Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004874.1

Orthogroup ID

OG0009331

Physical Location & Seq

Genomic Coordinates Forward (+)

87004 .. 89275

Gene Structure 2272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

atgtgccatcagcatggaatgcgttgccttggcataccaaacaccaagaacctcaatgagatcacatcaattgaggaagcacaagaattgtggaagaggatacaagcacagcaaggtatgaacaagtggcgcccagaccttgaagaagagtatgaagacagagagggcaacatctataataagaagacatatactgatctgcagcgagagatgatcctgaatatcccagtagtacctcgtagtcgacagccaaatgactgcgtcctcttcaacaccgtgtctaaaaagtaccagaccatgtccatcgtagctatcctccccgccaatataacaaagcggcctaaaaaaaacctcatccgagaacccacatgctccgccgcctcccgtcgacccctaacccagcgaaccatacccaacaatgtcgcaaaccaactccgccttcccacccagcgccgaccgctcctattccgaacaaaggtctgcacaactcgacccagtcgcagccacacctcacccttgaccagactagaaccaccattaggtaagccgccgacatcaatcaaggcagatgaaagtcacctgcaatacttccgcctccaccacctcaaagacaccaaatacccttccggcaatagccaccgtgcatcggcgagactagaggcccacaccagagccgggacgtcgccagacgagaccgcgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0005829 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043900 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045694 GO:0046483 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0065003 GO:0065007 GO:0070013 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF3449 SF3A3 SF3a60_bindingd Telomere_Sde2_2

Protein Analysis

233

Amino Acids

26.82

Weight (kDa)

9.98

Isoelectric Point (pI)

61.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SF3a60_Prp9_C	PF11931	3 - 72	1.1e-20	SF3a60/Prp9 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06160
fragaria_vesca	FvH4_1g22860 FvH4_5g28470 FvH4_7g05370 FvH4_7g06390
malus_domestica	MD01G1219700.v1.1 MD07G1290300.v1.1
prunus_persica	Prupe.2G311500_v2.0.a1
pyrus_communis	pycom01g22950 pycom07g26290
rosa_chinensis	RchiOBHm_Chr1g0331941
rosa_laevigata	RLG00000025855 RLG00000029702
rosa_multiflora	Rmu_sc0004874.1_g000018 Rmu_sc0008128.1_g000009
rosa_roxburghii	Rroxscaffold_4G00318600
rosa_rugosa	Rorug01G0097000
rosa_samantha	Rh1AG121100 Rh1BG092700 Rh1CG115900 Rh1DG127000
rosa_wichuraiana	Rw1G009880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	588
AatII	GACGTC	1 cut(s)	683
Acc36I	ACCTGC	1 cut(s)	588
AccB1I	GGYRCC	1 cut(s)	129
AccBSI	CCGCTC	1 cut(s)	460
AccI	GTMKAC	2 cut(s)	244, 388
AccII	CGCG	1 cut(s)	698
AciI	CCGC	9 cut(s)	321, 337, 375, 378, 436, 458, 548, 592, 696
AclWI	GGATC	1 cut(s)	208
AcyI	GRCGYC	2 cut(s)	130, 680
AfaI	GTAC	2 cut(s)	234, 290
AfiI	CCNNNNNNNGG	4 cut(s)	475, 539, 646, 675
AgsI	TTSAA	2 cut(s)	143, 271
AjuI	GAANNNNNNNTTGG	2 cut(s)	423, 455
AluBI	AGCT	1 cut(s)	311
AluI	AGCT	1 cut(s)	311
Alw26I	GTCTC	2 cut(s)	646, 686
AlwI	GGATC	1 cut(s)	208
AoxI	GGCC	2 cut(s)	338, 660
ApeKI	GCWGC	2 cut(s)	202, 501
AspLEI	GCGC	2 cut(s)	132, 453
AspS9I	GGNCC	1 cut(s)	661
AsuC2I	CCSGG	1 cut(s)	676
AsuHPI	GGTGA	2 cut(s)	504, 569
BanI	GGYRCC	1 cut(s)	129
BbsI	GAAGAC	2 cut(s)	162, 191
BbvI	GCAGC	2 cut(s)	214, 513
BccI	CCATC	2 cut(s)	15, 311
BciVI	GTATCC	1 cut(s)	93
BcnI	CCSGG	1 cut(s)	676
BcoDI	GTCTC	2 cut(s)	646, 686
BfaI	CTAG	2 cut(s)	527, 656
BfmI	CTRYAG	1 cut(s)	200
BfoI	RGCGCY	2 cut(s)	133, 454
BfuAI	ACCTGC	1 cut(s)	588
BfuI	GTATCC	1 cut(s)	93
BisI	GCNGC	5 cut(s)	203, 338, 378, 502, 548
BlsI	GCNGC	5 cut(s)	204, 339, 379, 503, 549
Bme1390I	CCNGG	1 cut(s)	676
BmgT120I	GGNCC	1 cut(s)	661
BmiI	GGNNCC	1 cut(s)	131
BmrFI	CCNGG	1 cut(s)	676
BmrI	ACTGGG	2 cut(s)	221, 489
BmsI	GCATC	1 cut(s)	653
BmuI	ACTGGG	2 cut(s)	221, 489
BpiI	GAAGAC	2 cut(s)	162, 191
BpuMI	CCSGG	1 cut(s)	676
BsaHI	GRCGYC	2 cut(s)	130, 680
BsaI	GGTCTC	1 cut(s)	686
BsaJI	CCNNGG	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	4 cut(s)	475, 539, 646, 675
Bse1I	ACTGG	2 cut(s)	227, 495
BseDI	CCNNGG	1 cut(s)	28
BseGI	GGATG	1 cut(s)	354
BseLI	CCNNNNNNNGG	4 cut(s)	475, 539, 646, 675
BseNI	ACTGG	2 cut(s)	227, 495
BseXI	GCAGC	2 cut(s)	214, 513
BseYI	CCCAGC	2 cut(s)	399, 447
BsgI	GTGCAG	1 cut(s)	466
Bsh1236I	CGCG	1 cut(s)	698
Bsh1285I	CGRYCG	1 cut(s)	458
BshFI	GGCC	2 cut(s)	340, 662
BshNI	GGYRCC	1 cut(s)	129
BsiEI	CGRYCG	1 cut(s)	458
BsiSI	CCGG	2 cut(s)	627, 675
BslFI	GGGAC	1 cut(s)	691
BslI	CCNNNNNNNGG	4 cut(s)	475, 539, 646, 675
BsmAI	GTCTC	2 cut(s)	646, 686
BsmFI	GGGAC	1 cut(s)	691
BsmI	GAATGC	1 cut(s)	24
BsnI	GGCC	2 cut(s)	340, 662
Bso31I	GGTCTC	1 cut(s)	686
Bsp143I	GATC	3 cut(s)	60, 196, 213
BspACI	CCGC	9 cut(s)	321, 337, 375, 378, 436, 458, 548, 592, 696
BspANI	GGCC	2 cut(s)	340, 662
BspFNI	CGCG	1 cut(s)	698
BspLI	GGNNCC	1 cut(s)	131
BspMAI	CTGCAG	1 cut(s)	204
BspMI	ACCTGC	1 cut(s)	588
BspPI	GGATC	1 cut(s)	208
BspT107I	GGYRCC	1 cut(s)	129
BspTNI	GGTCTC	1 cut(s)	686
BsrBI	CCGCTC	1 cut(s)	460
BsrI	ACTGG	2 cut(s)	227, 495
BssECI	CCNNGG	1 cut(s)	28
BssMI	GATC	3 cut(s)	60, 196, 213
BssNI	GRCGYC	2 cut(s)	130, 680
BssT1I	CCWWGG	1 cut(s)	28
Bst4CI	ACNGT	2 cut(s)	277, 641
Bst6I	CTCTTC	3 cut(s)	89, 141, 272
BstACI	GRCGYC	2 cut(s)	130, 680
BstAPI	GCANNNNNTGC	1 cut(s)	19
BstF5I	GGATG	1 cut(s)	354
BstFNI	CGCG	1 cut(s)	698
BstH2I	RGCGCY	2 cut(s)	133, 454
BstHHI	GCGC	2 cut(s)	132, 453
BstKTI	GATC	3 cut(s)	63, 199, 216
BstMAI	GTCTC	2 cut(s)	646, 686
BstMBI	GATC	3 cut(s)	60, 196, 213
BstMCI	CGRYCG	1 cut(s)	458
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 457
BstNSI	RCATGY	1 cut(s)	372
BstSCI	CCNGG	1 cut(s)	674
BstSFI	CTRYAG	1 cut(s)	200
BstUI	CGCG	1 cut(s)	698
BstV1I	GCAGC	2 cut(s)	214, 513
BstV2I	GAAGAC	2 cut(s)	162, 191
BstXI	CCANNNNNNTGG	1 cut(s)	14
BsuI	GTATCC	1 cut(s)	93
BsuRI	GGCC	2 cut(s)	340, 662
BtsCI	GGATG	1 cut(s)	354
BveI	ACCTGC	1 cut(s)	588
CfoI	GCGC	2 cut(s)	132, 453
Cfr13I	GGNCC	1 cut(s)	661
CseI	GACGC	1 cut(s)	250
Csp6I	GTAC	2 cut(s)	233, 289
CspCI	CAANNNNNGTGG	2 cut(s)	71, 106
CviAII	CATG	3 cut(s)	14, 298, 369
CviJI	RGCY	8 cut(s)	250, 311, 340, 504, 547, 636, 662, 674
CviKI_1	RGCY	8 cut(s)	250, 311, 340, 504, 547, 636, 662, 674
CviQI	GTAC	2 cut(s)	233, 289
DinI	GGCGCC	1 cut(s)	131
DpnI	GATC	3 cut(s)	62, 198, 215
DpnII	GATC	3 cut(s)	60, 196, 213
Eam1104I	CTCTTC	3 cut(s)	89, 141, 272
EarI	CTCTTC	3 cut(s)	89, 141, 272
EciI	GGCGGA	3 cut(s)	364, 425, 581
Eco130I	CCWWGG	1 cut(s)	28
Eco31I	GGTCTC	1 cut(s)	686
EcoT14I	CCWWGG	1 cut(s)	28
EgeI	GGCGCC	1 cut(s)	131
EheI	GGCGCC	1 cut(s)	131
ErhI	CCWWGG	1 cut(s)	28
FaeI	CATG	3 cut(s)	17, 301, 372
FaqI	GGGAC	1 cut(s)	691
FatI	CATG	3 cut(s)	13, 297, 368
FauI	CCCGC	1 cut(s)	328
FblI	GTMKAC	2 cut(s)	244, 388
Fnu4HI	GCNGC	5 cut(s)	203, 338, 378, 502, 548
FokI	GGATG	1 cut(s)	341
Fsp4HI	GCNGC	5 cut(s)	203, 338, 378, 502, 548
FspBI	CTAG	2 cut(s)	527, 656
GlaI	GCGC	2 cut(s)	131, 452
GluI	GCNGC	5 cut(s)	203, 338, 378, 502, 548
GsaI	CCCAGC	2 cut(s)	403, 451
HaeII	RGCGCY	2 cut(s)	133, 454
HaeIII	GGCC	2 cut(s)	340, 662
HapII	CCGG	2 cut(s)	627, 675
HgaI	GACGC	1 cut(s)	250
HhaI	GCGC	2 cut(s)	132, 453
Hin1I	GRCGYC	2 cut(s)	130, 680
Hin1II	CATG	3 cut(s)	17, 301, 372
Hin6I	GCGC	2 cut(s)	130, 451
HinP1I	GCGC	2 cut(s)	130, 451
HincII	GTYRAC	2 cut(s)	245, 389
HindII	GTYRAC	2 cut(s)	245, 389
HpaII	CCGG	2 cut(s)	627, 675
HphI	GGTGA	2 cut(s)	504, 569
Hpy166II	GTNNAC	2 cut(s)	245, 389
Hpy188I	TCNGA	2 cut(s)	359, 470
Hpy188III	TCNNGA	1 cut(s)	217
Hpy8I	GTNNAC	2 cut(s)	245, 389
Hpy99I	CGWCG	2 cut(s)	390, 685
HpyAV	CCTTC	2 cut(s)	449, 633
HpyCH4III	ACNGT	2 cut(s)	277, 641
HpyCH4IV	ACGT	1 cut(s)	680
HpyCH4V	TGCA	4 cut(s)	202, 483, 583, 644
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 457
HpySE526I	ACGT	1 cut(s)	680
Hsp92I	GRCGYC	2 cut(s)	130, 680
Hsp92II	CATG	3 cut(s)	17, 301, 372
HspAI	GCGC	2 cut(s)	130, 451
KasI	GGCGCC	1 cut(s)	129
Kzo9I	GATC	3 cut(s)	60, 196, 213
LmnI	GCTCC	2 cut(s)	377, 465
Lsp1109I	GCAGC	2 cut(s)	214, 513
LweI	GCATC	1 cut(s)	653
MaeI	CTAG	2 cut(s)	527, 656
MaeII	ACGT	1 cut(s)	680
MaeIII	GTNAC	1 cut(s)	575
MalI	GATC	3 cut(s)	62, 198, 215
MbiI	CCGCTC	1 cut(s)	460
MboI	GATC	3 cut(s)	60, 196, 213
MboII	GAAGA	6 cut(s)	106, 155, 158, 167, 196, 259
MfeI	CAATTG	1 cut(s)	69
MluCI	AATT	2 cut(s)	69, 86
Mly113I	GGCGCC	1 cut(s)	130
MslI	CAYNNNNRTG	1 cut(s)	12
MspI	CCGG	2 cut(s)	627, 675
MspR9I	CCNGG	1 cut(s)	676
MunI	CAATTG	1 cut(s)	69
Mva1269I	GAATGC	1 cut(s)	24
MvnI	CGCG	1 cut(s)	698
MwoI	GCNNNNNNNGC	2 cut(s)	19, 457
NarI	GGCGCC	1 cut(s)	130
NciI	CCSGG	1 cut(s)	676
NdeII	GATC	3 cut(s)	60, 196, 213
NlaIII	CATG	3 cut(s)	17, 301, 372
NlaIV	GGNNCC	1 cut(s)	131
NmuCI	GTSAC	1 cut(s)	575
NspI	RCATGY	1 cut(s)	372
PaqCI	CACCTGC	1 cut(s)	588
PctI	GAATGC	1 cut(s)	24
PflFI	GACNNNGTC	3 cut(s)	260, 298, 495
PkrI	GCNGC	5 cut(s)	204, 339, 379, 503, 549
PluTI	GGCGCC	1 cut(s)	133
PspFI	CCCAGC	2 cut(s)	399, 447
PspN4I	GGNNCC	1 cut(s)	131
PspPI	GGNCC	1 cut(s)	661
PstI	CTGCAG	1 cut(s)	204
PsyI	GACNNNGTC	3 cut(s)	260, 298, 495
RsaI	GTAC	2 cut(s)	234, 290
RsaNI	GTAC	2 cut(s)	233, 289
RseI	CAYNNNNRTG	1 cut(s)	12
SalI	GTCGAC	2 cut(s)	243, 387
SatI	GCNGC	5 cut(s)	203, 338, 378, 502, 548
Sau3AI	GATC	3 cut(s)	60, 196, 213
Sau96I	GGNCC	1 cut(s)	661
ScrFI	CCNGG	1 cut(s)	676
SfaNI	GCATC	1 cut(s)	653
SfcI	CTRYAG	1 cut(s)	200
SfoI	GGCGCC	1 cut(s)	131
SmiMI	CAYNNNNRTG	1 cut(s)	12
Sse9I	AATT	2 cut(s)	69, 86
SsiI	CCGC	9 cut(s)	321, 337, 375, 378, 436, 458, 548, 592, 696
SspDI	GGCGCC	1 cut(s)	129
SspMI	CTAG	2 cut(s)	527, 656
StyD4I	CCNGG	1 cut(s)	674
StyI	CCWWGG	1 cut(s)	28
TaaI	ACNGT	2 cut(s)	277, 641
TaiI	ACGT	1 cut(s)	683
TaqI	TCGA	3 cut(s)	244, 388, 490
TasI	AATT	2 cut(s)	69, 86
TauI	GCSGC	3 cut(s)	340, 380, 550
TseFI	GTSAC	1 cut(s)	575
TseI	GCWGC	2 cut(s)	202, 501
Tsp45I	GTSAC	1 cut(s)	575
TspDTI	ATGAA	3 cut(s)	134, 168, 585
Tth111I	GACNNNGTC	3 cut(s)	260, 298, 495
XceI	RCATGY	1 cut(s)	372
XmiI	GTMKAC	2 cut(s)	244, 388
XspI	CTAG	2 cut(s)	527, 656
ZraI	GACGTC	1 cut(s)	681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.