Region found in RelA / SpoT proteins
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g33820 FvH4_7g33820 |
| malus_domestica | MD07G1306500.v1.1 |
| prunus_persica | Prupe.2G324500_v2.0.a1 Prupe.2G324500_v2.0.a1 Prupe.2G324500_v2.0.a1 Prupe.2G324500_v2.0.a1 Prupe.2G324500_v2.0.a1 |
| pyrus_communis | pycom07g27950 |
| rosa_chinensis | RchiOBHm_Chr1g0383931 |
| rosa_laevigata | RLG00000026085 |
| rosa_multiflora | Rmu_sc0005139.1_g000026 |
| rosa_roxburghii | Rroxscaffold_4G00277130 |
| rosa_rugosa | Rorug01G0443100 Rorug01G0443200 Rorug01G0443400.1 Rorug01G0443500.1 |
| rosa_samantha | Rh1AG469100 Rh1CG439600 Rh1DG459600 |
| rosa_wichuraiana | Rw1G040330 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 284, 1188 |
| Acc36I | ACCTGC | 1 cut(s) | 976 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1028, 1547 |
| AciI | CCGC | 5 cut(s) | 94, 175, 184, 1922, 1962 |
| AclWI | GGATC | 5 cut(s) | 260, 537, 579, 592, 627 |
| AcoI | YGGCCR | 1 cut(s) | 1919 |
| AcsI | RAATTY | 2 cut(s) | 107, 520 |
| AcuI | CTGAAG | 3 cut(s) | 434, 1425, 1863 |
| AcvI | CACGTG | 2 cut(s) | 78, 272 |
| AfaI | GTAC | 4 cut(s) | 639, 688, 1095, 1601 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 17, 1028, 1500, 1547 |
| AflIII | ACRYGT | 2 cut(s) | 75, 271 |
| AgsI | TTSAA | 7 cut(s) | 15, 91, 526, 1127, 1324, 1475, 2063 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 971 |
| AjnI | CCWGG | 3 cut(s) | 146, 817, 1540 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 93, 125, 608, 640, 1602, 1634 |
| Alw21I | GWGCWC | 3 cut(s) | 503, 1008, 1562 |
| Alw26I | GTCTC | 7 cut(s) | 172, 202, 356, 701, 936, 1083, 1187 |
| Alw44I | GTGCAC | 2 cut(s) | 1004, 1558 |
| AlwI | GGATC | 5 cut(s) | 260, 537, 579, 592, 627 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1081, 1454, 1970 |
| AoxI | GGCC | 1 cut(s) | 1919 |
| ApaLI | GTGCAC | 2 cut(s) | 1004, 1558 |
| ApeKI | GCWGC | 6 cut(s) | 507, 1172, 1221, 1370, 1953, 1970 |
| ApoI | RAATTY | 2 cut(s) | 107, 520 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1465 |
| AspS9I | GGNCC | 2 cut(s) | 965, 1100 |
| AsuHPI | GGTGA | 6 cut(s) | 382, 1043, 1104, 1660, 1918, 2063 |
| AvaII | GGWCC | 2 cut(s) | 965, 1100 |
| BaeGI | GKGCMC | 2 cut(s) | 1008, 1562 |
| BamHI | GGATCC | 1 cut(s) | 584 |
| BanII | GRGCYC | 1 cut(s) | 503 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 621, 653, 1113, 1145 |
| BauI | CACGAG | 2 cut(s) | 218, 1148 |
| BbrPI | CACGTG | 2 cut(s) | 78, 272 |
| BbsI | GAAGAC | 3 cut(s) | 293, 983, 1720 |
| Bbv12I | GWGCWC | 3 cut(s) | 503, 1008, 1562 |
| BbvI | GCAGC | 6 cut(s) | 519, 1184, 1233, 1357, 1957, 1965 |
| BccI | CCATC | 6 cut(s) | 817, 1022, 1346, 1391, 1586, 2042 |
| BceAI | ACGGC | 3 cut(s) | 617, 828, 1403 |
| BciT130I | CCWGG | 3 cut(s) | 148, 819, 1542 |
| BclI | TGATCA | 1 cut(s) | 795 |
| BcoDI | GTCTC | 7 cut(s) | 172, 202, 356, 701, 936, 1083, 1187 |
| BfaI | CTAG | 9 cut(s) | 357, 386, 485, 504, 692, 1433, 1568, 1779, 1974 |
| BfmI | CTRYAG | 4 cut(s) | 868, 985, 1089, 1371 |
| BfuAI | ACCTGC | 1 cut(s) | 976 |
| BglII | AGATCT | 1 cut(s) | 430 |
| BisI | GCNGC | 8 cut(s) | 508, 1173, 1222, 1371, 1922, 1954, 1962, 1971 |
| BlsI | GCNGC | 8 cut(s) | 509, 1174, 1223, 1372, 1923, 1955, 1963, 1972 |
| BmcAI | AGTACT | 1 cut(s) | 688 |
| Bme1390I | CCNGG | 3 cut(s) | 148, 819, 1542 |
| Bme18I | GGWCC | 2 cut(s) | 965, 1100 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 971 |
| BmgT120I | GGNCC | 2 cut(s) | 965, 1100 |
| BmiI | GGNNCC | 2 cut(s) | 9, 586 |
| BmrFI | CCNGG | 3 cut(s) | 148, 819, 1542 |
| BmrI | ACTGGG | 1 cut(s) | 1059 |
| BmuI | ACTGGG | 1 cut(s) | 1059 |
| BpiI | GAAGAC | 3 cut(s) | 293, 983, 1720 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 231, 263 |
| BpmI | CTGGAG | 1 cut(s) | 159 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1805 |
| BpuEI | CTTGAG | 2 cut(s) | 330, 803 |
| BsaAI | YACGTR | 2 cut(s) | 78, 272 |
| BsaI | GGTCTC | 1 cut(s) | 356 |
| BsaJI | CCNNGG | 4 cut(s) | 366, 818, 1770, 1894 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 199, 229 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 17, 1028, 1500, 1547 |
| Bse1I | ACTGG | 7 cut(s) | 429, 1065, 1184, 1201, 1337, 1992, 2004 |
| BseBI | CCWGG | 3 cut(s) | 148, 819, 1542 |
| BseDI | CCNNGG | 4 cut(s) | 366, 818, 1770, 1894 |
| BseGI | GGATG | 8 cut(s) | 389, 488, 828, 1149, 1250, 1333, 1357, 1402 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 17, 1028, 1500, 1547 |
| BseMII | CTCAG | 2 cut(s) | 579, 1767 |
| BseNI | ACTGG | 7 cut(s) | 429, 1065, 1184, 1201, 1337, 1992, 2004 |
| BseRI | GAGGAG | 3 cut(s) | 236, 788, 1841 |
| BseSI | GKGCMC | 2 cut(s) | 1008, 1562 |
| BseXI | GCAGC | 6 cut(s) | 519, 1184, 1233, 1357, 1957, 1965 |
| BseYI | CCCAGC | 1 cut(s) | 47 |
| BsgI | GTGCAG | 1 cut(s) | 1067 |
| BshFI | GGCC | 1 cut(s) | 1921 |
| BsiHKAI | GWGCWC | 3 cut(s) | 503, 1008, 1562 |
| BsiSI | CCGG | 1 cut(s) | 335 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 17, 1028, 1500, 1547 |
| BsmAI | GTCTC | 7 cut(s) | 172, 202, 356, 701, 936, 1083, 1187 |
| BsnI | GGCC | 1 cut(s) | 1921 |
| Bso31I | GGTCTC | 1 cut(s) | 356 |
| Bsp1286I | GDGCHC | 3 cut(s) | 503, 1008, 1562 |
| Bsp19I | CCATGG | 1 cut(s) | 1770 |
| BspACI | CCGC | 5 cut(s) | 94, 175, 184, 1922, 1962 |
| BspANI | GGCC | 1 cut(s) | 1921 |
| BspCNI | CTCAG | 2 cut(s) | 578, 1766 |
| BspLI | GGNNCC | 2 cut(s) | 9, 586 |
| BspMAI | CTGCAG | 2 cut(s) | 1093, 1375 |
| BspMI | ACCTGC | 1 cut(s) | 976 |
| BspPI | GGATC | 5 cut(s) | 260, 537, 579, 592, 627 |
| BspTNI | GGTCTC | 1 cut(s) | 356 |
| BsrI | ACTGG | 7 cut(s) | 429, 1065, 1184, 1201, 1337, 1992, 2004 |
| BssECI | CCNNGG | 4 cut(s) | 366, 818, 1770, 1894 |
| BssSI | CACGAG | 2 cut(s) | 218, 1148 |
| BssT1I | CCWWGG | 3 cut(s) | 366, 1770, 1894 |
| Bst2BI | CACGAG | 2 cut(s) | 218, 1148 |
| Bst2UI | CCWGG | 3 cut(s) | 148, 819, 1542 |
| Bst4CI | ACNGT | 7 cut(s) | 40, 672, 989, 1003, 1485, 1821, 1839 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1144, 1970 |
| BstBAI | YACGTR | 2 cut(s) | 78, 272 |
| BstC8I | GCNNGC | 1 cut(s) | 291 |
| BstDEI | CTNAG | 5 cut(s) | 565, 683, 1343, 1753, 1805 |
| BstDSI | CCRYGG | 1 cut(s) | 1770 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1498 |
| BstF5I | GGATG | 8 cut(s) | 389, 488, 828, 1149, 1250, 1333, 1357, 1402 |
| BstMAI | GTCTC | 7 cut(s) | 172, 202, 356, 701, 936, 1083, 1187 |
| BstNI | CCWGG | 3 cut(s) | 148, 819, 1542 |
| BstSCI | CCNGG | 3 cut(s) | 146, 817, 1540 |
| BstSFI | CTRYAG | 4 cut(s) | 868, 985, 1089, 1371 |
| BstSLI | GKGCMC | 2 cut(s) | 1008, 1562 |
| BstV1I | GCAGC | 6 cut(s) | 519, 1184, 1233, 1357, 1957, 1965 |
| BstV2I | GAAGAC | 3 cut(s) | 293, 983, 1720 |
| BstX2I | RGATCY | 4 cut(s) | 430, 542, 584, 619 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1270 |
| BstYI | RGATCY | 4 cut(s) | 430, 542, 584, 619 |
| BsuRI | GGCC | 1 cut(s) | 1921 |
| BtgI | CCRYGG | 1 cut(s) | 1770 |
| BtgZI | GCGATG | 1 cut(s) | 129 |
| BtsCI | GGATG | 8 cut(s) | 389, 488, 828, 1149, 1250, 1333, 1357, 1402 |
| BtsI | GCAGTG | 2 cut(s) | 1086, 1956 |
| BtsIMutI | CAGTG | 6 cut(s) | 999, 1072, 1086, 1177, 1224, 1956 |
| BveI | ACCTGC | 1 cut(s) | 976 |
| Cac8I | GCNNGC | 1 cut(s) | 291 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1081, 1454, 1970 |
| Cfr13I | GGNCC | 2 cut(s) | 965, 1100 |
| Csp6I | GTAC | 4 cut(s) | 638, 687, 1094, 1600 |
| CviQI | GTAC | 4 cut(s) | 638, 687, 1094, 1600 |
| DdeI | CTNAG | 5 cut(s) | 565, 683, 1343, 1753, 1805 |
| DraI | TTTAAA | 1 cut(s) | 849 |
| DriI | GACNNNNNGTC | 1 cut(s) | 971 |
| EaeI | YGGCCR | 1 cut(s) | 1919 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 971 |
| Ecl136II | GAGCTC | 1 cut(s) | 501 |
| Eco130I | CCWWGG | 3 cut(s) | 366, 1770, 1894 |
| Eco24I | GRGCYC | 1 cut(s) | 503 |
| Eco31I | GGTCTC | 1 cut(s) | 356 |
| Eco47I | GGWCC | 2 cut(s) | 965, 1100 |
| Eco53kI | GAGCTC | 1 cut(s) | 501 |
| Eco57I | CTGAAG | 3 cut(s) | 434, 1425, 1863 |
| Eco72I | CACGTG | 2 cut(s) | 78, 272 |
| EcoICRI | GAGCTC | 1 cut(s) | 501 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1498 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1100 |
| EcoRII | CCWGG | 3 cut(s) | 146, 817, 1540 |
| EcoT14I | CCWWGG | 3 cut(s) | 366, 1770, 1894 |
| EcoT38I | GRGCYC | 1 cut(s) | 503 |
| ErhI | CCWWGG | 3 cut(s) | 366, 1770, 1894 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 608, 640 |
| FbaI | TGATCA | 1 cut(s) | 795 |
| Fnu4HI | GCNGC | 8 cut(s) | 508, 1173, 1222, 1371, 1922, 1954, 1962, 1971 |
| FokI | GGATG | 8 cut(s) | 376, 475, 835, 1156, 1237, 1320, 1364, 1409 |
| FriOI | GRGCYC | 1 cut(s) | 503 |
| Fsp4HI | GCNGC | 8 cut(s) | 508, 1173, 1222, 1371, 1922, 1954, 1962, 1971 |
| FspBI | CTAG | 9 cut(s) | 357, 386, 485, 504, 692, 1433, 1568, 1779, 1974 |
| GluI | GCNGC | 8 cut(s) | 508, 1173, 1222, 1371, 1922, 1954, 1962, 1971 |
| GsaI | CCCAGC | 1 cut(s) | 51 |
| GsuI | CTGGAG | 1 cut(s) | 159 |
| HaeIII | GGCC | 1 cut(s) | 1921 |
| HapII | CCGG | 1 cut(s) | 335 |
| HincII | GTYRAC | 1 cut(s) | 1944 |
| HindII | GTYRAC | 1 cut(s) | 1944 |
| HindIII | AAGCTT | 2 cut(s) | 287, 1437 |
| HinfI | GANTC | 5 cut(s) | 52, 240, 709, 1232, 1673 |
| HpaII | CCGG | 1 cut(s) | 335 |
| HphI | GGTGA | 6 cut(s) | 382, 1043, 1104, 1660, 1918, 2063 |
| Hpy166II | GTNNAC | 4 cut(s) | 1006, 1538, 1560, 1944 |
| Hpy188III | TCNNGA | 6 cut(s) | 218, 393, 692, 995, 1103, 1589 |
| Hpy8I | GTNNAC | 4 cut(s) | 1006, 1538, 1560, 1944 |
| Hpy99I | CGWCG | 1 cut(s) | 1881 |
| HpyAV | CCTTC | 7 cut(s) | 21, 575, 610, 1387, 1395, 1507, 1971 |
| HpyCH4III | ACNGT | 7 cut(s) | 40, 672, 989, 1003, 1485, 1821, 1839 |
| HpyCH4IV | ACGT | 2 cut(s) | 77, 271 |
| HpyF3I | CTNAG | 5 cut(s) | 565, 683, 1343, 1753, 1805 |
| HpySE526I | ACGT | 2 cut(s) | 77, 271 |
| Ksp22I | TGATCA | 1 cut(s) | 795 |
| LmnI | GCTCC | 2 cut(s) | 498, 1828 |
| Lsp1109I | GCAGC | 6 cut(s) | 519, 1184, 1233, 1357, 1957, 1965 |
| MaeI | CTAG | 9 cut(s) | 357, 386, 485, 504, 692, 1433, 1568, 1779, 1974 |
| MaeII | ACGT | 2 cut(s) | 77, 271 |
| MaeIII | GTNAC | 5 cut(s) | 155, 215, 604, 829, 1756 |
| MfeI | CAATTG | 1 cut(s) | 1023 |
| MflI | RGATCY | 4 cut(s) | 430, 542, 584, 619 |
| MhlI | GDGCHC | 3 cut(s) | 503, 1008, 1562 |
| MlyI | GAGTC | 2 cut(s) | 249, 703 |
| MmeI | TCCRAC | 1 cut(s) | 919 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1465 |
| MseI | TTAA | 7 cut(s) | 152, 465, 551, 848, 926, 1749, 2010 |
| MslI | CAYNNNNRTG | 4 cut(s) | 493, 611, 1152, 1646 |
| MspA1I | CMGCKG | 1 cut(s) | 2020 |
| MspI | CCGG | 1 cut(s) | 335 |
| MspR9I | CCNGG | 3 cut(s) | 148, 819, 1542 |
| MunI | CAATTG | 1 cut(s) | 1023 |
| MvaI | CCWGG | 3 cut(s) | 148, 819, 1542 |
| NcoI | CCATGG | 1 cut(s) | 1770 |
| NlaIV | GGNNCC | 2 cut(s) | 9, 586 |
| NmuCI | GTSAC | 2 cut(s) | 215, 604 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1465 |
| PfeI | GAWTC | 3 cut(s) | 52, 1232, 1673 |
| PflFI | GACNNNGTC | 1 cut(s) | 213 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1028, 1547 |
| PkrI | GCNGC | 8 cut(s) | 509, 1174, 1223, 1372, 1923, 1955, 1963, 1972 |
| PleI | GAGTC | 2 cut(s) | 248, 703 |
| PmaCI | CACGTG | 2 cut(s) | 78, 272 |
| PmlI | CACGTG | 2 cut(s) | 78, 272 |
| PpsI | GAGTC | 2 cut(s) | 248, 703 |
| Ppu21I | YACGTR | 2 cut(s) | 78, 272 |
| PpuMI | RGGWCCY | 1 cut(s) | 1100 |
| PsiI | TTATAA | 2 cut(s) | 284, 1188 |
| Psp124BI | GAGCTC | 1 cut(s) | 503 |
| Psp5II | RGGWCCY | 1 cut(s) | 1100 |
| Psp6I | CCWGG | 3 cut(s) | 146, 817, 1540 |
| PspCI | CACGTG | 2 cut(s) | 78, 272 |
| PspFI | CCCAGC | 1 cut(s) | 47 |
| PspGI | CCWGG | 3 cut(s) | 146, 817, 1540 |
| PspN4I | GGNNCC | 2 cut(s) | 9, 586 |
| PspPI | GGNCC | 2 cut(s) | 965, 1100 |
| PspPPI | RGGWCCY | 1 cut(s) | 1100 |
| PstI | CTGCAG | 2 cut(s) | 1093, 1375 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1081, 1454, 1970 |
| PsuI | RGATCY | 4 cut(s) | 430, 542, 584, 619 |
| PsyI | GACNNNGTC | 1 cut(s) | 213 |
| PvuII | CAGCTG | 1 cut(s) | 2020 |
| RsaI | GTAC | 4 cut(s) | 639, 688, 1095, 1601 |
| RsaNI | GTAC | 4 cut(s) | 638, 687, 1094, 1600 |
| RseI | CAYNNNNRTG | 4 cut(s) | 493, 611, 1152, 1646 |
| SacI | GAGCTC | 1 cut(s) | 503 |
| SaqAI | TTAA | 7 cut(s) | 152, 465, 551, 848, 926, 1749, 2010 |
| SatI | GCNGC | 8 cut(s) | 508, 1173, 1222, 1371, 1922, 1954, 1962, 1971 |
| Sau96I | GGNCC | 2 cut(s) | 965, 1100 |
| ScaI | AGTACT | 1 cut(s) | 688 |
| SchI | GAGTC | 2 cut(s) | 249, 703 |
| ScrFI | CCNGG | 3 cut(s) | 148, 819, 1542 |
| SduI | GDGCHC | 3 cut(s) | 503, 1008, 1562 |
| SfcI | CTRYAG | 4 cut(s) | 868, 985, 1089, 1371 |
| SinI | GGWCC | 2 cut(s) | 965, 1100 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 493, 611, 1152, 1646 |
| SmlI | CTYRAG | 2 cut(s) | 345, 782 |
| SmoI | CTYRAG | 2 cut(s) | 345, 782 |
| SsiI | CCGC | 5 cut(s) | 94, 175, 184, 1922, 1962 |
| SspI | AATATT | 2 cut(s) | 1466, 1682 |
| SspMI | CTAG | 9 cut(s) | 357, 386, 485, 504, 692, 1433, 1568, 1779, 1974 |
| SstI | GAGCTC | 1 cut(s) | 503 |
| StyD4I | CCNGG | 3 cut(s) | 146, 817, 1540 |
| StyI | CCWWGG | 3 cut(s) | 366, 1770, 1894 |
| TaaI | ACNGT | 7 cut(s) | 40, 672, 989, 1003, 1485, 1821, 1839 |
| TaiI | ACGT | 2 cut(s) | 80, 274 |
| TaqI | TCGA | 3 cut(s) | 645, 1588, 1876 |
| TatI | WGTACW | 2 cut(s) | 686, 1093 |
| TauI | GCSGC | 2 cut(s) | 1924, 1964 |
| TfiI | GAWTC | 3 cut(s) | 52, 1232, 1673 |
| Tru1I | TTAA | 7 cut(s) | 152, 465, 551, 848, 926, 1749, 2010 |
| Tru9I | TTAA | 7 cut(s) | 152, 465, 551, 848, 926, 1749, 2010 |
| TscAI | CASTG | 6 cut(s) | 1006, 1072, 1093, 1184, 1231, 1963 |
| TseFI | GTSAC | 2 cut(s) | 215, 604 |
| TseI | GCWGC | 6 cut(s) | 507, 1172, 1221, 1370, 1953, 1970 |
| Tsp45I | GTSAC | 2 cut(s) | 215, 604 |
| TspGWI | ACGGA | 1 cut(s) | 2007 |
| TspRI | CASTG | 6 cut(s) | 1006, 1072, 1093, 1184, 1231, 1963 |
| Tth111I | GACNNNGTC | 1 cut(s) | 213 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1028, 1547 |
| VneI | GTGCAC | 2 cut(s) | 1004, 1558 |
| VpaK11BI | GGWCC | 2 cut(s) | 965, 1100 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1498 |
| XapI | RAATTY | 2 cut(s) | 107, 520 |
| XbaI | TCTAGA | 1 cut(s) | 691 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1465 |
| XspI | CTAG | 9 cut(s) | 357, 386, 485, 504, 692, 1433, 1568, 1779, 1974 |
| ZrmI | AGTACT | 1 cut(s) | 688 |