Rh2AG594900

SNF1-related protein kinase catalytic subunit alpha

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0005352
Physical Location & Seq
Forward (+)
82541246 .. 82547083
5838 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG594900.1

Sequence Viewer

Length: 1140 bp
ATGGATGGACCGGTTGGCCGTGGAGGCAGCAGCGCAGATGCATATTTACCGAATTACAAGCTTGGAAAAACTCTTGGTATTGGTTCTTTTGGCAAGGTCAAAATTGCAGAGCATGCATTAACTGGCCACAAAGTGGCTATCAAGATCCTTAACCGGCGCAAGATAAAGAACATGGAAATGGAAGAGAAAGTGAGAAGAGAAATCAAAATATTAAGACTGTTTATGCACCCTCACATTATACGACTCTATGAGGTCATTGAAACACCATCGGACATTTATGTTGTGATGGAGTATGTAAAGTCTGGGGAGCTTTTTGATTATATAGTAGAGAAGGGTAGGCTACAGGAGGATGAAGCTCGTAACTTTTTTCAGCAGATAATATCTGGCGTGGAGTACTGTCACAGGAATATGGTCGTTCATAGAGACCTGAAGCCAGAAAATTTGCTTTTGGATTCCAAATGCAATGTGAAGATTGCTGATTTTGGCCTAAGCAATATTATGCGTGATGGCCATTTTCTTAAGACAAGTTGTGGCAGCCCAAATTATGCTGCTCCAGAGGTTATTTCTGGCAAACTATATGCTGGGCCCGAAGTAGATGTATGGAGTTGTGGAGTGATATTATATGCTCTTCTTTGTGGTACTCTTCCTTTTGACGATGAGAACATTCCCAACTTGTTCAAGAAAATTAAGGGCGGGATATACACTCTTCCAAGCCATTTATCACCTGGTGCAAGGGACTTAATCCCAAGAATGCTTGTGGTGGATCCAATGAAGCGAATGACCATCCCTGAGATTCGTCAGCATCCATGGTTCCAGGCTCATCTTCCTCGTTACTTAGCTGTGCCCCCACCGGATACAATGCAGCAAGCGAAGAAGATTGATGAAGAAATCTTACAGGAAGTAGTGAAGATGGGATTTGACAGGAACCATCTGGTTGAATCTCTGCGTGGTAGATTACAAAATGAGGGAACCGTTGCATACTATTTATTATTGGACAACAGGTTTCGTGTATCCAGTGGCTATCTTGGGGCCGAGTTTCAGGAGACTGTGGTATGTGCTCTTTCGCTCTCTCTTCTTGATGTAGTAGCAACCATGTGGTTGGAAAATAAAATATTATCTCTTCATGTCCAAGGCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0007584 GO:0008150 GO:0008152 GO:0009593 GO:0009594 GO:0009605 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009743 GO:0009755 GO:0009756 GO:0009791 GO:0009987 GO:0009991 GO:0010033 GO:0010050 GO:0010150 GO:0010182 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023052 GO:0031667 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051606 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071322 GO:0071396 GO:0071495 GO:0071704 GO:0080022 GO:0090693 GO:0097305 GO:0097306 GO:0099402 GO:0140096 GO:1901564 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418
Pfam Domains
Protein Families
KA1 Pkinase UBA

Protein Analysis

379

Amino Acids

42.96

Weight (kDa)

8.1

Isoelectric Point (pI)

40.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 19 - 271 2.1e-83 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 20 - 267 1.8e-41 Protein tyrosine and serine/threonine kinase
Kinase-like PF14531 119 - 220 3.8e-07 Kinase-like
UBA PF00627 293 - 329 1.4e-07 UBA/TS-N domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 133
AciI CCGC 1 cut(s) 693
AclWI GGATC 3 cut(s) 139, 758, 771
AcoI YGGCCR 3 cut(s) 16, 124, 508
AcsI RAATTY 1 cut(s) 439
AcuI CTGAAG 1 cut(s) 449
AdeI CACNNNGTG 2 cut(s) 133, 728
AfaI GTAC 2 cut(s) 395, 640
AfiI CCNNNNNNNGG 1 cut(s) 133
AflII CTTAAG 1 cut(s) 518
AgeI ACCGGT 1 cut(s) 10
AgsI TTSAA 3 cut(s) 260, 679, 938
AjnI CCWGG 2 cut(s) 724, 813
AluBI AGCT 4 cut(s) 61, 310, 356, 839
AluI AGCT 4 cut(s) 61, 310, 356, 839
Alw21I GWGCWC 1 cut(s) 1060
Alw26I GTCTC 2 cut(s) 417, 1037
AlwI GGATC 3 cut(s) 139, 758, 771
AoxI GGCC 6 cut(s) 16, 124, 484, 508, 584, 1029
ApaI GGGCCC 1 cut(s) 588
ApeKI GCWGC 5 cut(s) 27, 30, 534, 548, 862
ApoI RAATTY 1 cut(s) 439
AsiGI ACCGGT 1 cut(s) 10
AspLEI GCGC 2 cut(s) 35, 159
AspS9I GGNCC 4 cut(s) 8, 584, 585, 1029
AsuHPI GGTGA 1 cut(s) 714
AvaII GGWCC 1 cut(s) 8
BaeGI GKGCMC 2 cut(s) 588, 846
BalI TGGCCA 2 cut(s) 126, 510
BamHI GGATCC 1 cut(s) 763
BanII GRGCYC 1 cut(s) 588
BarI GAAGNNNNNNTAC 2 cut(s) 876, 908
Bbv12I GWGCWC 1 cut(s) 1060
BbvI GCAGC 5 cut(s) 39, 42, 535, 546, 874
BccI CCATC 6 cut(s) 274, 280, 500, 791, 904, 936
BceAI ACGGC 1 cut(s) 3
BciT130I CCWGG 2 cut(s) 726, 815
BciVI GTATCC 2 cut(s) 847, 1021
BcoDI GTCTC 2 cut(s) 417, 1037
BfmI CTRYAG 1 cut(s) 341
BfrI CTTAAG 1 cut(s) 518
BfuI GTATCC 2 cut(s) 847, 1021
BglI GCCNNNNNGGC 1 cut(s) 24
BisI GCNGC 5 cut(s) 28, 31, 535, 549, 863
BlsI GCNGC 5 cut(s) 29, 32, 536, 550, 864
BmcAI AGTACT 1 cut(s) 395
Bme1390I CCNGG 2 cut(s) 726, 815
Bme18I GGWCC 1 cut(s) 8
BmgT120I GGNCC 4 cut(s) 8, 584, 585, 1029
BmiI GGNNCC 6 cut(s) 586, 765, 812, 926, 970, 1030
BmrFI CCNGG 2 cut(s) 726, 815
BmsI GCATC 2 cut(s) 28, 811
BpmI CTGGAG 1 cut(s) 537
Bpu10I CCTNAGC 1 cut(s) 488
BsaI GGTCTC 1 cut(s) 417
BsaJI CCNNGG 3 cut(s) 19, 806, 1129
BsaWI WCCGGW 2 cut(s) 10, 850
Bsc4I CCNNNNNNNGG 1 cut(s) 133
Bse118I RCCGGY 2 cut(s) 10, 153
Bse1I ACTGG 2 cut(s) 127, 1014
Bse3DI GCAATG 1 cut(s) 469
BseBI CCWGG 2 cut(s) 726, 815
BseDI CCNNGG 3 cut(s) 19, 806, 1129
BseGI GGATG 4 cut(s) 10, 355, 783, 802
BseLI CCNNNNNNNGG 1 cut(s) 133
BseMI GCAATG 1 cut(s) 469
BseMII CTCAG 1 cut(s) 780
BseNI ACTGG 2 cut(s) 127, 1014
BseSI GKGCMC 2 cut(s) 588, 846
BseXI GCAGC 5 cut(s) 39, 42, 535, 546, 874
BseYI CCCAGC 1 cut(s) 581
BshFI GGCC 6 cut(s) 18, 126, 486, 510, 586, 1031
BshTI ACCGGT 1 cut(s) 10
BsiHKAI GWGCWC 1 cut(s) 1060
BsiSI CCGG 3 cut(s) 11, 154, 851
BslFI GGGAC 1 cut(s) 749
BslI CCNNNNNNNGG 1 cut(s) 133
BsmAI GTCTC 2 cut(s) 417, 1037
BsmFI GGGAC 1 cut(s) 749
BsmI GAATGC 1 cut(s) 756
BsnI GGCC 6 cut(s) 18, 126, 486, 510, 586, 1031
Bso31I GGTCTC 1 cut(s) 417
Bsp120I GGGCCC 1 cut(s) 584
Bsp1286I GDGCHC 3 cut(s) 588, 846, 1060
Bsp143I GATC 2 cut(s) 144, 763
Bsp19I CCATGG 1 cut(s) 806
BspACI CCGC 1 cut(s) 693
BspANI GGCC 6 cut(s) 18, 126, 486, 510, 586, 1031
BspCNI CTCAG 1 cut(s) 781
BspLI GGNNCC 6 cut(s) 586, 765, 812, 926, 970, 1030
BspPI GGATC 3 cut(s) 139, 758, 771
BspQI GCTCTTC 1 cut(s) 633
BspTI CTTAAG 1 cut(s) 518
BspTNI GGTCTC 1 cut(s) 417
BsrDI GCAATG 1 cut(s) 469
BsrFI RCCGGY 2 cut(s) 10, 153
BsrI ACTGG 2 cut(s) 127, 1014
BssAI RCCGGY 2 cut(s) 10, 153
BssECI CCNNGG 3 cut(s) 19, 806, 1129
BssMI GATC 2 cut(s) 144, 763
BssT1I CCWWGG 2 cut(s) 806, 1129
Bst2UI CCWGG 2 cut(s) 726, 815
Bst4CI ACNGT 4 cut(s) 219, 398, 973, 1048
Bst6I CTCTTC 7 cut(s) 177, 190, 633, 648, 711, 1077, 1125
BstAFI CTTAAG 1 cut(s) 518
BstAPI GCANNNNNTGC 1 cut(s) 113
BstC8I GCNNGC 2 cut(s) 114, 867
BstDEI CTNAG 3 cut(s) 488, 789, 835
BstDSI CCRYGG 2 cut(s) 19, 806
BstF5I GGATG 4 cut(s) 10, 355, 783, 802
BstHHI GCGC 2 cut(s) 35, 159
BstKTI GATC 2 cut(s) 147, 766
BstMAI GTCTC 2 cut(s) 417, 1037
BstMBI GATC 2 cut(s) 144, 763
BstMWI GCNNNNNNNGC 2 cut(s) 24, 113
BstNI CCWGG 2 cut(s) 726, 815
BstNSI RCATGY 1 cut(s) 116
BstSCI CCNGG 2 cut(s) 724, 813
BstSFI CTRYAG 1 cut(s) 341
BstSLI GKGCMC 2 cut(s) 588, 846
BstV1I GCAGC 5 cut(s) 39, 42, 535, 546, 874
BstX2I RGATCY 2 cut(s) 144, 763
BstXI CCANNNNNNTGG 1 cut(s) 1099
BstYI RGATCY 2 cut(s) 144, 763
BsuI GTATCC 2 cut(s) 847, 1021
BsuRI GGCC 6 cut(s) 18, 126, 486, 510, 586, 1031
BtgI CCRYGG 2 cut(s) 19, 806
BtsCI GGATG 4 cut(s) 10, 355, 783, 802
BtsIMutI CAGTG 1 cut(s) 1021
Cac8I GCNNGC 2 cut(s) 114, 867
CfoI GCGC 2 cut(s) 35, 159
Cfr10I RCCGGY 2 cut(s) 10, 153
Cfr13I GGNCC 4 cut(s) 8, 584, 585, 1029
CsiI ACCWGGT 1 cut(s) 724
Csp6I GTAC 2 cut(s) 394, 639
CspAI ACCGGT 1 cut(s) 10
CviAII CATG 5 cut(s) 113, 172, 807, 1093, 1124
CviQI GTAC 2 cut(s) 394, 639
DdeI CTNAG 3 cut(s) 488, 789, 835
DpnI GATC 2 cut(s) 146, 765
DpnII GATC 2 cut(s) 144, 763
DraIII CACNNNGTG 2 cut(s) 133, 728
EaeI YGGCCR 3 cut(s) 16, 124, 508
Eam1104I CTCTTC 7 cut(s) 177, 190, 633, 648, 711, 1077, 1125
EarI CTCTTC 7 cut(s) 177, 190, 633, 648, 711, 1077, 1125
Eco130I CCWWGG 2 cut(s) 806, 1129
Eco24I GRGCYC 1 cut(s) 588
Eco31I GGTCTC 1 cut(s) 417
Eco47I GGWCC 1 cut(s) 8
Eco57I CTGAAG 1 cut(s) 449
EcoRII CCWGG 2 cut(s) 724, 813
EcoT14I CCWWGG 2 cut(s) 806, 1129
EcoT22I ATGCAT 2 cut(s) 43, 118
EcoT38I GRGCYC 1 cut(s) 588
ErhI CCWWGG 2 cut(s) 806, 1129
FaeI CATG 5 cut(s) 116, 175, 810, 1096, 1127
FaqI GGGAC 1 cut(s) 749
FatI CATG 5 cut(s) 112, 171, 806, 1092, 1123
FauI CCCGC 1 cut(s) 686
Fnu4HI GCNGC 5 cut(s) 28, 31, 535, 549, 863
FokI GGATG 4 cut(s) 17, 362, 770, 789
FriOI GRGCYC 1 cut(s) 588
Fsp4HI GCNGC 5 cut(s) 28, 31, 535, 549, 863
GlaI GCGC 2 cut(s) 34, 158
GluI GCNGC 5 cut(s) 28, 31, 535, 549, 863
GsaI CCCAGC 1 cut(s) 585
GsuI CTGGAG 1 cut(s) 537
HaeIII GGCC 6 cut(s) 18, 126, 486, 510, 586, 1031
HapII CCGG 3 cut(s) 11, 154, 851
HhaI GCGC 2 cut(s) 35, 159
Hin1II CATG 5 cut(s) 116, 175, 810, 1096, 1127
Hin6I GCGC 2 cut(s) 33, 157
HinP1I GCGC 2 cut(s) 33, 157
HindIII AAGCTT 1 cut(s) 59
HinfI GANTC 4 cut(s) 243, 452, 793, 938
HpaII CCGG 3 cut(s) 11, 154, 851
HphI GGTGA 1 cut(s) 714
Hpy188I TCNGA 1 cut(s) 271
Hpy188III TCNNGA 5 cut(s) 142, 554, 679, 1040, 1076
HpyAV CCTTC 1 cut(s) 325
HpyCH4III ACNGT 4 cut(s) 219, 398, 973, 1048
HpyCH4V TGCA 8 cut(s) 41, 107, 116, 226, 462, 731, 862, 977
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 113
HpyF3I CTNAG 3 cut(s) 488, 789, 835
Hsp92II CATG 5 cut(s) 116, 175, 810, 1096, 1127
HspAI GCGC 2 cut(s) 33, 157
Kzo9I GATC 2 cut(s) 144, 763
LguI GCTCTTC 1 cut(s) 633
LmnI GCTCC 2 cut(s) 307, 556
Lsp1109I GCAGC 5 cut(s) 39, 42, 535, 546, 874
LweI GCATC 2 cut(s) 28, 811
MabI ACCWGGT 1 cut(s) 724
MaeIII GTNAC 3 cut(s) 359, 398, 830
MalI GATC 2 cut(s) 146, 765
MboI GATC 2 cut(s) 144, 763
MflI RGATCY 2 cut(s) 144, 763
MhlI GDGCHC 3 cut(s) 588, 846, 1060
MlsI TGGCCA 2 cut(s) 126, 510
MluCI AATT 5 cut(s) 52, 102, 439, 541, 684
MluNI TGGCCA 2 cut(s) 126, 510
MlyI GAGTC 1 cut(s) 237
MmeI TCCRAC 1 cut(s) 1080
MnlI CCTC 7 cut(s) 17, 240, 244, 340, 550, 837, 958
Mox20I TGGCCA 2 cut(s) 126, 510
Mph1103I ATGCAT 2 cut(s) 43, 118
MscI TGGCCA 2 cut(s) 126, 510
MseI TTAA 6 cut(s) 119, 150, 212, 519, 687, 740
MslI CAYNNNNRTG 1 cut(s) 176
Msp20I TGGCCA 2 cut(s) 126, 510
MspCI CTTAAG 1 cut(s) 518
MspI CCGG 3 cut(s) 11, 154, 851
MspR9I CCNGG 2 cut(s) 726, 815
Mva1269I GAATGC 1 cut(s) 756
MvaI CCWGG 2 cut(s) 726, 815
MwoI GCNNNNNNNGC 2 cut(s) 24, 113
NcoI CCATGG 1 cut(s) 806
NdeII GATC 2 cut(s) 144, 763
NlaIII CATG 5 cut(s) 116, 175, 810, 1096, 1127
NlaIV GGNNCC 6 cut(s) 586, 765, 812, 926, 970, 1030
NmeAIII GCCGAG 1 cut(s) 1057
NmuCI GTSAC 1 cut(s) 398
NsiI ATGCAT 2 cut(s) 43, 118
NspI RCATGY 1 cut(s) 116
PaeI GCATGC 1 cut(s) 116
PciSI GCTCTTC 1 cut(s) 633
PctI GAATGC 1 cut(s) 756
PfeI GAWTC 3 cut(s) 452, 793, 938
PflMI CCANNNNNTGG 1 cut(s) 133
PinAI ACCGGT 1 cut(s) 10
PkrI GCNGC 5 cut(s) 29, 32, 536, 550, 864
PleI GAGTC 1 cut(s) 237
PpsI GAGTC 1 cut(s) 237
Psp6I CCWGG 2 cut(s) 724, 813
PspFI CCCAGC 1 cut(s) 581
PspGI CCWGG 2 cut(s) 724, 813
PspN4I GGNNCC 6 cut(s) 586, 765, 812, 926, 970, 1030
PspOMI GGGCCC 1 cut(s) 584
PspPI GGNCC 4 cut(s) 8, 584, 585, 1029
PsuI RGATCY 2 cut(s) 144, 763
RsaI GTAC 2 cut(s) 395, 640
RsaNI GTAC 2 cut(s) 394, 639
RseI CAYNNNNRTG 1 cut(s) 176
SapI GCTCTTC 1 cut(s) 633
SaqAI TTAA 6 cut(s) 119, 150, 212, 519, 687, 740
SatI GCNGC 5 cut(s) 28, 31, 535, 549, 863
Sau3AI GATC 2 cut(s) 144, 763
Sau96I GGNCC 4 cut(s) 8, 584, 585, 1029
ScaI AGTACT 1 cut(s) 395
SchI GAGTC 1 cut(s) 237
ScrFI CCNGG 2 cut(s) 726, 815
SduI GDGCHC 3 cut(s) 588, 846, 1060
SexAI ACCWGGT 1 cut(s) 724
SfaNI GCATC 2 cut(s) 28, 811
SfcI CTRYAG 1 cut(s) 341
SinI GGWCC 1 cut(s) 8
SmiMI CAYNNNNRTG 1 cut(s) 176
SmlI CTYRAG 1 cut(s) 518
SmoI CTYRAG 1 cut(s) 518
SphI GCATGC 1 cut(s) 116
Sse9I AATT 5 cut(s) 52, 102, 439, 541, 684
SsiI CCGC 1 cut(s) 693
SspI AATATT 3 cut(s) 210, 496, 1113
StyD4I CCNGG 2 cut(s) 724, 813
StyI CCWWGG 2 cut(s) 806, 1129
TaaI ACNGT 4 cut(s) 219, 398, 973, 1048
TasI AATT 5 cut(s) 52, 102, 439, 541, 684
TatI WGTACW 1 cut(s) 393
TfiI GAWTC 3 cut(s) 452, 793, 938
Tru1I TTAA 6 cut(s) 119, 150, 212, 519, 687, 740
Tru9I TTAA 6 cut(s) 119, 150, 212, 519, 687, 740
TscAI CASTG 1 cut(s) 1021
TseFI GTSAC 1 cut(s) 398
TseI GCWGC 5 cut(s) 27, 30, 534, 548, 862
Tsp45I GTSAC 1 cut(s) 398
TspDTI ATGAA 5 cut(s) 366, 407, 785, 897, 1112
TspRI CASTG 1 cut(s) 1021
Van91I CCANNNNNTGG 1 cut(s) 133
Vha464I CTTAAG 1 cut(s) 518
VpaK11BI GGWCC 1 cut(s) 8
XapI RAATTY 1 cut(s) 439
XceI RCATGY 1 cut(s) 116
XcmI CCANNNNNNNNNTGG 1 cut(s) 722
ZrmI AGTACT 1 cut(s) 395
Zsp2I ATGCAT 2 cut(s) 43, 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.