 cut(s) 46
Hin1II CATG 1 cut(s) 97
Hin6I GCGC 1 cut(s) 44
HinP1I GCGC 1 cut(s) 44
HinfI GANTC 2 cut(s) 123, 343
HpaII CCGG 4 cut(s) 163, 175, 188, 313
HphI GGTGA 1 cut(s) 109
Hpy188I TCNGA 1 cut(s) 122
Hpy188III TCNNGA 3 cut(s) 237, 338, 340
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4V TGCA 4 cut(s) 72, 221, 275, 325
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 322
HpyF3I CTNAG 1 cut(s) 75
Hsp92II CATG 1 cut(s) 97
HspAI GCGC 1 cut(s) 44
KroI GCCGGC 1 cut(s) 312
KroNI GCCGGC 1 cut(s) 314
Kzo9I GATC 3 cut(s) 90, 117, 233
MabI ACCWGGT 1 cut(s) 105
MaeI CTAG 1 cut(s) 47
MaeIII GTNAC 2 cut(s) 97, 190
MalI GATC 3 cut(s) 92, 119, 235
MboI GATC 3 cut(s) 90, 117, 233
MboII GAAGA 2 cut(s) 97, 100
MfeI CAATTG 1 cut(s) 320
MflI RGATCY 1 cut(s) 233
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 320
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 5 cut(s) 37, 193, 220, 266, 357
Mox20I TGGCCA 1 cut(s) 5
MroNI GCCGGC 1 cut(s) 312
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 356
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 4 cut(s) 163, 175, 188, 313
MspR9I CCNGG 3 cut(s) 107, 164, 175
MunI CAATTG 1 cut(s) 320
MvaI CCWGG 1 cut(s) 107
MwoI GCNNNNNNNGC 2 cut(s) 11, 322
NaeI GCCGGC 1 cut(s) 314
NciI CCSGG 2 cut(s) 164, 175
NdeII GATC 3 cut(s) 90, 117, 233
NgoMIV GCCGGC 1 cut(s) 312
NlaIII CATG 1 cut(s) 97
NmuCI GTSAC 1 cut(s) 97
PaeR7I CTCGAG 1 cut(s) 338
PdiI GCCGGC 1 cut(s) 314
PfeI GAWTC 2 cut(s) 123, 343
PpuMI RGGWCCY 1 cut(s) 24
Psp5II RGGWCCY 1 cut(s) 24
Psp6I CCWGG 1 cut(s) 105
PspGI CCWGG 1 cut(s) 105
PspPI GGNCC 2 cut(s) 24, 207
PspPPI RGGWCCY 1 cut(s) 24
PsuI RGATCY 1 cut(s) 233
RsaI GTAC 1 cut(s) 382
RsaNI GTAC 1 cut(s) 381
SaqAI TTAA 1 cut(s) 356
Sau3AI GATC 3 cut(s) 90, 117, 233
Sau96I GGNCC 2 cut(s) 24, 207
ScrFI CCNGG 3 cut(s) 107, 164, 175
SetI ASST 5 cut(s) 26, 108, 145, 251, 353
SexAI ACCWGGT 1 cut(s) 105
SfcI CTRYAG 1 cut(s) 401
Sfr274I CTCGAG 1 cut(s) 338
SinI GGWCC 1 cut(s) 24
SlaI CTCGAG 1 cut(s) 338
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
Sse9I AATT 1 cut(s) 320
SspMI CTAG 1 cut(s) 47
StyD4I CCNGG 3 cut(s) 105, 162, 173
TaaI ACNGT 1 cut(s) 196
TaqI TCGA 1 cut(s) 339
TasI AATT 1 cut(s) 320
TatI WGTACW 1 cut(s) 380
TfiI GAWTC 2 cut(s) 123, 343
Tru1I TTAA 1 cut(s) 356
Tru9I TTAA 1 cut(s) 356
TseFI GTSAC 1 cut(s) 97
Tsp45I GTSAC 1 cut(s) 97
VpaK11BI GGWCC 1 cut(s) 24
XhoI CTCGAG 1 cut(s) 338
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.