Rmu_sc0004848.1_g000009

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004848.1
OG0017403
Physical Location & Seq
Forward (+)
40536 .. 41297
762 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 762 bp
atgtctttgtggctgattggcatgccacataatgagatagccattttttctagttggatcagtaaggcattgccaggtttcaaagaaggtgttatattacttttgcttgaattgattacgatttggataaaatatacagttggcgacagattcttgggaatagcggcaaacattgatacgtcctgctcatgtaatcaaatctttgaagctactcttgagcatcttgttttagccagcagggttatggtggcaaatgcccaggaagtggaggtagactctgttgacagcaaaattggagacacatacttacccttgtctgggtatgatgaggctgtttttgcttatgagaaggcgctaaatgtgtttaagaccactaaaggagagaatcatccatctgttggttcagttttcatccatgtggcagatttgtataataggacaggtaaagttactaaatcaatatcatactgcgagaatgctcttcgaggacatagtgtcaattacttgaaggttgtggcatctgtggtgattggatttactgttttgtttacttggcatttgattaagggtgttaaagaggactcgaaaaaccactgcaaatggtctagtggttcttgcctagttgggtgtgctccccaacctaggttcgaaccccgaagctgtcaaagtggccaggcactgcgctacaatgcacagttggagcatttcacatgcgccgaaggggtttatcttgggcctaggaagcctttgggttccccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001655 GO:0001822 GO:0001889 GO:0001894 GO:0001895 GO:0001947 GO:0002009 GO:0003007 GO:0003143 GO:0003205 GO:0003230 GO:0003279 GO:0003283 GO:0003341 GO:0003351 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005929 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007275 GO:0007368 GO:0007369 GO:0007389 GO:0007507 GO:0008150 GO:0009653 GO:0009790 GO:0009799 GO:0009855 GO:0009887 GO:0009888 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016043 GO:0022603 GO:0022607 GO:0023051 GO:0023057 GO:0030030 GO:0030031 GO:0030111 GO:0030178 GO:0030323 GO:0030324 GO:0031016 GO:0032501 GO:0032502 GO:0035050 GO:0035239 GO:0035295 GO:0035469 GO:0042592 GO:0042995 GO:0043226 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0044782 GO:0045494 GO:0045595 GO:0045596 GO:0045995 GO:0048496 GO:0048513 GO:0048519 GO:0048523 GO:0048562 GO:0048565 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048729 GO:0048731 GO:0048732 GO:0048856 GO:0048871 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051239 GO:0051960 GO:0055123 GO:0060026 GO:0060027 GO:0060249 GO:0060271 GO:0060287 GO:0060429 GO:0060541 GO:0060562 GO:0060828 GO:0060993 GO:0061008 GO:0061371 GO:0065007 GO:0065008 GO:0070925 GO:0071840 GO:0071907 GO:0071908 GO:0071909 GO:0071910 GO:0072001 GO:0072189 GO:0072359 GO:0090090 GO:0090175 GO:0090178 GO:0120025 GO:0120031 GO:0120036 GO:1905276 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000095 GO:2000167
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_10 TPR_12 TPR_7 TPR_8

Protein Analysis

253

Amino Acids

27.88

Weight (kDa)

7.06

Isoelectric Point (pI)

30.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_12 PF13424 94 - 161 7.7e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 265, 398
AccI GTMKAC 1 cut(s) 273
AciI CCGC 1 cut(s) 164
AclWI GGATC 1 cut(s) 65
AcoI YGGCCR 1 cut(s) 670
AfiI CCNNNNNNNGG 5 cut(s) 265, 317, 318, 398, 642
AgsI TTSAA 4 cut(s) 82, 110, 206, 508
AhdI GACNNNNNGTC 1 cut(s) 494
AjnI CCWGG 3 cut(s) 73, 258, 672
AluBI AGCT 2 cut(s) 209, 660
AluI AGCT 2 cut(s) 209, 660
Alw21I GWGCWC 1 cut(s) 634
Alw26I GTCTC 1 cut(s) 291
AlwI GGATC 1 cut(s) 65
AlwNI CAGNNNCTG 1 cut(s) 679
AoxI GGCC 2 cut(s) 670, 734
AspA2I CCTAGG 2 cut(s) 641, 737
AspLEI GCGC 3 cut(s) 355, 684, 716
AspS9I GGNCC 1 cut(s) 734
AsuHPI GGTGA 1 cut(s) 538
AsuII TTCGAA 1 cut(s) 648
AvrII CCTAGG 2 cut(s) 641, 737
BalI TGGCCA 1 cut(s) 672
Bbv12I GWGCWC 1 cut(s) 634
BccI CCATC 1 cut(s) 400
BciT130I CCWGG 3 cut(s) 75, 260, 674
BcoDI GTCTC 1 cut(s) 291
BfaI CTAG 5 cut(s) 51, 606, 620, 642, 738
BfoI RGCGCY 1 cut(s) 356
BisI GCNGC 1 cut(s) 165
BlnI CCTAGG 2 cut(s) 641, 737
BlsI GCNGC 1 cut(s) 166
Bme1390I CCNGG 3 cut(s) 75, 260, 674
BmeRI GACNNNNNGTC 1 cut(s) 494
BmgT120I GGNCC 1 cut(s) 734
BmiI GGNNCC 1 cut(s) 754
BmrFI CCNGG 3 cut(s) 75, 260, 674
BmsI GCATC 2 cut(s) 229, 527
BplI GAGNNNNNCTC 2 cut(s) 260, 292
Bpu14I TTCGAA 1 cut(s) 648
BpuEI CTTGAG 1 cut(s) 236
BsaJI CCNNGG 3 cut(s) 258, 641, 737
Bsc4I CCNNNNNNNGG 5 cut(s) 265, 317, 318, 398, 642
Bse3DI GCAATG 1 cut(s) 68
BseBI CCWGG 3 cut(s) 75, 260, 674
BseDI CCNNGG 3 cut(s) 258, 641, 737
BseGI GGATG 2 cut(s) 388, 411
BseLI CCNNNNNNNGG 5 cut(s) 265, 317, 318, 398, 642
BseMI GCAATG 1 cut(s) 68
BshFI GGCC 2 cut(s) 672, 736
BsiHKAI GWGCWC 1 cut(s) 634
BslI CCNNNNNNNGG 5 cut(s) 265, 317, 318, 398, 642
BsmAI GTCTC 1 cut(s) 291
BsmI GAATGC 1 cut(s) 481
BsnI GGCC 2 cut(s) 672, 736
Bsp119I TTCGAA 1 cut(s) 648
Bsp1286I GDGCHC 1 cut(s) 634
Bsp143I GATC 1 cut(s) 57
BspACI CCGC 1 cut(s) 164
BspANI GGCC 2 cut(s) 672, 736
BspLI GGNNCC 1 cut(s) 754
BspPI GGATC 1 cut(s) 65
BspQI GCTCTTC 1 cut(s) 486
BspT104I TTCGAA 1 cut(s) 648
BsrDI GCAATG 1 cut(s) 68
BssECI CCNNGG 3 cut(s) 258, 641, 737
BssMI GATC 1 cut(s) 57
BssT1I CCWWGG 2 cut(s) 641, 737
Bst2UI CCWGG 3 cut(s) 75, 260, 674
Bst4CI ACNGT 3 cut(s) 139, 541, 696
Bst6I CTCTTC 1 cut(s) 486
BstBI TTCGAA 1 cut(s) 648
BstC8I GCNNGC 2 cut(s) 23, 235
BstF5I GGATG 2 cut(s) 388, 411
BstH2I RGCGCY 1 cut(s) 356
BstHHI GCGC 3 cut(s) 355, 684, 716
BstKTI GATC 1 cut(s) 60
BstMAI GTCTC 1 cut(s) 291
BstMBI GATC 1 cut(s) 57
BstMWI GCNNNNNNNGC 2 cut(s) 338, 742
BstNI CCWGG 3 cut(s) 75, 260, 674
BstNSI RCATGY 2 cut(s) 25, 714
BstSCI CCNGG 3 cut(s) 73, 258, 672
BsuRI GGCC 2 cut(s) 672, 736
BtsCI GGATG 2 cut(s) 388, 411
BtsI GCAGTG 2 cut(s) 592, 677
BtsIMutI CAGTG 2 cut(s) 592, 677
Cac8I GCNNGC 2 cut(s) 23, 235
CaiI CAGNNNCTG 1 cut(s) 679
CfoI GCGC 3 cut(s) 355, 684, 716
Cfr13I GGNCC 1 cut(s) 734
CviAII CATG 4 cut(s) 22, 189, 416, 711
CviJI RGCY 9 cut(s) 13, 41, 209, 233, 332, 660, 672, 736, 745
CviKI_1 RGCY 9 cut(s) 13, 41, 209, 233, 332, 660, 672, 736, 745
DpnI GATC 1 cut(s) 59
DpnII GATC 1 cut(s) 57
DriI GACNNNNNGTC 1 cut(s) 494
EaeI YGGCCR 1 cut(s) 670
Eam1104I CTCTTC 1 cut(s) 486
Eam1105I GACNNNNNGTC 1 cut(s) 494
EarI CTCTTC 1 cut(s) 486
Eco130I CCWWGG 2 cut(s) 641, 737
EcoRII CCWGG 3 cut(s) 73, 258, 672
EcoT14I CCWWGG 2 cut(s) 641, 737
ErhI CCWWGG 2 cut(s) 641, 737
FaeI CATG 4 cut(s) 25, 192, 419, 714
FalI AAGNNNNNCTT 2 cut(s) 198, 230
FatI CATG 4 cut(s) 21, 188, 415, 710
FblI GTMKAC 1 cut(s) 273
Fnu4HI GCNGC 1 cut(s) 165
FokI GGATG 2 cut(s) 375, 398
Fsp4HI GCNGC 1 cut(s) 165
FspBI CTAG 5 cut(s) 51, 606, 620, 642, 738
GlaI GCGC 3 cut(s) 354, 683, 715
GluI GCNGC 1 cut(s) 165
HaeII RGCGCY 1 cut(s) 356
HaeIII GGCC 2 cut(s) 672, 736
HhaI GCGC 3 cut(s) 355, 684, 716
Hin1II CATG 4 cut(s) 25, 192, 419, 714
Hin6I GCGC 3 cut(s) 353, 682, 714
HinP1I GCGC 3 cut(s) 353, 682, 714
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HinfI GANTC 4 cut(s) 150, 275, 385, 581
HphI GGTGA 1 cut(s) 538
Hpy166II GTNNAC 3 cut(s) 274, 283, 549
Hpy188III TCNNGA 1 cut(s) 215
Hpy8I GTNNAC 3 cut(s) 274, 283, 549
HpyAV CCTTC 4 cut(s) 80, 343, 502, 713
HpyCH4III ACNGT 3 cut(s) 139, 541, 696
HpyCH4IV ACGT 1 cut(s) 179
HpyCH4V TGCA 2 cut(s) 597, 692
HpyF10VI GCNNNNNNNGC 2 cut(s) 338, 742
HpySE526I ACGT 1 cut(s) 179
Hsp92II CATG 4 cut(s) 25, 192, 419, 714
HspAI GCGC 3 cut(s) 353, 682, 714
Kzo9I GATC 1 cut(s) 57
LguI GCTCTTC 1 cut(s) 486
LmnI GCTCC 2 cut(s) 637, 700
LweI GCATC 2 cut(s) 229, 527
MaeI CTAG 5 cut(s) 51, 606, 620, 642, 738
MaeII ACGT 1 cut(s) 179
MaeIII GTNAC 1 cut(s) 448
MalI GATC 1 cut(s) 59
MboI GATC 1 cut(s) 57
MboII GAAGA 1 cut(s) 473
MhlI GDGCHC 1 cut(s) 634
MlsI TGGCCA 1 cut(s) 672
MluCI AATT 3 cut(s) 110, 291, 499
MluNI TGGCCA 1 cut(s) 672
MlyI GAGTC 2 cut(s) 269, 575
MmeI TCCRAC 2 cut(s) 35, 678
MnlI CCTC 4 cut(s) 262, 322, 479, 571
Mox20I TGGCCA 1 cut(s) 672
MscI TGGCCA 1 cut(s) 672
MseI TTAA 3 cut(s) 366, 564, 573
MslI CAYNNNNRTG 1 cut(s) 416
Msp20I TGGCCA 1 cut(s) 672
MspR9I CCNGG 3 cut(s) 75, 260, 674
Mva1269I GAATGC 1 cut(s) 481
MvaI CCWGG 3 cut(s) 75, 260, 674
MwoI GCNNNNNNNGC 2 cut(s) 338, 742
NdeII GATC 1 cut(s) 57
NlaIII CATG 4 cut(s) 25, 192, 419, 714
NlaIV GGNNCC 1 cut(s) 754
NspI RCATGY 2 cut(s) 25, 714
NspV TTCGAA 1 cut(s) 648
PaeI GCATGC 1 cut(s) 25
PciSI GCTCTTC 1 cut(s) 486
PctI GAATGC 1 cut(s) 481
PfeI GAWTC 2 cut(s) 150, 385
PflMI CCANNNNNTGG 2 cut(s) 265, 398
PkrI GCNGC 1 cut(s) 166
PleI GAGTC 2 cut(s) 269, 575
PpsI GAGTC 2 cut(s) 269, 575
Psp6I CCWGG 3 cut(s) 73, 258, 672
PspGI CCWGG 3 cut(s) 73, 258, 672
PspN4I GGNNCC 1 cut(s) 754
PspPI GGNCC 1 cut(s) 734
PstNI CAGNNNCTG 1 cut(s) 679
RseI CAYNNNNRTG 1 cut(s) 416
SapI GCTCTTC 1 cut(s) 486
SaqAI TTAA 3 cut(s) 366, 564, 573
SatI GCNGC 1 cut(s) 165
Sau3AI GATC 1 cut(s) 57
Sau96I GGNCC 1 cut(s) 734
SchI GAGTC 2 cut(s) 269, 575
ScrFI CCNGG 3 cut(s) 75, 260, 674
SduI GDGCHC 1 cut(s) 634
SfaNI GCATC 2 cut(s) 229, 527
SfuI TTCGAA 1 cut(s) 648
SmiMI CAYNNNNRTG 1 cut(s) 416
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
SphI GCATGC 1 cut(s) 25
Sse9I AATT 3 cut(s) 110, 291, 499
SsiI CCGC 1 cut(s) 164
SspMI CTAG 5 cut(s) 51, 606, 620, 642, 738
StyD4I CCNGG 3 cut(s) 73, 258, 672
StyI CCWWGG 2 cut(s) 641, 737
TaaI ACNGT 3 cut(s) 139, 541, 696
TaiI ACGT 1 cut(s) 182
TaqI TCGA 3 cut(s) 484, 584, 648
TasI AATT 3 cut(s) 110, 291, 499
TauI GCSGC 1 cut(s) 167
TfiI GAWTC 2 cut(s) 150, 385
Tru1I TTAA 3 cut(s) 366, 564, 573
Tru9I TTAA 3 cut(s) 366, 564, 573
TscAI CASTG 2 cut(s) 599, 684
TspDTI ATGAA 1 cut(s) 400
TspRI CASTG 2 cut(s) 599, 684
Van91I CCANNNNNTGG 2 cut(s) 265, 398
XceI RCATGY 2 cut(s) 25, 714
XcmI CCANNNNNNNNNTGG 1 cut(s) 241
XmaJI CCTAGG 2 cut(s) 641, 737
XmiI GTMKAC 1 cut(s) 273
XspI CTAG 5 cut(s) 51, 606, 620, 642, 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.