Rmu_sc0004818.1_g000002

Protein of unknown function (DUF3128)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004818.1
OG0010339
Physical Location & Seq
Reverse (-)
4665 .. 9072
4408 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 915 bp
atgattaactccgctcgacccgtgctgccgcaccccaccatgacctcagcagttatgattccaaatgccgtgctccacgccgccacagctcacgccgttaagactcgatcaagaatcacgctggtggacttgctctacgcctctaccgccacctgcataaaatctccgacgattttgccatttcacctgacaaccaattgcatcggcttctatatctgtctcaaacaaaagctctcagatatcattttgaaccgattttggaccttgccgggcctctcccccaagccctacgacaccggcaagttgttgccggcggccttcttttgccgcaccgactcggcctacctgtatctgacctgcgactctaagatccgcggcgctaacaagctcgcgtcgctccggccgccgtcacgtgcaaagccgacgctgtcgtcctctgaatttggtgttggtgtgcttccggatcgcattctctgtgtcgatccgagcgctgtcggcgtttctcggtattccgccatcgacgttcctcgcgttctcgtgctccttctccgcttgcctcggcctcgtcgtctcccaaggaaggcagagtccctcggtctgttgagagaggcagagtcatgtcttcaggcgaagaagtctcttcggtttcaaagcgtaccttatcgtgctccacctgctttgacgctctctggttttgctattcaatattataggcttgggacacttgataactgtggtgggaaatggagtgctcttgtggattgtttaactttgaagacaaagcggtcagctgaagtgcaggaaattttggagtctcgtgagaaagccaaggctcacatctggacttttcgaaccccagaagaagcatcaagtaattggaaagaacaatttggacatttagatgaaatggaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3128

Protein Analysis

304

Amino Acids

33.75

Weight (kDa)

9.66

Isoelectric Point (pI)

48.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PANTS-like PF11326 228 - 278 1.3e-09 Synaptic plasticity regulator PANTS-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010339)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25315 AT4G25315 AT4G25315
fragaria_vesca FvH4_3g30110
malus_domestica MD03G1133000.v1.1 MD14G1038500.v1.1
prunus_persica Prupe.6G117700_v2.0.a1
pyrus_communis pycom14g03310
rosa_chinensis RchiOBHm_Chr5g0055601
rosa_laevigata RLG00000034999
rosa_multiflora Rmu_sc0004818.1_g000002
rosa_roxburghii Rroxscaffold_1G00024680
rosa_rugosa Rorug05G0294200 Rorug05G0294300 Rorug05G0294300 Rorug05G0294400
rosa_samantha Rh5AG363600 Rh5BG375700 Rh5CG398200 Rh5DG388900
rosa_wichuraiana Rw5G034210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 161, 682
AasI GACNNNNNNGTC 2 cut(s) 430, 784
Acc36I ACCTGC 3 cut(s) 161, 365, 682
AccBSI CCGCTC 1 cut(s) 14
AccII CGCG 3 cut(s) 375, 392, 531
AccIII TCCGGA 1 cut(s) 460
AclWI GGATC 3 cut(s) 364, 471, 476
AcoI YGGCCR 1 cut(s) 401
AcsI RAATTY 2 cut(s) 440, 804
AcuI CTGAAG 2 cut(s) 608, 813
AcvI CACGTG 1 cut(s) 413
AfaI GTAC 1 cut(s) 657
AfeI AGCGCT 1 cut(s) 490
AfiI CCNNNNNNNGG 1 cut(s) 580
AgsI TTSAA 4 cut(s) 250, 650, 704, 775
AjuI GAANNNNNNNTTGG 2 cut(s) 432, 464
AleI CACNNNNGTG 1 cut(s) 122
AluBI AGCT 4 cut(s) 89, 232, 388, 791
AluI AGCT 4 cut(s) 89, 232, 388, 791
Alw21I GWGCWC 4 cut(s) 75, 543, 670, 754
Alw26I GTCTC 4 cut(s) 224, 575, 642, 819
AlwI GGATC 3 cut(s) 364, 471, 476
Aor13HI TCCGGA 1 cut(s) 460
Aor51HI AGCGCT 1 cut(s) 490
AoxI GGCC 5 cut(s) 271, 315, 339, 401, 560
ApeKI GCWGC 1 cut(s) 25
ApoI RAATTY 2 cut(s) 440, 804
AspLEI GCGC 2 cut(s) 380, 491
AspS9I GGNCC 2 cut(s) 261, 271
AsuC2I CCSGG 1 cut(s) 270
AsuHPI GGTGA 1 cut(s) 176
AsuII TTCGAA 1 cut(s) 850
AvaII GGWCC 1 cut(s) 261
BauI CACGAG 2 cut(s) 536, 816
BbrPI CACGTG 1 cut(s) 413
BbsI GAAGAC 2 cut(s) 614, 782
Bbv12I GWGCWC 4 cut(s) 75, 543, 670, 754
BbvCI CCTCAGC 1 cut(s) 46
BbvI GCAGC 1 cut(s) 12
BccI CCATC 1 cut(s) 524
BceAI ACGGC 3 cut(s) 53, 80, 391
BcgI CGANNNNNNTGC 2 cut(s) 157, 191
BcnI CCSGG 1 cut(s) 270
BcoDI GTCTC 4 cut(s) 224, 575, 642, 819
BfoI RGCGCY 2 cut(s) 381, 492
BfuAI ACCTGC 3 cut(s) 161, 365, 682
BisI GCNGC 7 cut(s) 26, 29, 81, 315, 328, 376, 404
BlsI GCNGC 7 cut(s) 27, 30, 82, 316, 329, 377, 405
Bme1390I CCNGG 1 cut(s) 270
Bme18I GGWCC 1 cut(s) 261
BmgT120I GGNCC 2 cut(s) 261, 271
BmrFI CCNGG 1 cut(s) 270
BmsI GCATC 2 cut(s) 210, 875
BpiI GAAGAC 2 cut(s) 614, 782
Bpu10I CCTNAGC 1 cut(s) 46
Bpu14I TTCGAA 1 cut(s) 850
BpuMI CCSGG 1 cut(s) 270
BsaAI YACGTR 1 cut(s) 413
BsaJI CCNNGG 5 cut(s) 373, 557, 575, 592, 828
BsaWI WCCGGW 1 cut(s) 460
Bsc4I CCNNNNNNNGG 1 cut(s) 580
Bse118I RCCGGY 2 cut(s) 296, 310
BseAI TCCGGA 1 cut(s) 460
BseDI CCNNGG 5 cut(s) 373, 557, 575, 592, 828
BseLI CCNNNNNNNGG 1 cut(s) 580
BseMII CTCAG 2 cut(s) 60, 249
BseX3I CGGCCG 1 cut(s) 401
BseXI GCAGC 1 cut(s) 12
BsgI GTGCAG 1 cut(s) 818
Bsh1236I CGCG 3 cut(s) 375, 392, 531
Bsh1285I CGRYCG 1 cut(s) 404
BshFI GGCC 5 cut(s) 273, 317, 341, 403, 562
BsiEI CGRYCG 1 cut(s) 404
BsiHKAI GWGCWC 4 cut(s) 75, 543, 670, 754
BsiSI CCGG 5 cut(s) 269, 297, 311, 400, 461
BslFI GGGAC 2 cut(s) 574, 733
BslI CCNNNNNNNGG 1 cut(s) 580
BsmAI GTCTC 4 cut(s) 224, 575, 642, 819
BsmBI CGTCTC 1 cut(s) 575
BsmFI GGGAC 2 cut(s) 574, 733
BsmI GAATGC 1 cut(s) 468
BsnI GGCC 5 cut(s) 273, 317, 341, 403, 562
Bsp119I TTCGAA 1 cut(s) 850
Bsp1286I GDGCHC 4 cut(s) 75, 543, 670, 754
Bsp13I TCCGGA 1 cut(s) 460
Bsp143I GATC 4 cut(s) 107, 369, 463, 481
BspANI GGCC 5 cut(s) 273, 317, 341, 403, 562
BspCNI CTCAG 2 cut(s) 59, 248
BspEI TCCGGA 1 cut(s) 460
BspFNI CGCG 3 cut(s) 375, 392, 531
BspMI ACCTGC 3 cut(s) 161, 365, 682
BspPI GGATC 3 cut(s) 364, 471, 476
BspT104I TTCGAA 1 cut(s) 850
BsrBI CCGCTC 1 cut(s) 14
BsrFI RCCGGY 2 cut(s) 296, 310
BssAI RCCGGY 2 cut(s) 296, 310
BssECI CCNNGG 5 cut(s) 373, 557, 575, 592, 828
BssMI GATC 4 cut(s) 107, 369, 463, 481
BssSI CACGAG 2 cut(s) 536, 816
BssT1I CCWWGG 2 cut(s) 575, 828
Bst2BI CACGAG 2 cut(s) 536, 816
Bst4CI ACNGT 1 cut(s) 734
Bst6I CTCTTC 1 cut(s) 645
BstBAI YACGTR 1 cut(s) 413
BstBI TTCGAA 1 cut(s) 850
BstC8I GCNNGC 3 cut(s) 312, 390, 554
BstDEI CTNAG 3 cut(s) 46, 235, 366
BstDSI CCRYGG 1 cut(s) 373
BstFNI CGCG 3 cut(s) 375, 392, 531
BstH2I RGCGCY 2 cut(s) 381, 492
BstHHI GCGC 2 cut(s) 380, 491
BstKTI GATC 4 cut(s) 110, 372, 466, 484
BstMAI GTCTC 4 cut(s) 224, 575, 642, 819
BstMBI GATC 4 cut(s) 107, 369, 463, 481
BstMCI CGRYCG 1 cut(s) 404
BstMWI GCNNNNNNNGC 6 cut(s) 86, 146, 394, 403, 495, 674
BstSCI CCNGG 1 cut(s) 268
BstUI CGCG 3 cut(s) 375, 392, 531
BstV1I GCAGC 1 cut(s) 12
BstV2I GAAGAC 2 cut(s) 614, 782
BstX2I RGATCY 1 cut(s) 369
BstYI RGATCY 1 cut(s) 369
BstZI CGGCCG 1 cut(s) 401
BsuRI GGCC 5 cut(s) 273, 317, 341, 403, 562
BtgI CCRYGG 1 cut(s) 373
BveI ACCTGC 3 cut(s) 161, 365, 682
Cac8I GCNNGC 3 cut(s) 312, 390, 554
CfoI GCGC 2 cut(s) 380, 491
Cfr10I RCCGGY 2 cut(s) 296, 310
Cfr13I GGNCC 2 cut(s) 261, 271
Cfr42I CCGCGG 1 cut(s) 376
CseI GACGC 3 cut(s) 381, 433, 691
Csp6I GTAC 1 cut(s) 656
CspCI CAANNNNNGTGG 2 cut(s) 660, 695
CviAII CATG 2 cut(s) 40, 618
CviQI GTAC 1 cut(s) 656
DdeI CTNAG 3 cut(s) 46, 235, 366
DpnI GATC 4 cut(s) 109, 371, 465, 483
DpnII GATC 4 cut(s) 107, 369, 463, 481
DrdI GACNNNNNNGTC 2 cut(s) 430, 784
DseDI GACNNNNNNGTC 2 cut(s) 430, 784
EaeI YGGCCR 1 cut(s) 401
EagI CGGCCG 1 cut(s) 401
Eam1104I CTCTTC 1 cut(s) 645
EarI CTCTTC 1 cut(s) 645
EciI GGCGGA 1 cut(s) 502
EclXI CGGCCG 1 cut(s) 401
Eco130I CCWWGG 2 cut(s) 575, 828
Eco32I GATATC 1 cut(s) 241
Eco47I GGWCC 1 cut(s) 261
Eco47III AGCGCT 1 cut(s) 490
Eco52I CGGCCG 1 cut(s) 401
Eco57I CTGAAG 2 cut(s) 608, 813
Eco72I CACGTG 1 cut(s) 413
EcoRV GATATC 1 cut(s) 241
EcoT14I CCWWGG 2 cut(s) 575, 828
ErhI CCWWGG 2 cut(s) 575, 828
Esp3I CGTCTC 1 cut(s) 575
FaeI CATG 2 cut(s) 43, 621
FaiI YATR 6 cut(s) 41, 56, 158, 213, 619, 711
FalI AAGNNNNNCTT 2 cut(s) 643, 675
FaqI GGGAC 2 cut(s) 574, 733
FatI CATG 2 cut(s) 39, 617
Fnu4HI GCNGC 7 cut(s) 26, 29, 81, 315, 328, 376, 404
Fsp4HI GCNGC 7 cut(s) 26, 29, 81, 315, 328, 376, 404
GlaI GCGC 2 cut(s) 379, 490
GluI GCNGC 7 cut(s) 26, 29, 81, 315, 328, 376, 404
HaeII RGCGCY 2 cut(s) 381, 492
HaeIII GGCC 5 cut(s) 273, 317, 341, 403, 562
HapII CCGG 5 cut(s) 269, 297, 311, 400, 461
HgaI GACGC 3 cut(s) 381, 433, 691
HhaI GCGC 2 cut(s) 380, 491
Hin1II CATG 2 cut(s) 43, 621
Hin6I GCGC 2 cut(s) 378, 489
HinP1I GCGC 2 cut(s) 378, 489
HinfI GANTC 8 cut(s) 58, 103, 114, 335, 362, 587, 614, 812
HpaII CCGG 5 cut(s) 269, 297, 311, 400, 461
HphI GGTGA 1 cut(s) 176
Hpy166II GTNNAC 1 cut(s) 127
Hpy188I TCNGA 5 cut(s) 168, 238, 354, 439, 486
Hpy188III TCNNGA 4 cut(s) 111, 461, 818, 841
Hpy8I GTNNAC 1 cut(s) 127
Hpy99I CGWCG 5 cut(s) 172, 397, 427, 524, 570
HpyAV CCTTC 3 cut(s) 328, 554, 574
HpyCH4III ACNGT 1 cut(s) 734
HpyCH4IV ACGT 2 cut(s) 412, 522
HpyCH4V TGCA 4 cut(s) 156, 201, 416, 799
HpyF10VI GCNNNNNNNGC 6 cut(s) 86, 146, 394, 403, 495, 674
HpyF3I CTNAG 3 cut(s) 46, 235, 366
HpySE526I ACGT 2 cut(s) 412, 522
Hsp92II CATG 2 cut(s) 43, 621
HspAI GCGC 2 cut(s) 378, 489
Kpn2I TCCGGA 1 cut(s) 460
KroI GCCGGC 1 cut(s) 310
KroNI GCCGGC 1 cut(s) 312
KspI CCGCGG 1 cut(s) 376
Kzo9I GATC 4 cut(s) 107, 369, 463, 481
LmnI GCTCC 4 cut(s) 78, 402, 546, 673
Lsp1109I GCAGC 1 cut(s) 12
LweI GCATC 2 cut(s) 210, 875
MaeII ACGT 2 cut(s) 412, 522
MaeIII GTNAC 1 cut(s) 408
MalI GATC 4 cut(s) 109, 371, 465, 483
MbiI CCGCTC 1 cut(s) 14
MboI GATC 4 cut(s) 107, 369, 463, 481
MboII GAAGA 5 cut(s) 614, 632, 643, 787, 872
MfeI CAATTG 1 cut(s) 196
MflI RGATCY 1 cut(s) 369
MhlI GDGCHC 4 cut(s) 75, 543, 670, 754
MluCI AATT 5 cut(s) 196, 440, 804, 874, 887
MlyI GAGTC 6 cut(s) 97, 329, 356, 596, 623, 821
MmeI TCCRAC 1 cut(s) 191
MnlI CCTC 9 cut(s) 55, 151, 284, 445, 537, 567, 573, 601, 602
MroI TCCGGA 1 cut(s) 460
MroNI GCCGGC 1 cut(s) 310
MseI TTAA 3 cut(s) 6, 99, 767
MslI CAYNNNNRTG 2 cut(s) 122, 900
MspA1I CMGCKG 2 cut(s) 375, 791
MspI CCGG 5 cut(s) 269, 297, 311, 400, 461
MspR9I CCNGG 1 cut(s) 270
MunI CAATTG 1 cut(s) 196
Mva1269I GAATGC 1 cut(s) 468
MvnI CGCG 3 cut(s) 375, 392, 531
MwoI GCNNNNNNNGC 6 cut(s) 86, 146, 394, 403, 495, 674
NaeI GCCGGC 1 cut(s) 312
NciI CCSGG 1 cut(s) 270
NdeII GATC 4 cut(s) 107, 369, 463, 481
NgoMIV GCCGGC 1 cut(s) 310
NlaIII CATG 2 cut(s) 43, 621
NmeAIII GCCGAG 2 cut(s) 317, 538
NmuCI GTSAC 1 cut(s) 408
NspV TTCGAA 1 cut(s) 850
OliI CACNNNNGTG 1 cut(s) 122
PaqCI CACCTGC 2 cut(s) 161, 682
PcsI WCGNNNNNNNCGW 2 cut(s) 528, 565
PctI GAATGC 1 cut(s) 468
PdiI GCCGGC 1 cut(s) 312
PfeI GAWTC 2 cut(s) 58, 114
PflFI GACNNNGTC 1 cut(s) 427
PkrI GCNGC 7 cut(s) 27, 30, 82, 316, 329, 377, 405
PleI GAGTC 6 cut(s) 97, 329, 356, 595, 622, 820
PmaCI CACGTG 1 cut(s) 413
PmlI CACGTG 1 cut(s) 413
PpsI GAGTC 6 cut(s) 97, 329, 356, 595, 622, 820
Ppu21I YACGTR 1 cut(s) 413
PspCI CACGTG 1 cut(s) 413
PspPI GGNCC 2 cut(s) 261, 271
PsuI RGATCY 1 cut(s) 369
PsyI GACNNNGTC 1 cut(s) 427
PvuII CAGCTG 1 cut(s) 791
RsaI GTAC 1 cut(s) 657
RsaNI GTAC 1 cut(s) 656
RseI CAYNNNNRTG 2 cut(s) 122, 900
SacII CCGCGG 1 cut(s) 376
SaqAI TTAA 3 cut(s) 6, 99, 767
SatI GCNGC 7 cut(s) 26, 29, 81, 315, 328, 376, 404
Sau3AI GATC 4 cut(s) 107, 369, 463, 481
Sau96I GGNCC 2 cut(s) 261, 271
SchI GAGTC 6 cut(s) 97, 329, 356, 596, 623, 821
ScrFI CCNGG 1 cut(s) 270
SduI GDGCHC 4 cut(s) 75, 543, 670, 754
SfaNI GCATC 2 cut(s) 210, 875
Sfr303I CCGCGG 1 cut(s) 376
SfuI TTCGAA 1 cut(s) 850
SgrBI CCGCGG 1 cut(s) 376
SinI GGWCC 1 cut(s) 261
SmiMI CAYNNNNRTG 2 cut(s) 122, 900
Sse9I AATT 5 cut(s) 196, 440, 804, 874, 887
SspI AATATT 1 cut(s) 707
StyD4I CCNGG 1 cut(s) 268
StyI CCWWGG 2 cut(s) 575, 828
TaaI ACNGT 1 cut(s) 734
TaiI ACGT 2 cut(s) 415, 525
TaqI TCGA 5 cut(s) 16, 106, 480, 519, 850
TaqII GACCGA 1 cut(s) 584
TasI AATT 5 cut(s) 196, 440, 804, 874, 887
TauI GCSGC 6 cut(s) 31, 83, 317, 330, 378, 406
TfiI GAWTC 2 cut(s) 58, 114
Tru1I TTAA 3 cut(s) 6, 99, 767
Tru9I TTAA 3 cut(s) 6, 99, 767
TseFI GTSAC 1 cut(s) 408
TseI GCWGC 1 cut(s) 25
Tsp45I GTSAC 1 cut(s) 408
Tth111I GACNNNGTC 1 cut(s) 427
VpaK11BI GGWCC 1 cut(s) 261
XapI RAATTY 2 cut(s) 440, 804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.