Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004642.1

Orthogroup ID

OG0010780

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3773

Gene Structure 3773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1668 bp

ggtttactatctcgtcctctttcgcaagggtttccaatttcttcagatcattttgacatggattctacaacagaaactttccagcaccgcccgatgtcaatcaaattatggcctgctactcaaagtaccagaatattgcttgtagaacgaatgaccaagaatttcataactccatccattttctctagaaagtacggcctgcttagtaaagaagaggccgaggaagatgccaggaaaatagaagactttgcctttgcagctgcagagcaacaatttgagaaggaaccatatggtgatggaagttctgcagtgcaggtatatgccagagaatcaagtaagcttatgctggaagttctgaaaagagggcccaaagcaaaggaagatgatgagaaatctattcctgcctttaaaagtgtgtttgatatctctggtggccgcagatcttttattgatgcagaggaggctgaggagcttttcaaaccactaagggagcttggaaactcctatactaagatatgcttgagcaatagaagctttggtttggatgcagcccgtgttgctgtgccaatcttatcatccatcaaacatcaattgaaagaagtggatctgtcagattttattgcaggaaggtcagagacagaagctattgaagtcatgaacctgttttcttcagccctggaaggatgtgaattgaggtatctgaacctttcagacaatgccatgggcgagaaaggtgtaaatgcatttgggtcactcctgagatcacaaaataatttggaggaactttatttgatgaatgatggtatttcagaagaagctgcaagagcagtttctaagttcattccgtccactgggaagcttagagtccttcattttcacaataatatgacaggagatgaaggggcaattgccatctctgatatggtgaagcgttcacctgtcttggaggatttccgttgttcatctacaagggtgggctctgaaggcggtgtagctttagctgaagcacttgggacttgcacacatttgaagaagctcgatttgcgtgacaacatgttcggtgtagaatctggggttgctttgagtaaagtcctatctgcttttacagaacttactgaaatttacctcagttatcttaacttggaagatgaaggaacagaagcccttgccaatggtctcaaggattctgcaccgttgcttgaagttctggaattggcaggaaatgatattacagccaaatcaactgctgctttggctccctgtatagcagcaaaacaattccttactaggttaatattgtcagagaatgaactgaaggatgaaggttcaattatgatcagcaaagcattggcagagggtcatggtcagttaattgaggttgatttgagctctaattcaattagaagggttggggcgagacttttggctcaggctgttgtgaataaacctgggtttaaatcactgaacataaatggtaacttcatatctgatgaagggattgatgaggtggtggacatgtttaaaaattccccacatctgcttgggcctttggatgagaatgaccccgaaggagaagatctggatgaagaggatgaagacgaaggtgctgacaacgaggatgaattggaattgaggctcaaggtccttgaactaaggcgagaggaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005819 GO:0005856 GO:0005886 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007049 GO:0008104 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009536 GO:0009987 GO:0012505 GO:0015031 GO:0015630 GO:0015833 GO:0016020 GO:0017038 GO:0022402 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0032153 GO:0032506 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051301 GO:0051641 GO:0051649 GO:0061640 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

LRR_6 WPP

Protein Analysis

555

Amino Acids

61.08

Weight (kDa)

4.7

Isoelectric Point (pI)

42.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WPP	PF13943	33 - 128	1.2e-34	WPP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63130 AT3G63130
fragaria_vesca	FvH4_2g23560
prunus_persica	Prupe.8G240900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0291031
rosa_laevigata	RLG00000001587 RLG00000012153
rosa_multiflora	Rmu_sc0004642.1_g000001 Rmu_sc0005840.1_g000018
rosa_roxburghii	Rroxscaffold_7G00176440
rosa_rugosa	Rorug06G0217100
rosa_samantha	Rh6AG327100 Rh6BG334600 Rh6CG340800 Rh6DG328200 Rh7AG399900 Rh7CG418100 Rh7DG396000
rosa_wichuraiana	Rw0G011050 Rw6G028450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	304
AciI	CCGC	3 cut(s)	88, 436, 987
AclWI	GGATC	1 cut(s)	612
AcoI	YGGCCR	1 cut(s)	433
AcsI	RAATTY	3 cut(s)	160, 1119, 1525
AcuI	CTGAAG	5 cut(s)	27, 654, 1002, 1023, 1334
AfaI	GTAC	2 cut(s)	127, 194
AfiI	CCNNNNNNNGG	1 cut(s)	851
AflIII	ACRYGT	2 cut(s)	1053, 1515
AgsI	TTSAA	8 cut(s)	478, 595, 650, 1030, 1202, 1329, 1398, 1649
AjnI	CCWGG	3 cut(s)	230, 675, 1447
Alw21I	GWGCWC	1 cut(s)	1391
Alw26I	GTCTC	3 cut(s)	629, 1181, 1411
AlwI	GGATC	1 cut(s)	612
AoxI	GGCC	6 cut(s)	110, 196, 216, 365, 433, 1544
ApaI	GGGCCC	1 cut(s)	369
ApeKI	GCWGC	6 cut(s)	257, 260, 548, 818, 1247, 1268
ApoI	RAATTY	3 cut(s)	160, 1119, 1525
ArsI	GACNNNNNNTTYG	4 cut(s)	236, 268, 1040, 1072
AspS9I	GGNCC	4 cut(s)	365, 366, 1544, 1642
AsuHPI	GGTGA	3 cut(s)	305, 927, 937
AvaII	GGWCC	1 cut(s)	1642
BaeGI	GKGCMC	1 cut(s)	369
BanII	GRGCYC	3 cut(s)	369, 980, 1391
BbsI	GAAGAC	2 cut(s)	249, 1602
Bbv12I	GWGCWC	1 cut(s)	1391
BbvCI	CCTCAGC	1 cut(s)	465
BbvI	GCAGC	6 cut(s)	247, 269, 560, 805, 1234, 1280
BccI	CCATC	5 cut(s)	181, 290, 587, 794, 920
BceAI	ACGGC	1 cut(s)	211
BcgI	CGANNNNNNTGC	2 cut(s)	209, 243
BciT130I	CCWGG	3 cut(s)	232, 677, 1449
BclI	TGATCA	1 cut(s)	1335
BcoDI	GTCTC	3 cut(s)	629, 1181, 1411
BfaI	CTAG	2 cut(s)	186, 1287
BfmI	CTRYAG	2 cut(s)	261, 306
BfuAI	ACCTGC	1 cut(s)	304
BglII	AGATCT	2 cut(s)	440, 1576
BisI	GCNGC	7 cut(s)	258, 261, 436, 549, 819, 1248, 1269
BlsI	GCNGC	7 cut(s)	259, 262, 437, 550, 820, 1249, 1270
Bme1390I	CCNGG	3 cut(s)	232, 677, 1449
Bme18I	GGWCC	1 cut(s)	1642
BmgT120I	GGNCC	4 cut(s)	365, 366, 1544, 1642
BmiI	GGNNCC	3 cut(s)	285, 367, 1257
BmrFI	CCNGG	3 cut(s)	232, 677, 1449
BmrI	ACTGGG	1 cut(s)	861
BmsI	GCATC	3 cut(s)	217, 442, 535
BmuI	ACTGGG	1 cut(s)	861
BpiI	GAAGAC	2 cut(s)	249, 1602
Bpu10I	CCTNAGC	2 cut(s)	465, 1428
BpuEI	CTTGAG	3 cut(s)	541, 1163, 1622
BsaBI	GATNNNNATC	1 cut(s)	98
BsaI	GGTCTC	1 cut(s)	1181
BsaJI	CCNNGG	4 cut(s)	219, 675, 720, 1448
Bsc4I	CCNNNNNNNGG	1 cut(s)	851
Bse1I	ACTGG	1 cut(s)	856
Bse8I	GATNNNNATC	1 cut(s)	98
BseBI	CCWGG	3 cut(s)	232, 677, 1449
BseDI	CCNNGG	4 cut(s)	219, 675, 720, 1448
BseGI	GGATG	9 cut(s)	173, 550, 575, 689, 1324, 1558, 1588, 1597, 1624
BseJI	GATNNNNATC	1 cut(s)	98
BseLI	CCNNNNNNNGG	1 cut(s)	851
BseMII	CTCAG	4 cut(s)	456, 749, 1141, 1442
BseNI	ACTGG	1 cut(s)	856
BseRI	GAGGAG	2 cut(s)	473, 482
BseSI	GKGCMC	1 cut(s)	369
BseXI	GCAGC	6 cut(s)	247, 269, 560, 805, 1234, 1280
BsgI	GTGCAG	2 cut(s)	332, 1173
BshFI	GGCC	6 cut(s)	112, 198, 218, 367, 435, 1546
BsiHKAI	GWGCWC	1 cut(s)	1391
BslFI	GGGAC	1 cut(s)	1027
BslI	CCNNNNNNNGG	1 cut(s)	851
BsmAI	GTCTC	3 cut(s)	629, 1181, 1411
BsmFI	GGGAC	1 cut(s)	1027
BsnI	GGCC	6 cut(s)	112, 198, 218, 367, 435, 1546
Bso31I	GGTCTC	1 cut(s)	1181
Bsp120I	GGGCCC	1 cut(s)	365
Bsp1286I	GDGCHC	3 cut(s)	369, 980, 1391
Bsp143I	GATC	6 cut(s)	46, 440, 604, 761, 1335, 1576
Bsp19I	CCATGG	1 cut(s)	720
BspACI	CCGC	3 cut(s)	88, 436, 987
BspANI	GGCC	6 cut(s)	112, 198, 218, 367, 435, 1546
BspCNI	CTCAG	4 cut(s)	457, 750, 1140, 1441
BspHI	TCATGA	1 cut(s)	654
BspLI	GGNNCC	3 cut(s)	285, 367, 1257
BspMAI	CTGCAG	2 cut(s)	265, 310
BspMI	ACCTGC	1 cut(s)	304
BspPI	GGATC	1 cut(s)	612
BspTNI	GGTCTC	1 cut(s)	1181
BsrI	ACTGG	1 cut(s)	856
BssECI	CCNNGG	4 cut(s)	219, 675, 720, 1448
BssMI	GATC	6 cut(s)	46, 440, 604, 761, 1335, 1576
BssT1I	CCWWGG	1 cut(s)	720
Bst2UI	CCWGG	3 cut(s)	232, 677, 1449
Bst4CI	ACNGT	1 cut(s)	1194
Bst6I	CTCTTC	2 cut(s)	207, 1581
BstC8I	GCNNGC	2 cut(s)	114, 200
BstDSI	CCRYGG	1 cut(s)	720
BstF5I	GGATG	9 cut(s)	173, 550, 575, 689, 1324, 1558, 1588, 1597, 1624
BstKTI	GATC	6 cut(s)	49, 443, 607, 764, 1338, 1579
BstMAI	GTCTC	3 cut(s)	629, 1181, 1411
BstMBI	GATC	6 cut(s)	46, 440, 604, 761, 1335, 1576
BstMWI	GCNNNNNNNGC	8 cut(s)	257, 461, 531, 557, 824, 984, 1042, 1253
BstNI	CCWGG	3 cut(s)	232, 677, 1449
BstNSI	RCATGY	2 cut(s)	1057, 1519
BstSCI	CCNGG	3 cut(s)	230, 675, 1447
BstSFI	CTRYAG	2 cut(s)	261, 306
BstSLI	GKGCMC	1 cut(s)	369
BstV1I	GCAGC	6 cut(s)	247, 269, 560, 805, 1234, 1280
BstV2I	GAAGAC	2 cut(s)	249, 1602
BstX2I	RGATCY	3 cut(s)	440, 604, 1576
BstYI	RGATCY	3 cut(s)	440, 604, 1576
BsuRI	GGCC	6 cut(s)	112, 198, 218, 367, 435, 1546
BtgI	CCRYGG	1 cut(s)	720
BtsCI	GGATG	9 cut(s)	173, 550, 575, 689, 1324, 1558, 1588, 1597, 1624
BtsI	GCAGTG	1 cut(s)	315
BtsIMutI	CAGTG	3 cut(s)	315, 849, 1460
BveI	ACCTGC	1 cut(s)	304
Cac8I	GCNNGC	2 cut(s)	114, 200
CciI	TCATGA	1 cut(s)	654
Cfr13I	GGNCC	4 cut(s)	365, 366, 1544, 1642
Csp6I	GTAC	2 cut(s)	126, 193
CviAII	CATG	6 cut(s)	58, 655, 721, 1054, 1361, 1516
CviQI	GTAC	2 cut(s)	126, 193
DpnI	GATC	6 cut(s)	48, 442, 606, 763, 1337, 1578
DpnII	GATC	6 cut(s)	46, 440, 604, 761, 1335, 1576
DraI	TTTAAA	3 cut(s)	409, 1456, 1522
EaeI	YGGCCR	1 cut(s)	433
Eam1104I	CTCTTC	2 cut(s)	207, 1581
EarI	CTCTTC	2 cut(s)	207, 1581
Ecl136II	GAGCTC	1 cut(s)	1389
Eco130I	CCWWGG	1 cut(s)	720
Eco24I	GRGCYC	3 cut(s)	369, 980, 1391
Eco31I	GGTCTC	1 cut(s)	1181
Eco32I	GATATC	1 cut(s)	424
Eco47I	GGWCC	1 cut(s)	1642
Eco53kI	GAGCTC	1 cut(s)	1389
Eco57I	CTGAAG	5 cut(s)	27, 654, 1002, 1023, 1334
EcoICRI	GAGCTC	1 cut(s)	1389
EcoO109I	RGGNCCY	2 cut(s)	365, 1642
EcoRII	CCWGG	3 cut(s)	230, 675, 1447
EcoRV	GATATC	1 cut(s)	424
EcoT14I	CCWWGG	1 cut(s)	720
EcoT22I	ATGCAT	1 cut(s)	745
EcoT38I	GRGCYC	3 cut(s)	369, 980, 1391
ErhI	CCWWGG	1 cut(s)	720
FaeI	CATG	6 cut(s)	61, 658, 724, 1057, 1364, 1519
FalI	AAGNNNNNCTT	2 cut(s)	503, 535
FaqI	GGGAC	1 cut(s)	1027
FatI	CATG	6 cut(s)	57, 654, 720, 1053, 1360, 1515
FauNDI	CATATG	1 cut(s)	289
FbaI	TGATCA	1 cut(s)	1335
Fnu4HI	GCNGC	7 cut(s)	258, 261, 436, 549, 819, 1248, 1269
FokI	GGATG	9 cut(s)	160, 557, 562, 696, 1331, 1565, 1595, 1604, 1631
FriOI	GRGCYC	3 cut(s)	369, 980, 1391
Fsp4HI	GCNGC	7 cut(s)	258, 261, 436, 549, 819, 1248, 1269
FspBI	CTAG	2 cut(s)	186, 1287
GluI	GCNGC	7 cut(s)	258, 261, 436, 549, 819, 1248, 1269
HaeIII	GGCC	6 cut(s)	112, 198, 218, 367, 435, 1546
Hin1II	CATG	6 cut(s)	61, 658, 724, 1057, 1364, 1519
HindIII	AAGCTT	3 cut(s)	338, 532, 857
HinfI	GANTC	5 cut(s)	62, 329, 864, 1067, 1184
HphI	GGTGA	3 cut(s)	305, 927, 937
Hpy166II	GTNNAC	4 cut(s)	5, 849, 935, 1513
Hpy188III	TCNNGA	5 cut(s)	186, 655, 757, 1208, 1580
Hpy8I	GTNNAC	4 cut(s)	5, 849, 935, 1513
HpyCH4III	ACNGT	1 cut(s)	1194
HpyF10VI	GCNNNNNNNGC	8 cut(s)	257, 461, 531, 557, 824, 984, 1042, 1253
Hsp92II	CATG	6 cut(s)	61, 658, 724, 1057, 1364, 1519
Ksp22I	TGATCA	1 cut(s)	1335
Kzo9I	GATC	6 cut(s)	46, 440, 604, 761, 1335, 1576
LmnI	GCTCC	3 cut(s)	469, 490, 1261
Lsp1109I	GCAGC	6 cut(s)	247, 269, 560, 805, 1234, 1280
LweI	GCATC	3 cut(s)	217, 442, 535
MaeI	CTAG	2 cut(s)	186, 1287
MaeIII	GTNAC	3 cut(s)	750, 1046, 1475
MalI	GATC	6 cut(s)	48, 442, 606, 763, 1337, 1578
MboI	GATC	6 cut(s)	46, 440, 604, 761, 1335, 1576
MfeI	CAATTG	2 cut(s)	590, 906
MflI	RGATCY	3 cut(s)	440, 604, 1576
MhlI	GDGCHC	3 cut(s)	369, 980, 1391
MlyI	GAGTC	1 cut(s)	873
Mph1103I	ATGCAT	1 cut(s)	745
MseI	TTAA	6 cut(s)	408, 1137, 1292, 1370, 1455, 1521
MspA1I	CMGCKG	1 cut(s)	260
MspR9I	CCNGG	3 cut(s)	232, 677, 1449
MunI	CAATTG	2 cut(s)	590, 906
MvaI	CCWGG	3 cut(s)	232, 677, 1449
MwoI	GCNNNNNNNGC	8 cut(s)	257, 461, 531, 557, 824, 984, 1042, 1253
NcoI	CCATGG	1 cut(s)	720
NdeI	CATATG	1 cut(s)	289
NdeII	GATC	6 cut(s)	46, 440, 604, 761, 1335, 1576
NlaIII	CATG	6 cut(s)	61, 658, 724, 1057, 1364, 1519
NlaIV	GGNNCC	3 cut(s)	285, 367, 1257
NmeAIII	GCCGAG	1 cut(s)	244
NmuCI	GTSAC	2 cut(s)	750, 1046
NsiI	ATGCAT	1 cut(s)	745
NspI	RCATGY	2 cut(s)	1057, 1519
PagI	TCATGA	1 cut(s)	654
PciI	ACATGT	2 cut(s)	1053, 1515
PfeI	GAWTC	4 cut(s)	62, 329, 1067, 1184
PkrI	GCNGC	7 cut(s)	259, 262, 437, 550, 820, 1249, 1270
PleI	GAGTC	1 cut(s)	872
PpsI	GAGTC	1 cut(s)	872
PpuMI	RGGWCCY	1 cut(s)	1642
PscI	ACATGT	2 cut(s)	1053, 1515
Psp124BI	GAGCTC	1 cut(s)	1391
Psp5II	RGGWCCY	1 cut(s)	1642
Psp6I	CCWGG	3 cut(s)	230, 675, 1447
PspGI	CCWGG	3 cut(s)	230, 675, 1447
PspN4I	GGNNCC	3 cut(s)	285, 367, 1257
PspOMI	GGGCCC	1 cut(s)	365
PspPI	GGNCC	4 cut(s)	365, 366, 1544, 1642
PspPPI	RGGWCCY	1 cut(s)	1642
PstI	CTGCAG	2 cut(s)	265, 310
PsuI	RGATCY	3 cut(s)	440, 604, 1576
PvuII	CAGCTG	1 cut(s)	260
RsaI	GTAC	2 cut(s)	127, 194
RsaNI	GTAC	2 cut(s)	126, 193
SacI	GAGCTC	1 cut(s)	1391
SaqAI	TTAA	6 cut(s)	408, 1137, 1292, 1370, 1455, 1521
SatI	GCNGC	7 cut(s)	258, 261, 436, 549, 819, 1248, 1269
Sau3AI	GATC	6 cut(s)	46, 440, 604, 761, 1335, 1576
Sau96I	GGNCC	4 cut(s)	365, 366, 1544, 1642
SchI	GAGTC	1 cut(s)	873
ScrFI	CCNGG	3 cut(s)	232, 677, 1449
SduI	GDGCHC	3 cut(s)	369, 980, 1391
SfaNI	GCATC	3 cut(s)	217, 442, 535
SfcI	CTRYAG	2 cut(s)	261, 306
SinI	GGWCC	1 cut(s)	1642
SmlI	CTYRAG	3 cut(s)	520, 1178, 1637
SmoI	CTYRAG	3 cut(s)	520, 1178, 1637
SsiI	CCGC	3 cut(s)	88, 436, 987
SspI	AATATT	2 cut(s)	135, 1296
SspMI	CTAG	2 cut(s)	186, 1287
SstI	GAGCTC	1 cut(s)	1391
StyD4I	CCNGG	3 cut(s)	230, 675, 1447
StyI	CCWWGG	1 cut(s)	720
TaaI	ACNGT	1 cut(s)	1194
TaqI	TCGA	1 cut(s)	1038
TauI	GCSGC	1 cut(s)	438
TfiI	GAWTC	4 cut(s)	62, 329, 1067, 1184
Tru1I	TTAA	6 cut(s)	408, 1137, 1292, 1370, 1455, 1521
Tru9I	TTAA	6 cut(s)	408, 1137, 1292, 1370, 1455, 1521
TscAI	CASTG	3 cut(s)	315, 856, 1467
TseFI	GTSAC	2 cut(s)	750, 1046
TseI	GCWGC	6 cut(s)	257, 260, 548, 818, 1247, 1268
Tsp45I	GTSAC	2 cut(s)	750, 1046
TspGWI	ACGGA	2 cut(s)	834, 944
TspRI	CASTG	3 cut(s)	315, 856, 1467
VpaK11BI	GGWCC	1 cut(s)	1642
XapI	RAATTY	3 cut(s)	160, 1119, 1525
XbaI	TCTAGA	1 cut(s)	185
XceI	RCATGY	2 cut(s)	1057, 1519
XcmI	CCANNNNNNNNNTGG	1 cut(s)	919
XspI	CTAG	2 cut(s)	186, 1287
Zsp2I	ATGCAT	1 cut(s)	745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.