Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004442.1

Orthogroup ID

OG0005352

Physical Location & Seq

Genomic Coordinates Reverse (-)

308 .. 3427

Gene Structure 3120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004442.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

atggttgttcatagagacctgaagccagaaaatttgcttttggattccaaatgcaatgtgaagattgctgattttggcctaagcaatattatgcgtgatggccattttcttaagacaagttgtggcagcccaaattatgctgctccagaggttatttctggtaaactatatgctggacccgaagtagatgtatggagttgtggagtgatattatatgctcttctttgtggtactcttccttttgacgatgagaacattcccaacttgttcaagaaaattaagggcgggatatacactcttccaagccatttatcacctggtgcaagggacttaatcccaagaatgctcgtggtggatccaatgaagcgaatgaccatccctgagattcgtcagcatccatggttccaggctcatcttcctcgttacttagctgtgcccccaccagatacaatgcagcaagcgaagaagattgatgaagaaatcttacaggaagtagtgaagatgggatttgacaggaaccatctggttgaatctctgcgtggtagattacaaaatgagggaaccgttgcatactatttattattggacaaccggtttcgtgtatccagtggctatcttggggccgagtttcaggagactgtggaatctggtttcaaccgtatgcatcaaagtgagcctgcttcttcacctgttgggcaccgccttccaggatatatggagtatcaaggaatgggctcttcaccttttagacaacagtttcctgttgaaaggaaatgggctcttggacttcagtctcgggctcatcctcgtgaaataatgaccgaagtccttaaagctttacaagaattgcgggtgtgttggaagaagataggacactacaacatgaagtgtaggtgggttcctggcactcctggtcaacatgaaggcatggttgacaatcctgtaaacaataaccattattttggggacgaatccagcatcatagaaaatgatggtgttatgaagacgcccaatgttgtcaagtttgaagtgcagcttttcaaaactcgggaggagaagtatctgcttgatctgcagagggtccagggtccgcagtttctcttcctggatctctgtgccgctttccttgcacagcttcgtgttctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0007584 GO:0008150 GO:0008152 GO:0009593 GO:0009594 GO:0009605 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009743 GO:0009755 GO:0009756 GO:0009791 GO:0009987 GO:0009991 GO:0010033 GO:0010050 GO:0010150 GO:0010182 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023052 GO:0031667 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051606 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071322 GO:0071396 GO:0071495 GO:0071704 GO:0080022 GO:0090693 GO:0097305 GO:0097306 GO:0099402 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

KA1 Pkinase UBA

Protein Analysis

382

Amino Acids

43.52

Weight (kDa)

7.65

Isoelectric Point (pI)

52.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01090 AT3G01090 AT3G01090 AT3G29160 AT3G29160 AT3G29160 AT5G39440
fragaria_vesca	FvH4_6g47850 FvH4_6g47850 FvH4_6g47850 FvH4_6g47850 FvH4_6g47850
malus_domestica	MD09G1056200.v1.1 MD17G1053700.v1.1
prunus_persica	Prupe.3G262900_v2.0.a1 Prupe.3G262900_v2.0.a1 Prupe.3G262900_v2.0.a1
pyrus_communis	pycom17g05140
rosa_chinensis	RchiOBHm_Chr2g0167051
rosa_laevigata	RLG00000021692
rosa_multiflora	Rmu_sc0004442.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083770
rosa_rugosa	Rorug02G0528000 Rorug02G0528100
rosa_samantha	Rh2AG594900 Rh2BG606200 Rh2CG577000 Rh2DG617700
rosa_wichuraiana	Rw2G049520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	696
AciI	CCGC	5 cut(s)	285, 700, 850, 1091, 1119
AclWI	GGATC	3 cut(s)	350, 363, 1116
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	1 cut(s)	31
AcuI	CTGAAG	2 cut(s)	41, 773
AcyI	GRCGYC	1 cut(s)	1007
AdeI	CACNNNGTG	1 cut(s)	320
AfaI	GTAC	1 cut(s)	232
AflII	CTTAAG	1 cut(s)	110
AgeI	ACCGGT	1 cut(s)	591
AgsI	TTSAA	6 cut(s)	271, 530, 655, 767, 1028, 1042
AjnI	CCWGG	7 cut(s)	316, 405, 706, 901, 910, 1083, 1104
AluBI	AGCT	4 cut(s)	431, 836, 1036, 1135
AluI	AGCT	4 cut(s)	431, 836, 1036, 1135
Alw26I	GTCTC	3 cut(s)	9, 629, 798
AlwI	GGATC	3 cut(s)	350, 363, 1116
Ama87I	CYCGRG	2 cut(s)	795, 1047
AoxI	GGCC	3 cut(s)	76, 100, 621
ApeKI	GCWGC	4 cut(s)	126, 140, 454, 1033
ApoI	RAATTY	1 cut(s)	31
AsiGI	ACCGGT	1 cut(s)	591
AspS9I	GGNCC	4 cut(s)	176, 621, 1081, 1088
AsuHPI	GGTGA	3 cut(s)	306, 678, 732
AvaI	CYCGRG	2 cut(s)	795, 1047
AvaII	GGWCC	3 cut(s)	176, 1081, 1088
BaeGI	GKGCMC	2 cut(s)	438, 699
BalI	TGGCCA	1 cut(s)	102
BamHI	GGATCC	1 cut(s)	355
BanI	GGYRCC	1 cut(s)	696
BanII	GRGCYC	3 cut(s)	737, 781, 802
BarI	GAAGNNNNNNTAC	2 cut(s)	468, 500
BauI	CACGAG	2 cut(s)	347, 807
BbsI	GAAGAC	1 cut(s)	1010
BbvI	GCAGC	4 cut(s)	127, 138, 466, 1045
BccI	CCATC	5 cut(s)	92, 383, 496, 528, 986
BciT130I	CCWGG	7 cut(s)	318, 407, 708, 903, 912, 1085, 1106
BciVI	GTATCC	1 cut(s)	613
BcoDI	GTCTC	3 cut(s)	9, 629, 798
BfmI	CTRYAG	1 cut(s)	1073
BfrI	CTTAAG	1 cut(s)	110
BfuI	GTATCC	1 cut(s)	613
BisI	GCNGC	5 cut(s)	127, 141, 455, 1034, 1119
BlsI	GCNGC	5 cut(s)	128, 142, 456, 1035, 1120
Bme1390I	CCNGG	7 cut(s)	318, 407, 708, 903, 912, 1085, 1106
Bme18I	GGWCC	3 cut(s)	176, 1081, 1088
BmeT110I	CYCGRG	2 cut(s)	795, 1047
BmgT120I	GGNCC	4 cut(s)	176, 621, 1081, 1088
BmrFI	CCNGG	7 cut(s)	318, 407, 708, 903, 912, 1085, 1106
BmsI	GCATC	3 cut(s)	403, 673, 987
BoxI	GACNNNNGTC	2 cut(s)	790, 824
BpiI	GAAGAC	1 cut(s)	1010
BpmI	CTGGAG	1 cut(s)	129
Bpu10I	CCTNAGC	1 cut(s)	80
BsaHI	GRCGYC	1 cut(s)	1007
BsaI	GGTCTC	1 cut(s)	9
BsaJI	CCNNGG	2 cut(s)	398, 1084
BsaWI	WCCGGW	1 cut(s)	591
BsaXI	ACNNNNNCTCC	2 cut(s)	1043, 1073
Bse118I	RCCGGY	1 cut(s)	591
Bse1I	ACTGG	1 cut(s)	606
Bse3DI	GCAATG	1 cut(s)	61
BseBI	CCWGG	7 cut(s)	318, 407, 708, 903, 912, 1085, 1106
BseDI	CCNNGG	2 cut(s)	398, 1084
BseGI	GGATG	3 cut(s)	375, 394, 802
BseMI	GCAATG	1 cut(s)	61
BseMII	CTCAG	1 cut(s)	372
BseNI	ACTGG	1 cut(s)	606
BseRI	GAGGAG	1 cut(s)	1067
BseSI	GKGCMC	2 cut(s)	438, 699
BseXI	GCAGC	4 cut(s)	127, 138, 466, 1045
BsgI	GTGCAG	1 cut(s)	1052
BshFI	GGCC	3 cut(s)	78, 102, 623
BshNI	GGYRCC	1 cut(s)	696
BshTI	ACCGGT	1 cut(s)	591
BsiHKCI	CYCGRG	2 cut(s)	795, 1047
BsiSI	CCGG	1 cut(s)	592
BslFI	GGGAC	2 cut(s)	341, 980
BsmAI	GTCTC	3 cut(s)	9, 629, 798
BsmFI	GGGAC	2 cut(s)	341, 980
BsmI	GAATGC	1 cut(s)	348
BsnI	GGCC	3 cut(s)	78, 102, 623
Bso31I	GGTCTC	1 cut(s)	9
BsoBI	CYCGRG	2 cut(s)	795, 1047
Bsp1286I	GDGCHC	5 cut(s)	438, 699, 737, 781, 802
Bsp143I	GATC	3 cut(s)	355, 1069, 1108
Bsp19I	CCATGG	1 cut(s)	398
BspACI	CCGC	5 cut(s)	285, 700, 850, 1091, 1119
BspANI	GGCC	3 cut(s)	78, 102, 623
BspCNI	CTCAG	1 cut(s)	373
BspMAI	CTGCAG	1 cut(s)	1077
BspPI	GGATC	3 cut(s)	350, 363, 1116
BspQI	GCTCTTC	2 cut(s)	225, 742
BspT107I	GGYRCC	1 cut(s)	696
BspTI	CTTAAG	1 cut(s)	110
BspTNI	GGTCTC	1 cut(s)	9
BsrDI	GCAATG	1 cut(s)	61
BsrFI	RCCGGY	1 cut(s)	591
BsrI	ACTGG	1 cut(s)	606
BssAI	RCCGGY	1 cut(s)	591
BssECI	CCNNGG	2 cut(s)	398, 1084
BssMI	GATC	3 cut(s)	355, 1069, 1108
BssNI	GRCGYC	1 cut(s)	1007
BssSI	CACGAG	2 cut(s)	347, 807
BssT1I	CCWWGG	1 cut(s)	398
Bst2BI	CACGAG	2 cut(s)	347, 807
Bst2UI	CCWGG	7 cut(s)	318, 407, 708, 903, 912, 1085, 1106
Bst4CI	ACNGT	4 cut(s)	565, 640, 659, 756
Bst6I	CTCTTC	5 cut(s)	225, 240, 303, 742, 1106
BstACI	GRCGYC	1 cut(s)	1007
BstAFI	CTTAAG	1 cut(s)	110
BstC8I	GCNNGC	2 cut(s)	459, 678
BstDEI	CTNAG	3 cut(s)	80, 381, 427
BstDSI	CCRYGG	1 cut(s)	398
BstF5I	GGATG	3 cut(s)	375, 394, 802
BstKTI	GATC	3 cut(s)	358, 1072, 1111
BstMAI	GTCTC	3 cut(s)	9, 629, 798
BstMBI	GATC	3 cut(s)	355, 1069, 1108
BstMWI	GCNNNNNNNGC	2 cut(s)	1072, 1127
BstNI	CCWGG	7 cut(s)	318, 407, 708, 903, 912, 1085, 1106
BstPAI	GACNNNNGTC	2 cut(s)	790, 824
BstSCI	CCNGG	7 cut(s)	316, 405, 706, 901, 910, 1083, 1104
BstSFI	CTRYAG	1 cut(s)	1073
BstSLI	GKGCMC	2 cut(s)	438, 699
BstV1I	GCAGC	4 cut(s)	127, 138, 466, 1045
BstV2I	GAAGAC	1 cut(s)	1010
BstX2I	RGATCY	2 cut(s)	355, 1108
BstXI	CCANNNNNNTGG	1 cut(s)	962
BstYI	RGATCY	2 cut(s)	355, 1108
BsuI	GTATCC	1 cut(s)	613
BsuRI	GGCC	3 cut(s)	78, 102, 623
BtgI	CCRYGG	1 cut(s)	398
BtsCI	GGATG	3 cut(s)	375, 394, 802
BtsIMutI	CAGTG	1 cut(s)	613
Cac8I	GCNNGC	2 cut(s)	459, 678
Cfr10I	RCCGGY	1 cut(s)	591
Cfr13I	GGNCC	4 cut(s)	176, 621, 1081, 1088
CseI	GACGC	1 cut(s)	1015
CsiI	ACCWGGT	1 cut(s)	316
Csp6I	GTAC	1 cut(s)	231
CspAI	ACCGGT	1 cut(s)	591
CviAII	CATG	4 cut(s)	399, 883, 920, 928
CviQI	GTAC	1 cut(s)	231
DdeI	CTNAG	3 cut(s)	80, 381, 427
DpnI	GATC	3 cut(s)	357, 1071, 1110
DpnII	GATC	3 cut(s)	355, 1069, 1108
DraIII	CACNNNGTG	1 cut(s)	320
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	5 cut(s)	225, 240, 303, 742, 1106
EarI	CTCTTC	5 cut(s)	225, 240, 303, 742, 1106
Eco130I	CCWWGG	1 cut(s)	398
Eco24I	GRGCYC	3 cut(s)	737, 781, 802
Eco31I	GGTCTC	1 cut(s)	9
Eco47I	GGWCC	3 cut(s)	176, 1081, 1088
Eco57I	CTGAAG	2 cut(s)	41, 773
Eco88I	CYCGRG	2 cut(s)	795, 1047
EcoRII	CCWGG	7 cut(s)	316, 405, 706, 901, 910, 1083, 1104
EcoT14I	CCWWGG	1 cut(s)	398
EcoT22I	ATGCAT	1 cut(s)	666
EcoT38I	GRGCYC	3 cut(s)	737, 781, 802
ErhI	CCWWGG	1 cut(s)	398
FaeI	CATG	4 cut(s)	402, 886, 923, 931
FalI	AAGNNNNNCTT	2 cut(s)	1020, 1052
FaqI	GGGAC	2 cut(s)	341, 980
FatI	CATG	4 cut(s)	398, 882, 919, 927
FauI	CCCGC	2 cut(s)	278, 843
Fnu4HI	GCNGC	5 cut(s)	127, 141, 455, 1034, 1119
FokI	GGATG	3 cut(s)	362, 381, 789
FriOI	GRGCYC	3 cut(s)	737, 781, 802
Fsp4HI	GCNGC	5 cut(s)	127, 141, 455, 1034, 1119
GluI	GCNGC	5 cut(s)	127, 141, 455, 1034, 1119
GsuI	CTGGAG	1 cut(s)	129
HaeIII	GGCC	3 cut(s)	78, 102, 623
HapII	CCGG	1 cut(s)	592
HgaI	GACGC	1 cut(s)	1015
Hin1I	GRCGYC	1 cut(s)	1007
Hin1II	CATG	4 cut(s)	402, 886, 923, 931
HincII	GTYRAC	2 cut(s)	917, 934
HindII	GTYRAC	2 cut(s)	917, 934
HindIII	AAGCTT	1 cut(s)	834
HinfI	GANTC	5 cut(s)	44, 385, 530, 644, 971
HpaII	CCGG	1 cut(s)	592
HphI	GGTGA	3 cut(s)	306, 678, 732
Hpy166II	GTNNAC	4 cut(s)	164, 917, 934, 946
Hpy188III	TCNNGA	5 cut(s)	146, 271, 632, 809, 1049
Hpy8I	GTNNAC	4 cut(s)	164, 917, 934, 946
HpyAV	CCTTC	2 cut(s)	713, 917
HpyCH4III	ACNGT	4 cut(s)	565, 640, 659, 756
HpyCH4V	TGCA	8 cut(s)	54, 323, 454, 569, 664, 1033, 1075, 1130
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1072, 1127
HpyF3I	CTNAG	3 cut(s)	80, 381, 427
Hsp92I	GRCGYC	1 cut(s)	1007
Hsp92II	CATG	4 cut(s)	402, 886, 923, 931
Kzo9I	GATC	3 cut(s)	355, 1069, 1108
LguI	GCTCTTC	2 cut(s)	225, 742
LmnI	GCTCC	1 cut(s)	148
Lsp1109I	GCAGC	4 cut(s)	127, 138, 466, 1045
LweI	GCATC	3 cut(s)	403, 673, 987
MabI	ACCWGGT	1 cut(s)	316
MaeIII	GTNAC	1 cut(s)	422
MalI	GATC	3 cut(s)	357, 1071, 1110
MboI	GATC	3 cut(s)	355, 1069, 1108
MflI	RGATCY	2 cut(s)	355, 1108
MhlI	GDGCHC	5 cut(s)	438, 699, 737, 781, 802
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	4 cut(s)	31, 133, 276, 845
MluNI	TGGCCA	1 cut(s)	102
MmeI	TCCRAC	1 cut(s)	839
MnlI	CCTC	6 cut(s)	142, 429, 550, 816, 1045, 1071
Mox20I	TGGCCA	1 cut(s)	102
Mph1103I	ATGCAT	1 cut(s)	666
MscI	TGGCCA	1 cut(s)	102
MseI	TTAA	5 cut(s)	111, 279, 332, 831, 1147
MslI	CAYNNNNRTG	2 cut(s)	669, 807
Msp20I	TGGCCA	1 cut(s)	102
MspCI	CTTAAG	1 cut(s)	110
MspI	CCGG	1 cut(s)	592
MspR9I	CCNGG	7 cut(s)	318, 407, 708, 903, 912, 1085, 1106
Mva1269I	GAATGC	1 cut(s)	348
MvaI	CCWGG	7 cut(s)	318, 407, 708, 903, 912, 1085, 1106
MwoI	GCNNNNNNNGC	2 cut(s)	1072, 1127
NcoI	CCATGG	1 cut(s)	398
NdeII	GATC	3 cut(s)	355, 1069, 1108
NlaIII	CATG	4 cut(s)	402, 886, 923, 931
NmeAIII	GCCGAG	1 cut(s)	649
NsiI	ATGCAT	1 cut(s)	666
PciSI	GCTCTTC	2 cut(s)	225, 742
PctI	GAATGC	1 cut(s)	348
PfeI	GAWTC	5 cut(s)	44, 385, 530, 644, 971
PfoI	TCCNGGA	2 cut(s)	706, 1104
PinAI	ACCGGT	1 cut(s)	591
PkrI	GCNGC	5 cut(s)	128, 142, 456, 1035, 1120
PshAI	GACNNNNGTC	2 cut(s)	790, 824
Psp6I	CCWGG	7 cut(s)	316, 405, 706, 901, 910, 1083, 1104
PspGI	CCWGG	7 cut(s)	316, 405, 706, 901, 910, 1083, 1104
PspPI	GGNCC	4 cut(s)	176, 621, 1081, 1088
PstI	CTGCAG	1 cut(s)	1077
PsuI	RGATCY	2 cut(s)	355, 1108
RsaI	GTAC	1 cut(s)	232
RsaNI	GTAC	1 cut(s)	231
RseI	CAYNNNNRTG	2 cut(s)	669, 807
SapI	GCTCTTC	2 cut(s)	225, 742
SaqAI	TTAA	5 cut(s)	111, 279, 332, 831, 1147
SatI	GCNGC	5 cut(s)	127, 141, 455, 1034, 1119
Sau3AI	GATC	3 cut(s)	355, 1069, 1108
Sau96I	GGNCC	4 cut(s)	176, 621, 1081, 1088
ScrFI	CCNGG	7 cut(s)	318, 407, 708, 903, 912, 1085, 1106
SduI	GDGCHC	5 cut(s)	438, 699, 737, 781, 802
SexAI	ACCWGGT	1 cut(s)	316
SfaNI	GCATC	3 cut(s)	403, 673, 987
SfcI	CTRYAG	1 cut(s)	1073
SinI	GGWCC	3 cut(s)	176, 1081, 1088
SmiMI	CAYNNNNRTG	2 cut(s)	669, 807
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	4 cut(s)	31, 133, 276, 845
SsiI	CCGC	5 cut(s)	285, 700, 850, 1091, 1119
SspI	AATATT	1 cut(s)	88
StyD4I	CCNGG	7 cut(s)	316, 405, 706, 901, 910, 1083, 1104
StyI	CCWWGG	1 cut(s)	398
TaaI	ACNGT	4 cut(s)	565, 640, 659, 756
TaqII	GACCGA	1 cut(s)	836
TasI	AATT	4 cut(s)	31, 133, 276, 845
TauI	GCSGC	1 cut(s)	1121
TfiI	GAWTC	5 cut(s)	44, 385, 530, 644, 971
Tru1I	TTAA	5 cut(s)	111, 279, 332, 831, 1147
Tru9I	TTAA	5 cut(s)	111, 279, 332, 831, 1147
TscAI	CASTG	1 cut(s)	613
TseI	GCWGC	4 cut(s)	126, 140, 454, 1033
TspDTI	ATGAA	5 cut(s)	377, 489, 899, 936, 1016
TspRI	CASTG	1 cut(s)	613
Vha464I	CTTAAG	1 cut(s)	110
VpaK11BI	GGWCC	3 cut(s)	176, 1081, 1088
XapI	RAATTY	1 cut(s)	31
XcmI	CCANNNNNNNNNTGG	1 cut(s)	314
Zsp2I	ATGCAT	1 cut(s)	666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.