Rmu_sc0004733.1_g000003

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004733.1
OG0014629
Physical Location & Seq
Reverse (-)
7076 .. 11140
4065 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 3480 bp
atggaggtaaccaataggtacatcaccataaagactcaggtagacggagagcccaaagagtcggatttcgagctcaaaacttcagccctttcactctcacttgaccccagttccaatgacatcattgtgaagaatctgtatgtatcaatcgacccttaccagctaaaccgcatgaaaagtcagagctcatcacagaaagctataggttttgcagcagccatcactccgggcgaggatattgatgcttatggtgtcgcgaaggttgtggcttctgggaaccctgagtttgagaaggatgacttggttgtggggctcatcacttggggagagtacagtttgctaaaaggaggaaaatacatgttgaggaaatttgatcctatgggattcccactgtcttaccaagttggaattctaggtttcagtggacttacagcatatggtggattttttgaaatatgcaaaccgaagaagggggagaaagttttcgtctctgcagcttctggatcagttgggaatttggtcggacaatatgcaaagctttttggttgctatgttgttggatgtgcaggaagcaaagaaaaggtagcattgcttaaggaaaagcttggatttgatgatgcattcaactacaaggaagagcctgatttgaaggcagctctccaaaggtacttccctgatgggattgacatctactttgataatgtggggtttgaaatgctagaggctgcagttgttaacatgaacaccttcggtagagttgctgtctgcggcgtgatctccgagtacattgatgctacgaagcgagccgcacccaatatgctagatatgattcaaaaaaccgttaaaaccaacgatctcattctcctctgccaaaaatgcaaaaccctaaaccagctcaagcaaatccacgcccacctcctcacttccacccgacccgaaaacccctacgccatcgcaccgctcctctccgccgcctccaaagacgcttccttgttctcctacgcttgctcaatcttcaaacaccaccatcaccaccgcaacactttcatgtacaacaccatgatcagagcgcacgcgcaatcacacgcgccggtggctgcggttctgtgctatctagacttgttgaagtacggattgatcgctaataagtttactttccctccattgatcaaagcttgttcgatgttggtccataattctgagctaaccggtcggttggttcatgcccatgttgtgaaattcgggttcggagatgacccgtttgttgttagcgggctaatcgagttttattcggtgattcttgagatgggtgctgcccaattggtgtttgataaaagtcctagcaaagatgtggtggtgtggacggcgatggttgatgggtatgggaagattggggatgttgagaatgcacggaaggtgttcgatgaaatgcctgagagaaatgctgtgtcgtggagtgcgatgatggccgcatattctcgagtgagcgattttagagaggtggtttgtttgtttaggcaaatgcaagaggtggggacgaggcctaatgagtctgttcttgttagtgttctcactgccgctgctcatttgggtgcggtggcgcaagggttgtgggtgcactcctatgctaagaggcacgggcttgagtcgaataggatattggccactgcattggttgatatgtactccaaatgtggctatgtggaagcagctatgaaggtttttgagggcatttgtaataaggatgccagagtgtggaatgctatgattactggggttgcgatgaatggggatgcaaggaaatcgattgagctgtttgataaaatggttgtagataagatccaacctacagaaactacatttgttgctgttctctcggcttgtacccatgcaaaaatgatgattcaaaaaaccgttaaaaccaacgatctcattctcctctgccaaaaatgcaaaaccctaaaccagctcaagcaaatccacgcccacctcctcacttccacccgacccgaaaacccctacgccatcgcaccgctcctctccgccgcctccaaagacgcttccttgttctcctacgcttgctcaatcttcaaacaccaccatcaccaccgcaacactttcatgtacaacaccatgatcagagcgcacgcgcaatcacacgcgccggtggctgcggttctgtgctatctagacttgttgaagtacggattgatcgctaataagtttactttccctccattgatcaaagcttgttcgatgttggtccataatgctgagctaaccggtcggttggttcatgcccatgttgtgaaattcgggttcggagatgacccgtttgttgttagcgggctaatcgagttttattcggtgattcttgagatgggtgctgcccaattggtgtttgataaaagtcctagcaaagatgtggtggtgtggacggcgatggttgatgggtatgggaagattggggatgttgagaatgcacggaaggtgttcgatgaaatgcctgagagaaatgctgtgtcgtggagtgcgatgatggccgcatattctcgagtgagcgattttagagaggtggtttgtttgtttaggcaaatgcaagaggtggggacgaggcctaatgagtctgttcttgttagtgttctcactgccgctgctcatttgggtgcggtggcgcaagggctgtgggtgcagtcctatgctaagaggcacgggcttgagtcggataggatattggccactgcattggttgatatgtactccaaatgtggctatgtggaagcagctatgaaggtttttgagggcatttgtaataaggatgccagagtgtggaatgctatgattactggggttgcgatgaatggggatgcaaggaaatcgattgagctgtttgataaaatggttgtagataagatccaacctacagaaaccacatttgttgctgttctctcggcttgtacccatgcaaaaatggtagacaagggggttgaattgtttgatcaaatgagtaccctttatggggttgaacccatgcttcagcactatgcttgtgttgttgacctcttggccagagcaggcatgttagaggaagctgagaagtttatagaggacaagatggggggactaggaagaggggatgccaacgtgtggggggcattactgggtgcgtgtagagttcatgggaatgttgaagtgggggacagaatttggaaaaagctggctgatatgggagtagccgattgcggtattcatgttctttcatataacatgtacaaggaagctggcttggaattggaggcaaagagagtccgagatatgatctcagaaggcggaatgaagaagaaacctggttctagtgtgatagaggtaaatggagtggctgaagagttcattgttggtgatctttgtcctccacaagcacaagaaatgcttaagatacttgattctttttgtaaaatggtgaatttggaggatgtatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

1159

Amino Acids

127.7

Weight (kDa)

6.73

Isoelectric Point (pI)

32.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N_2 PF16884 6 - 118 1.8e-17 N-terminal domain of oxidoreductase
ADH_zinc_N PF00107 170 - 264 4.6e-19 Zinc-binding dehydrogenase
PPR_2 PF13041 449 - 481 2.7e-06 PPR repeat family
PPR PF01535 452 - 481 4.7e-07 PPR repeat
PPR_2 PF13041 582 - 629 5.9e-07 PPR repeat family
PPR_2 PF13041 807 - 839 2.7e-06 PPR repeat family
PPR PF01535 810 - 839 4.7e-07 PPR repeat
PPR_2 PF13041 940 - 987 5.9e-07 PPR repeat family
PPR_long PF17177 952 - 1040 5.2e-06 Pentacotripeptide-repeat region of PRORP
E_motif PF20431 1060 - 1122 2.3e-07 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014629)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03350
malus_domestica MD02G1033000.v1.1
prunus_persica Prupe.7G242300_v2.0.a1
pyrus_communis pycom02g01480 pycom02g02710 pycom04g20500
rosa_chinensis RchiOBHm_Chr2g0088571
rosa_laevigata RLG00000015966
rosa_multiflora Rmu_co8371145.1_g000001 Rmu_sc0004733.1_g000003
rosa_roxburghii Rroxscaffold_2G00152540
rosa_rugosa Rorug01G0485200
rosa_samantha Rh2AG040500 Rh2BG039200 Rh2CG040100 Rh2DG039500
rosa_wichuraiana Rw2G003140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 1755, 2829, 3147
AccBSI CCGCTC 2 cut(s) 961, 2035
AccI GTMKAC 2 cut(s) 42, 2976
AccII CGCG 5 cut(s) 257, 1076, 1088, 2150, 2162
AclWI GGATC 4 cut(s) 368, 511, 1834, 2908
AcoI YGGCCR 5 cut(s) 1467, 1662, 2541, 2736, 3066
AcsI RAATTY 7 cut(s) 368, 408, 514, 1238, 2312, 3204, 3463
AcuI CTGAAG 3 cut(s) 66, 3020, 3402
AfiI CCNNNNNNNGG 6 cut(s) 470, 1755, 2829, 3018, 3019, 3147
AflII CTTAAG 2 cut(s) 593, 3431
AflIII ACRYGT 3 cut(s) 357, 3144, 3267
AgeI ACCGGT 2 cut(s) 1208, 2282
AjnI CCWGG 1 cut(s) 3346
AjuI GAANNNNNNNTTGG 6 cut(s) 284, 316, 393, 425, 1643, 1675
Alw21I GWGCWC 3 cut(s) 75, 188, 1620
Alw26I GTCTC 1 cut(s) 493
Alw44I GTGCAC 1 cut(s) 1616
AlwI GGATC 4 cut(s) 368, 511, 1834, 2908
AlwNI CAGNNNCTG 1 cut(s) 500
Ama87I CYCGRG 2 cut(s) 1479, 2553
AoxI GGCC 7 cut(s) 1467, 1541, 1662, 2541, 2615, 2736, 3066
ApaLI GTGCAC 1 cut(s) 1616
ApoI RAATTY 7 cut(s) 368, 408, 514, 1238, 2312, 3204, 3463
ArsI GACNNNNNNTTYG 2 cut(s) 677, 709
AsiGI ACCGGT 2 cut(s) 1208, 2282
Asp700I GAANNNNTTC 4 cut(s) 482, 746, 1418, 2492
AspLEI GCGC 8 cut(s) 1072, 1078, 1090, 1603, 2146, 2152, 2164, 2677
AspS9I GGNCC 2 cut(s) 1189, 2263
AsuC2I CCSGG 1 cut(s) 228
AsuHPI GGTGA 7 cut(s) 16, 1022, 1306, 2096, 2380, 3410, 3472
AvaI CYCGRG 2 cut(s) 1479, 2553
AvaII GGWCC 2 cut(s) 1189, 2263
BaeGI GKGCMC 1 cut(s) 1620
BalI TGGCCA 3 cut(s) 1664, 2738, 3068
BanII GRGCYC 4 cut(s) 54, 75, 188, 315
Bbv12I GWGCWC 3 cut(s) 75, 188, 1620
BceAI ACGGC 2 cut(s) 1380, 2454
BcgI CGANNNNNNTGC 4 cut(s) 1785, 1819, 2859, 2893
BciT130I CCWGG 1 cut(s) 3348
BclI TGATCA 5 cut(s) 1062, 1167, 2136, 2241, 2998
BcnI CCSGG 1 cut(s) 228
BcoDI GTCTC 1 cut(s) 493
BfaI CTAG 9 cut(s) 413, 719, 821, 1115, 1341, 2189, 2415, 3125, 3354
BfmI CTRYAG 5 cut(s) 201, 492, 726, 1848, 2922
BfrI CTTAAG 2 cut(s) 593, 3431
BlpI GCTNAGC 1 cut(s) 2274
Bme1390I CCNGG 2 cut(s) 228, 3348
Bme18I GGWCC 2 cut(s) 1189, 2263
BmeT110I CYCGRG 2 cut(s) 1479, 2553
BmgT120I GGNCC 2 cut(s) 1189, 2263
BmiI GGNNCC 1 cut(s) 278
BmrFI CCNGG 2 cut(s) 228, 3348
BmrI ACTGGG 4 cut(s) 102, 1782, 2856, 3170
BmsI GCATC 8 cut(s) 232, 607, 781, 1735, 1783, 2809, 2857, 3127
BmuI ACTGGG 4 cut(s) 102, 1782, 2856, 3170
Bpu1102I GCTNAGC 1 cut(s) 2274
BpuEI CTTGAG 6 cut(s) 881, 1322, 1664, 1955, 2396, 2738
BpuMI CCSGG 1 cut(s) 228
Bsa29I ATCGAT 2 cut(s) 1805, 2879
BsaBI GATNNNNATC 1 cut(s) 686
BsaWI WCCGGW 2 cut(s) 1208, 2282
BsaXI ACNNNNNCTCC 4 cut(s) 1144, 1174, 2218, 2248
Bsc4I CCNNNNNNNGG 6 cut(s) 470, 1755, 2829, 3018, 3019, 3147
Bse118I RCCGGY 4 cut(s) 1090, 1208, 2164, 2282
Bse1I ACTGG 4 cut(s) 108, 1777, 2851, 3165
Bse3DI GCAATG 1 cut(s) 587
Bse8I GATNNNNATC 1 cut(s) 686
BseBI CCWGG 1 cut(s) 3348
BseCI ATCGAT 2 cut(s) 1805, 2879
BseJI GATNNNNATC 1 cut(s) 686
BseLI CCNNNNNNNGG 6 cut(s) 470, 1755, 2829, 3018, 3019, 3147
BseMI GCAATG 1 cut(s) 587
BseMII CTCAG 8 cut(s) 50, 273, 1191, 1425, 2265, 2499, 3084, 3336
BseNI ACTGG 4 cut(s) 108, 1777, 2851, 3165
BseRI GAGGAG 6 cut(s) 854, 908, 953, 1928, 1982, 2027
BseSI GKGCMC 1 cut(s) 1620
BsgI GTGCAG 2 cut(s) 585, 2711
Bsh1236I CGCG 5 cut(s) 257, 1076, 1088, 2150, 2162
Bsh1285I CGRYCG 2 cut(s) 1213, 2287
BshFI GGCC 7 cut(s) 1469, 1543, 1664, 2543, 2617, 2738, 3068
BshTI ACCGGT 2 cut(s) 1208, 2282
BshVI ATCGAT 2 cut(s) 1805, 2879
BsiEI CGRYCG 2 cut(s) 1213, 2287
BsiHKAI GWGCWC 3 cut(s) 75, 188, 1620
BsiHKCI CYCGRG 2 cut(s) 1479, 2553
BsiSI CCGG 5 cut(s) 227, 1091, 1209, 2165, 2283
BslFI GGGAC 4 cut(s) 1549, 2623, 3135, 3212
BslI CCNNNNNNNGG 6 cut(s) 470, 1755, 2829, 3018, 3019, 3147
BsmAI GTCTC 1 cut(s) 493
BsmBI CGTCTC 1 cut(s) 493
BsmFI GGGAC 4 cut(s) 1549, 2623, 3135, 3212
BsmI GAATGC 5 cut(s) 620, 1411, 1765, 2485, 2839
BsnI GGCC 7 cut(s) 1469, 1543, 1664, 2543, 2617, 2738, 3068
BsoBI CYCGRG 2 cut(s) 1479, 2553
Bsp1286I GDGCHC 5 cut(s) 54, 75, 188, 315, 1620
Bsp1407I TGTACA 3 cut(s) 1050, 2124, 3270
Bsp1720I GCTNAGC 1 cut(s) 2274
Bsp68I TCGCGA 1 cut(s) 257
BspANI GGCC 7 cut(s) 1469, 1543, 1664, 2543, 2617, 2738, 3068
BspCNI CTCAG 8 cut(s) 49, 274, 1192, 1426, 2266, 2500, 3085, 3335
BspDI ATCGAT 2 cut(s) 1805, 2879
BspFNI CGCG 5 cut(s) 257, 1076, 1088, 2150, 2162
BspLI GGNNCC 1 cut(s) 278
BspMAI CTGCAG 2 cut(s) 496, 730
BspPI GGATC 4 cut(s) 368, 511, 1834, 2908
BspQI GCTCTTC 1 cut(s) 630
BspTI CTTAAG 2 cut(s) 593, 3431
BsrBI CCGCTC 2 cut(s) 961, 2035
BsrDI GCAATG 1 cut(s) 587
BsrFI RCCGGY 4 cut(s) 1090, 1208, 2164, 2282
BsrGI TGTACA 3 cut(s) 1050, 2124, 3270
BsrI ACTGG 4 cut(s) 108, 1777, 2851, 3165
BssAI RCCGGY 4 cut(s) 1090, 1208, 2164, 2282
Bst2UI CCWGG 1 cut(s) 3348
Bst4CI ACNGT 4 cut(s) 335, 393, 841, 1915
Bst6I CTCTTC 3 cut(s) 630, 3124, 3378
BstAFI CTTAAG 2 cut(s) 593, 3431
BstAUI TGTACA 3 cut(s) 1050, 2124, 3270
BstEII GGTNACC 1 cut(s) 7
BstFNI CGCG 5 cut(s) 257, 1076, 1088, 2150, 2162
BstHHI GCGC 8 cut(s) 1072, 1078, 1090, 1603, 2146, 2152, 2164, 2677
BstMAI GTCTC 1 cut(s) 493
BstMCI CGRYCG 2 cut(s) 1213, 2287
BstMWI GCNNNNNNNGC 7 cut(s) 876, 1094, 1466, 1950, 2168, 2540, 2689
BstNI CCWGG 1 cut(s) 3348
BstNSI RCATGY 3 cut(s) 361, 3082, 3271
BstPI GGTNACC 1 cut(s) 7
BstSCI CCNGG 2 cut(s) 226, 3346
BstSFI CTRYAG 5 cut(s) 201, 492, 726, 1848, 2922
BstSLI GKGCMC 1 cut(s) 1620
BstUI CGCG 5 cut(s) 257, 1076, 1088, 2150, 2162
BstX2I RGATCY 2 cut(s) 1839, 2913
BstXI CCANNNNNNTGG 2 cut(s) 1672, 2746
BstYI RGATCY 2 cut(s) 1839, 2913
Bsu15I ATCGAT 2 cut(s) 1805, 2879
BsuRI GGCC 7 cut(s) 1469, 1543, 1664, 2543, 2617, 2738, 3068
BsuTUI ATCGAT 2 cut(s) 1805, 2879
BtgZI GCGATG 8 cut(s) 937, 1382, 1475, 1796, 2011, 2456, 2549, 2870
BtsI GCAGTG 4 cut(s) 1572, 1665, 2646, 2739
BtsIMutI CAGTG 6 cut(s) 389, 427, 1572, 1665, 2646, 2739
BtuMI TCGCGA 1 cut(s) 257
CaiI CAGNNNCTG 1 cut(s) 500
CfoI GCGC 8 cut(s) 1072, 1078, 1090, 1603, 2146, 2152, 2164, 2677
Cfr10I RCCGGY 4 cut(s) 1090, 1208, 2164, 2282
Cfr13I GGNCC 2 cut(s) 1189, 2263
ClaI ATCGAT 2 cut(s) 1805, 2879
CseI GACGC 2 cut(s) 992, 2066
CsiI ACCWGGT 1 cut(s) 3346
CspAI ACCGGT 2 cut(s) 1208, 2282
CspCI CAANNNNNGTGG 6 cut(s) 1592, 1627, 2666, 2701, 2920, 2955
EaeI YGGCCR 5 cut(s) 1467, 1662, 2541, 2736, 3066
Eam1104I CTCTTC 3 cut(s) 630, 3124, 3378
EarI CTCTTC 3 cut(s) 630, 3124, 3378
EciI GGCGGA 3 cut(s) 958, 2032, 3345
Ecl136II GAGCTC 2 cut(s) 73, 186
Eco147I AGGCCT 2 cut(s) 1543, 2617
Eco24I GRGCYC 4 cut(s) 54, 75, 188, 315
Eco47I GGWCC 2 cut(s) 1189, 2263
Eco53kI GAGCTC 2 cut(s) 73, 186
Eco57I CTGAAG 3 cut(s) 66, 3020, 3402
Eco88I CYCGRG 2 cut(s) 1479, 2553
Eco91I GGTNACC 1 cut(s) 7
EcoICRI GAGCTC 2 cut(s) 73, 186
EcoO65I GGTNACC 1 cut(s) 7
EcoRI GAATTC 1 cut(s) 408
EcoRII CCWGG 1 cut(s) 3346
EcoT22I ATGCAT 1 cut(s) 622
EcoT38I GRGCYC 4 cut(s) 54, 75, 188, 315
Esp3I CGTCTC 1 cut(s) 493
FalI AAGNNNNNCTT 4 cut(s) 284, 316, 3414, 3446
FaqI GGGAC 4 cut(s) 1549, 2623, 3135, 3212
FauI CCCGC 2 cut(s) 1265, 2339
FauNDI CATATG 1 cut(s) 436
FbaI TGATCA 5 cut(s) 1062, 1167, 2136, 2241, 2998
FblI GTMKAC 2 cut(s) 42, 2976
FokI GGATG 9 cut(s) 308, 573, 1409, 1757, 1805, 2483, 2831, 2879, 3149
FriOI GRGCYC 4 cut(s) 54, 75, 188, 315
FspBI CTAG 9 cut(s) 413, 719, 821, 1115, 1341, 2189, 2415, 3125, 3354
GlaI GCGC 8 cut(s) 1071, 1077, 1089, 1602, 2145, 2151, 2163, 2676
HaeIII GGCC 7 cut(s) 1469, 1543, 1664, 2543, 2617, 2738, 3068
HapII CCGG 5 cut(s) 227, 1091, 1209, 2165, 2283
HgaI GACGC 2 cut(s) 992, 2066
HhaI GCGC 8 cut(s) 1072, 1078, 1090, 1603, 2146, 2152, 2164, 2677
Hin6I GCGC 8 cut(s) 1070, 1076, 1088, 1601, 2144, 2150, 2162, 2675
HinP1I GCGC 8 cut(s) 1070, 1076, 1088, 1601, 2144, 2150, 2162, 2675
HincII GTYRAC 2 cut(s) 736, 3058
HindII GTYRAC 2 cut(s) 736, 3058
HindIII AAGCTT 4 cut(s) 536, 602, 1173, 2247
HpaI GTTAAC 1 cut(s) 736
HpaII CCGG 5 cut(s) 227, 1091, 1209, 2165, 2283
HphI GGTGA 7 cut(s) 16, 1022, 1306, 2096, 2380, 3410, 3472
Hpy188III TCNNGA 8 cut(s) 256, 501, 1115, 1301, 1479, 2189, 2375, 2553
HpyCH4III ACNGT 4 cut(s) 335, 393, 841, 1915
HpyCH4IV ACGT 1 cut(s) 3144
HpyF10VI GCNNNNNNNGC 7 cut(s) 876, 1094, 1466, 1950, 2168, 2540, 2689
HpySE526I ACGT 1 cut(s) 3144
HspAI GCGC 8 cut(s) 1070, 1076, 1088, 1601, 2144, 2150, 2162, 2675
Ksp22I TGATCA 5 cut(s) 1062, 1167, 2136, 2241, 2998
KspAI GTTAAC 1 cut(s) 736
LguI GCTCTTC 1 cut(s) 630
LmnI GCTCC 2 cut(s) 966, 2040
LweI GCATC 8 cut(s) 232, 607, 781, 1735, 1783, 2809, 2857, 3127
MabI ACCWGGT 1 cut(s) 3346
MaeI CTAG 9 cut(s) 413, 719, 821, 1115, 1341, 2189, 2415, 3125, 3354
MaeII ACGT 1 cut(s) 3144
MaeIII GTNAC 1 cut(s) 7
MbiI CCGCTC 2 cut(s) 961, 2035
MfeI CAATTG 2 cut(s) 1319, 2393
MflI RGATCY 2 cut(s) 1839, 2913
MhlI GDGCHC 5 cut(s) 54, 75, 188, 315, 1620
MlsI TGGCCA 3 cut(s) 1664, 2738, 3068
MluNI TGGCCA 3 cut(s) 1664, 2738, 3068
MlyI GAGTC 7 cut(s) 28, 68, 1559, 1655, 2633, 2729, 3315
MmeI TCCRAC 7 cut(s) 42, 385, 502, 538, 1867, 2703, 2941
Mox20I TGGCCA 3 cut(s) 1664, 2738, 3068
Mph1103I ATGCAT 1 cut(s) 622
MroXI GAANNNNTTC 4 cut(s) 482, 746, 1418, 2492
MscI TGGCCA 3 cut(s) 1664, 2738, 3068
MseI TTAA 5 cut(s) 594, 735, 843, 1917, 3432
MslI CAYNNNNRTG 9 cut(s) 125, 1046, 1227, 1590, 1623, 2120, 2301, 2664, 3183
Msp20I TGGCCA 3 cut(s) 1664, 2738, 3068
MspA1I CMGCKG 2 cut(s) 1580, 2654
MspCI CTTAAG 2 cut(s) 593, 3431
MspI CCGG 5 cut(s) 227, 1091, 1209, 2165, 2283
MspR9I CCNGG 2 cut(s) 228, 3348
MunI CAATTG 2 cut(s) 1319, 2393
Mva1269I GAATGC 5 cut(s) 620, 1411, 1765, 2485, 2839
MvaI CCWGG 1 cut(s) 3348
MvnI CGCG 5 cut(s) 257, 1076, 1088, 2150, 2162
MwoI GCNNNNNNNGC 7 cut(s) 876, 1094, 1466, 1950, 2168, 2540, 2689
NciI CCSGG 1 cut(s) 228
NdeI CATATG 1 cut(s) 436
NlaIV GGNNCC 1 cut(s) 278
NmeAIII GCCGAG 2 cut(s) 1856, 2930
NruI TCGCGA 1 cut(s) 257
NsiI ATGCAT 1 cut(s) 622
NspI RCATGY 3 cut(s) 361, 3082, 3271
PaeR7I CTCGAG 2 cut(s) 1479, 2553
PceI AGGCCT 2 cut(s) 1543, 2617
PciI ACATGT 2 cut(s) 357, 3267
PciSI GCTCTTC 1 cut(s) 630
PcsI WCGNNNNNNNCGW 2 cut(s) 1457, 2531
PctI GAATGC 5 cut(s) 620, 1411, 1765, 2485, 2839
PdmI GAANNNNTTC 4 cut(s) 482, 746, 1418, 2492
PfeI GAWTC 7 cut(s) 133, 384, 829, 1297, 1903, 2371, 3443
PflMI CCANNNNNTGG 3 cut(s) 1755, 2829, 3147
PinAI ACCGGT 2 cut(s) 1208, 2282
PleI GAGTC 7 cut(s) 28, 67, 1558, 1654, 2632, 2728, 3314
PpsI GAGTC 7 cut(s) 28, 67, 1558, 1654, 2632, 2728, 3314
PscI ACATGT 2 cut(s) 357, 3267
Psp124BI GAGCTC 2 cut(s) 75, 188
Psp6I CCWGG 1 cut(s) 3346
PspEI GGTNACC 1 cut(s) 7
PspGI CCWGG 1 cut(s) 3346
PspN4I GGNNCC 1 cut(s) 278
PspPI GGNCC 2 cut(s) 1189, 2263
PstI CTGCAG 2 cut(s) 496, 730
PstNI CAGNNNCTG 1 cut(s) 500
PsuI RGATCY 2 cut(s) 1839, 2913
RruI TCGCGA 1 cut(s) 257
RseI CAYNNNNRTG 9 cut(s) 125, 1046, 1227, 1590, 1623, 2120, 2301, 2664, 3183
SacI GAGCTC 2 cut(s) 75, 188
SapI GCTCTTC 1 cut(s) 630
SaqAI TTAA 5 cut(s) 594, 735, 843, 1917, 3432
Sau96I GGNCC 2 cut(s) 1189, 2263
SchI GAGTC 7 cut(s) 28, 68, 1559, 1655, 2633, 2729, 3315
ScrFI CCNGG 2 cut(s) 228, 3348
SduI GDGCHC 5 cut(s) 54, 75, 188, 315, 1620
SexAI ACCWGGT 1 cut(s) 3346
SfaNI GCATC 8 cut(s) 232, 607, 781, 1735, 1783, 2809, 2857, 3127
SfcI CTRYAG 5 cut(s) 201, 492, 726, 1848, 2922
Sfr274I CTCGAG 2 cut(s) 1479, 2553
SgrAI CRCCGGYG 2 cut(s) 1090, 2164
SinI GGWCC 2 cut(s) 1189, 2263
SlaI CTCGAG 2 cut(s) 1479, 2553
SmiMI CAYNNNNRTG 9 cut(s) 125, 1046, 1227, 1590, 1623, 2120, 2301, 2664, 3183
SseBI AGGCCT 2 cut(s) 1543, 2617
SspMI CTAG 9 cut(s) 413, 719, 821, 1115, 1341, 2189, 2415, 3125, 3354
SstI GAGCTC 2 cut(s) 75, 188
StuI AGGCCT 2 cut(s) 1543, 2617
StyD4I CCNGG 2 cut(s) 226, 3346
TaaI ACNGT 4 cut(s) 335, 393, 841, 1915
TaiI ACGT 1 cut(s) 3147
TatI WGTACW 7 cut(s) 330, 783, 1050, 1683, 2124, 2757, 3270
TauI GCSGC 8 cut(s) 771, 809, 974, 1472, 1580, 2048, 2546, 2654
TfiI GAWTC 7 cut(s) 133, 384, 829, 1297, 1903, 2371, 3443
Tru1I TTAA 5 cut(s) 594, 735, 843, 1917, 3432
Tru9I TTAA 5 cut(s) 594, 735, 843, 1917, 3432
TscAI CASTG 6 cut(s) 396, 427, 1579, 1672, 2653, 2746
TspGWI ACGGA 5 cut(s) 60, 1146, 1426, 2220, 2500
TspRI CASTG 6 cut(s) 396, 427, 1579, 1672, 2653, 2746
Van91I CCANNNNNTGG 3 cut(s) 1755, 2829, 3147
Vha464I CTTAAG 2 cut(s) 593, 3431
VneI GTGCAC 1 cut(s) 1616
VpaK11BI GGWCC 2 cut(s) 1189, 2263
XapI RAATTY 7 cut(s) 368, 408, 514, 1238, 2312, 3204, 3463
XbaI TCTAGA 2 cut(s) 1114, 2188
XceI RCATGY 3 cut(s) 361, 3082, 3271
XhoI CTCGAG 2 cut(s) 1479, 2553
XmiI GTMKAC 2 cut(s) 42, 2976
XmnI GAANNNNTTC 4 cut(s) 482, 746, 1418, 2492
XspI CTAG 9 cut(s) 413, 719, 821, 1115, 1341, 2189, 2415, 3125, 3354
Zsp2I ATGCAT 1 cut(s) 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.