Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0010595

Physical Location & Seq

Genomic Coordinates Forward (+)

67641919 .. 67647783

Gene Structure 5865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G040330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2559 bp

ATGCCCTCTGCCTCATGCCAAACCTCAACCTCCGCAATGTTCGTCCACAACTTCCACCGTCTCAGCCTCCGCAACTCCCCCAAATTCCGATGCGTCTTGGACCAGATTGCCCCCAACCTGGCCGTCTCCTCCTCCCTCAGCTCCGTCTTCACCTCTGCCAACCTCGTCGCCGCCGCCGCCGCCTCCGGCTCCGGCTCTCTCCACAGCGCCGTCACCTCCACCATCACTCAAGTCGCTGTCACCGCCGTCGCCATCGCCTCCGGGGCTTGTCTCTCCACTAAAGTTGATTTCTTGTGGCCCAAACTCGAAACGCCGCCAGGCTGTGATATAGTGGAGGGAGTAGACGTGACTGGATATCCTATATTCAGTGATCCAAAGGTGCAAAAAGCTATTGCATTTGCCAAGAAGGCTCACCATGGCCAGCTACGCAAGACCGGAGACCCTTATTTAGTCCATTGCATCCATACGGGAAGAATCTTGGCCATGTTGGTTCCTTCAAGTGGCGAACGAGCTGTTCAGACGGTTGTTGCTGGGATTCTCCACGATGTCGTTGATGACACGTGCGAAAGTTTCAACCGCATAGAACAAGAATTTGGCGATGATGTAGCCAAGCTCGTAGCTGGAGTTTCCAGGTTAAGTTACATAAACCAGCTTTTGCGGAGACACCGCAGGATAAATGTGAATGACGGGAGACTTGGTCACGAGGAGGCAAATAACTTACGAGTCATGCTCTTGGGCATGGTTGATGATCCACGTGTAGTGCTTATAAAGCTTGCAGATCGTCTTCACAATATGAGAACAATTTACGCTCTGCCTCCGGCAAAAGCTCAAGCTGTTGCTAGGGAGACCTTGGTGATTTGGTGTTCTCTAGCATCCAGATTGGGTTTGTGGGCTATGAAAGCTGAACTGGAAGATCTGTGCTTTGCTGTTCTTCAGCCTCAAATGTTTAAGAACATGAGAGCTGATCTAGCATCCATGTGGAGCTCTAGCAGCAAAGTAGGAAATTTGAAAAGAATATCTGCAAGATCCACCTTAAATGGAGTAAGCTCAGTTTCAGACAATGAAGGATCCATGAATGATGAAGATGTCACAACCATGAAGGATCTCTTGGAAGCCGTAGTACCTTTCGATGTATTGTTAGATCGGAGAAAACGGTCTAATTTTCTAAGTACTCTAGAACAAGATTTGGAGACTCATAAAAGACCAAAGGTTGTGCATGATGCTGGAATTGCTTTAGCATCTCTGGTAATTTGTGAGGAGGCACTTGAGCAGGAGTTGATCATATCAACTTCTTATGTTCCAGGGATGGAAGTAACTTTATCCAGCCGTTTAAAAAGTTTGTATAGCATCTACAGCAAGATGAAACGAAAAGATGTCAGCATCAATAAAGTTTATGATGCCCGTGCATTAAGGGTAGTTGTTGGAGACAAGAATGGAACTTTGCATGGACCTGCTGTCCAATGTTGCTACAGTCTTCTTGGCACTGTGCACAAGCATTGGACACCAATTGATGGTGAGTTTGATGATTACATTGTCAATCCAAAGCCTAGTGGCTATCAGTCTCTGCACACTGCAGTACAAGGTCCTGACAAATCACCTTTGGAAGTTCAAATACGAACGCAGAGGATGCACGAGTATGCAGAACATGGACTTGCAGCACACTGGCTTTATAAAGAGACTGGAAACAAGCTGTCTGACAGAAGCAGCACTGATGAATCTGAAATAGATGCAACATCCTTTATCTCCAAAACTATGGATGACCAAAATGATAGAGAAATTGATTTCTTTGAGAAGTATAGTATGTTGAAAATTGGGCATCCAGTTCTTAGAGTGGATGGAAGTCATCTTCTTGCTGCAGTTGTCATTAGGGTAGAGAAGGATGGAAGGGAATTACTCGTTGCCGTGAGCTTTGCACTAGAAGCTTCAGAAGCAGTCGCTGATAGAAAATATTCTTTTCAAAAACAACGGTGGGAAGCCTATGCAAGGTTATATAAGAAGGTTTCTGATGAATGGTGGTGTGAACCAGGACATGGGGATTGGTGCACCTGCCTAGAGAAATATACACTTTGTCGAGATGGTATGTACCACAAGGAAGATCAGTTTGGGAGATTACTGCCGACATTCATTCAGGTGATTGATTTGACAGATGAAGAAGAATCTGAATATTGGGCTGTTGTTTCTGCTATCTTTGAGGGAAGACAGCTTGATTACATTACACCTACGCCAAGATTTAACTCAGTTACATCAACTTCCATGGAAACTAGCATCAATAACAAGGTGCATTTGCTAAGGACAATGCTACGGTGGGAAGAGCAATTACGGTCTGAAGCAATTTATGGAAATGGACAAGCCATGTATCGACGGGGTTCTGTTGTCCTTGGGGAAGTGGTGATTATATGTTGGCCGCATGGCGAAATAATGAGGTTGACAACAGGCAGCACCGCCGCAGATGCTGCTAGAAGGAAAGGACTAGATGGAAAACTGGTTTTGGTTAATGGTCAGCTGGTGTTGCCCAACACAAAGCTCACAGATGGTGATGTGGTTGAAGTCAGAGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008728 GO:0008893 GO:0009116 GO:0009117 GO:0009119 GO:0009150 GO:0009259 GO:0009605 GO:0009987 GO:0009991 GO:0015969 GO:0016020 GO:0016740 GO:0016772 GO:0016778 GO:0016787 GO:0016788 GO:0016794 GO:0019637 GO:0019693 GO:0030312 GO:0031667 GO:0033865 GO:0033875 GO:0034032 GO:0034035 GO:0034641 GO:0042278 GO:0042578 GO:0042594 GO:0044237 GO:0044238 GO:0044281 GO:0044464 GO:0046128 GO:0046483 GO:0050896 GO:0055086 GO:0071704 GO:0071944 GO:0072521 GO:1901068 GO:1901135 GO:1901360 GO:1901564 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00230 map00230

Pfam Domains

Protein Families

HD_4 RelA_SpoT TGS

Protein Analysis

852

Amino Acids

94.69

Weight (kDa)

6.45

Isoelectric Point (pI)

34.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HD_4	PF13328	130 - 297	7.3e-44	HD domain
HD	PF01966	150 - 265	4.4e-09	HD domain
RelA_SpoT	PF04607	442 - 561	7.5e-36	Region found in RelA / SpoT proteins
DUF7589	PF24500	598 - 732	4.3e-75	Domain of unknown function (DUF7589)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010595)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g33820 FvH4_7g33820
malus_domestica	MD07G1306500.v1.1
prunus_persica	Prupe.2G324500_v2.0.a1 Prupe.2G324500_v2.0.a1 Prupe.2G324500_v2.0.a1 Prupe.2G324500_v2.0.a1 Prupe.2G324500_v2.0.a1
pyrus_communis	pycom07g27950
rosa_chinensis	RchiOBHm_Chr1g0383931
rosa_laevigata	RLG00000026085
rosa_multiflora	Rmu_sc0005139.1_g000026
rosa_roxburghii	Rroxscaffold_4G00277130
rosa_rugosa	Rorug01G0443100 Rorug01G0443200 Rorug01G0443400.1 Rorug01G0443500.1
rosa_samantha	Rh1AG469100 Rh1CG439600 Rh1DG459600
rosa_wichuraiana	Rw1G040330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	767, 1671
AarI	CACCTGC	1 cut(s)	2054
Acc36I	ACCTGC	2 cut(s)	1459, 2054
AccB7I	CCANNNNNTGG	2 cut(s)	1511, 2030
AccI	GTMKAC	1 cut(s)	342
AclWI	GGATC	6 cut(s)	365, 743, 1020, 1062, 1075, 1110
AcoI	YGGCCR	4 cut(s)	120, 418, 480, 2402
AcsI	RAATTY	3 cut(s)	83, 590, 1003
AcuI	CTGAAG	3 cut(s)	917, 1908, 2346
AcvI	CACGTG	2 cut(s)	561, 755
AfaI	GTAC	4 cut(s)	1122, 1171, 1578, 2084
AfiI	CCNNNNNNNGG	5 cut(s)	118, 500, 1511, 1983, 2030
AflIII	ACRYGT	2 cut(s)	558, 754
AgsI	TTSAA	7 cut(s)	498, 574, 1009, 1610, 1807, 1958, 2546
AhdI	GACNNNNNGTC	1 cut(s)	1454
AjiI	CACGTC	1 cut(s)	346
AjnI	CCWGG	5 cut(s)	117, 316, 629, 1300, 2023
AjuI	GAANNNNNNNTTGG	6 cut(s)	576, 608, 1091, 1123, 2085, 2117
Alw21I	GWGCWC	3 cut(s)	986, 1491, 2045
Alw44I	GTGCAC	2 cut(s)	1487, 2041
AlwI	GGATC	6 cut(s)	365, 743, 1020, 1062, 1075, 1110
AlwNI	CAGNNNCTG	3 cut(s)	1564, 1937, 2453
AoxI	GGCC	5 cut(s)	120, 296, 418, 480, 2402
ApaLI	GTGCAC	2 cut(s)	1487, 2041
ApeKI	GCWGC	6 cut(s)	990, 1655, 1704, 1853, 2436, 2453
ApoI	RAATTY	3 cut(s)	83, 590, 1003
Asp700I	GAANNNNTTC	1 cut(s)	1948
AspLEI	GCGC	1 cut(s)	209
AspS9I	GGNCC	4 cut(s)	100, 297, 1448, 1583
AsuC2I	CCSGG	1 cut(s)	262
AvaII	GGWCC	3 cut(s)	100, 1448, 1583
BaeGI	GKGCMC	2 cut(s)	1491, 2045
BalI	TGGCCA	2 cut(s)	420, 482
BamHI	GGATCC	1 cut(s)	1067
BanII	GRGCYC	1 cut(s)	986
BarI	GAAGNNNNNNTAC	6 cut(s)	1104, 1136, 1596, 1628, 2301, 2333
BauI	CACGAG	2 cut(s)	701, 1631
BbrPI	CACGTG	2 cut(s)	561, 755
BbsI	GAAGAC	4 cut(s)	139, 776, 1466, 2203
Bbv12I	GWGCWC	3 cut(s)	986, 1491, 2045
BbvCI	CCTCAGC	1 cut(s)	137
BbvI	GCAGC	6 cut(s)	1002, 1667, 1716, 1840, 2440, 2448
BccI	CCATC	9 cut(s)	230, 260, 1300, 1505, 1829, 1874, 2069, 2468, 2525
BceAI	ACGGC	6 cut(s)	107, 194, 230, 1100, 1311, 1886
BciT130I	CCWGG	5 cut(s)	119, 318, 631, 1302, 2025
BclI	TGATCA	1 cut(s)	1278
BcnI	CCSGG	1 cut(s)	262
BfmI	CTRYAG	4 cut(s)	1351, 1468, 1572, 1854
BfoI	RGCGCY	1 cut(s)	210
BfuAI	ACCTGC	2 cut(s)	1459, 2054
BglI	GCCNNNNNGGC	2 cut(s)	263, 407
BglII	AGATCT	1 cut(s)	913
BmcAI	AGTACT	1 cut(s)	1171
Bme1390I	CCNGG	6 cut(s)	119, 262, 318, 631, 1302, 2025
Bme18I	GGWCC	3 cut(s)	100, 1448, 1583
BmeRI	GACNNNNNGTC	1 cut(s)	1454
BmgBI	CACGTC	1 cut(s)	346
BmgT120I	GGNCC	4 cut(s)	100, 297, 1448, 1583
BmiI	GGNNCC	3 cut(s)	190, 492, 1069
BmrFI	CCNGG	6 cut(s)	119, 262, 318, 631, 1302, 2025
BpiI	GAAGAC	4 cut(s)	139, 776, 1466, 2203
BplI	GAGNNNNNCTC	2 cut(s)	714, 746
BpmI	CTGGAG	1 cut(s)	642
Bpu10I	CCTNAGC	2 cut(s)	137, 2288
BpuEI	CTTGAG	3 cut(s)	213, 813, 1286
BpuMI	CCSGG	1 cut(s)	262
BsaAI	YACGTR	2 cut(s)	561, 755
BsaI	GGTCTC	2 cut(s)	432, 839
BsaJI	CCNNGG	6 cut(s)	261, 415, 849, 1301, 2253, 2377
BsaWI	WCCGGW	1 cut(s)	434
BsaXI	ACNNNNNCTCC	4 cut(s)	330, 360, 682, 712
Bsc4I	CCNNNNNNNGG	5 cut(s)	118, 500, 1511, 1983, 2030
Bse1I	ACTGG	6 cut(s)	355, 912, 1667, 1684, 1820, 2487
Bse3DI	GCAATG	2 cut(s)	42, 454
BseBI	CCWGG	5 cut(s)	119, 318, 631, 1302, 2025
BseDI	CCNNGG	6 cut(s)	261, 415, 849, 1301, 2253, 2377
BseLI	CCNNNNNNNGG	5 cut(s)	118, 500, 1511, 1983, 2030
BseMI	GCAATG	2 cut(s)	42, 454
BseMII	CTCAG	4 cut(s)	76, 151, 1062, 2250
BseNI	ACTGG	6 cut(s)	355, 912, 1667, 1684, 1820, 2487
BseRI	GAGGAG	4 cut(s)	118, 121, 719, 1271
BseSI	GKGCMC	2 cut(s)	1491, 2045
BseXI	GCAGC	6 cut(s)	1002, 1667, 1716, 1840, 2440, 2448
BseYI	CCCAGC	1 cut(s)	530
BsgI	GTGCAG	1 cut(s)	1550
BshFI	GGCC	5 cut(s)	122, 298, 420, 482, 2404
BsiHKAI	GWGCWC	3 cut(s)	986, 1491, 2045
BsiSI	CCGG	5 cut(s)	186, 192, 261, 435, 818
BslI	CCNNNNNNNGG	5 cut(s)	118, 500, 1511, 1983, 2030
BsmBI	CGTCTC	2 cut(s)	65, 130
BsnI	GGCC	5 cut(s)	122, 298, 420, 482, 2404
Bso31I	GGTCTC	2 cut(s)	432, 839
Bsp1286I	GDGCHC	3 cut(s)	986, 1491, 2045
Bsp19I	CCATGG	2 cut(s)	415, 2253
BspANI	GGCC	5 cut(s)	122, 298, 420, 482, 2404
BspCNI	CTCAG	4 cut(s)	75, 150, 1061, 2249
BspLI	GGNNCC	3 cut(s)	190, 492, 1069
BspMAI	CTGCAG	2 cut(s)	1576, 1858
BspMI	ACCTGC	2 cut(s)	1459, 2054
BspPI	GGATC	6 cut(s)	365, 743, 1020, 1062, 1075, 1110
BspQI	GCTCTTC	1 cut(s)	2304
BspTNI	GGTCTC	2 cut(s)	432, 839
BsrDI	GCAATG	2 cut(s)	42, 454
BsrI	ACTGG	6 cut(s)	355, 912, 1667, 1684, 1820, 2487
BssECI	CCNNGG	6 cut(s)	261, 415, 849, 1301, 2253, 2377
BssSI	CACGAG	2 cut(s)	701, 1631
BssT1I	CCWWGG	4 cut(s)	415, 849, 2253, 2377
Bst2BI	CACGAG	2 cut(s)	701, 1631
Bst2UI	CCWGG	5 cut(s)	119, 318, 631, 1302, 2025
Bst4CI	ACNGT	8 cut(s)	59, 523, 1155, 1472, 1486, 1968, 2304, 2322
Bst6I	CTCTTC	1 cut(s)	2304
BstAPI	GCANNNNNTGC	2 cut(s)	1627, 2453
BstBAI	YACGTR	2 cut(s)	561, 755
BstC8I	GCNNGC	2 cut(s)	422, 774
BstDEI	CTNAG	7 cut(s)	62, 137, 1048, 1166, 1826, 2236, 2288
BstDSI	CCRYGG	2 cut(s)	415, 2253
BstENI	CCTNNNNNAGG	1 cut(s)	1981
BstH2I	RGCGCY	1 cut(s)	210
BstHHI	GCGC	1 cut(s)	209
BstNI	CCWGG	5 cut(s)	119, 318, 631, 1302, 2025
BstSCI	CCNGG	6 cut(s)	117, 260, 316, 629, 1300, 2023
BstSFI	CTRYAG	4 cut(s)	1351, 1468, 1572, 1854
BstSLI	GKGCMC	2 cut(s)	1491, 2045
BstV1I	GCAGC	6 cut(s)	1002, 1667, 1716, 1840, 2440, 2448
BstV2I	GAAGAC	4 cut(s)	139, 776, 1466, 2203
BstX2I	RGATCY	4 cut(s)	913, 1025, 1067, 1102
BstXI	CCANNNNNNTGG	1 cut(s)	1753
BstYI	RGATCY	4 cut(s)	913, 1025, 1067, 1102
BsuRI	GGCC	5 cut(s)	122, 298, 420, 482, 2404
BtgI	CCRYGG	2 cut(s)	415, 2253
BtgZI	GCGATG	2 cut(s)	238, 612
BtrI	CACGTC	1 cut(s)	346
BtsI	GCAGTG	1 cut(s)	1569
BtsIMutI	CAGTG	5 cut(s)	373, 1482, 1569, 1660, 1707
BveI	ACCTGC	2 cut(s)	1459, 2054
Cac8I	GCNNGC	2 cut(s)	422, 774
CaiI	CAGNNNCTG	3 cut(s)	1564, 1937, 2453
CfoI	GCGC	1 cut(s)	209
Cfr13I	GGNCC	4 cut(s)	100, 297, 1448, 1583
CseI	GACGC	1 cut(s)	82
Csp6I	GTAC	4 cut(s)	1121, 1170, 1577, 2083
CspCI	CAANNNNNGTGG	2 cut(s)	265, 300
CviQI	GTAC	4 cut(s)	1121, 1170, 1577, 2083
DdeI	CTNAG	7 cut(s)	62, 137, 1048, 1166, 1826, 2236, 2288
DraI	TTTAAA	1 cut(s)	1332
DriI	GACNNNNNGTC	1 cut(s)	1454
EaeI	YGGCCR	4 cut(s)	120, 418, 480, 2402
Eam1104I	CTCTTC	1 cut(s)	2304
Eam1105I	GACNNNNNGTC	1 cut(s)	1454
EarI	CTCTTC	1 cut(s)	2304
Ecl136II	GAGCTC	1 cut(s)	984
Eco130I	CCWWGG	4 cut(s)	415, 849, 2253, 2377
Eco24I	GRGCYC	1 cut(s)	986
Eco31I	GGTCTC	2 cut(s)	432, 839
Eco32I	GATATC	1 cut(s)	356
Eco47I	GGWCC	3 cut(s)	100, 1448, 1583
Eco53kI	GAGCTC	1 cut(s)	984
Eco57I	CTGAAG	3 cut(s)	917, 1908, 2346
Eco72I	CACGTG	2 cut(s)	561, 755
EcoICRI	GAGCTC	1 cut(s)	984
EcoNI	CCTNNNNNAGG	1 cut(s)	1981
EcoO109I	RGGNCCY	1 cut(s)	1583
EcoRII	CCWGG	5 cut(s)	117, 316, 629, 1300, 2023
EcoRV	GATATC	1 cut(s)	356
EcoT14I	CCWWGG	4 cut(s)	415, 849, 2253, 2377
EcoT38I	GRGCYC	1 cut(s)	986
ErhI	CCWWGG	4 cut(s)	415, 849, 2253, 2377
Esp3I	CGTCTC	2 cut(s)	65, 130
FalI	AAGNNNNNCTT	2 cut(s)	1091, 1123
FbaI	TGATCA	1 cut(s)	1278
FblI	GTMKAC	1 cut(s)	342
FriOI	GRGCYC	1 cut(s)	986
GlaI	GCGC	1 cut(s)	208
GsaI	CCCAGC	1 cut(s)	534
GsuI	CTGGAG	1 cut(s)	642
HaeII	RGCGCY	1 cut(s)	210
HaeIII	GGCC	5 cut(s)	122, 298, 420, 482, 2404
HapII	CCGG	5 cut(s)	186, 192, 261, 435, 818
HgaI	GACGC	1 cut(s)	82
HhaI	GCGC	1 cut(s)	209
Hin6I	GCGC	1 cut(s)	207
HinP1I	GCGC	1 cut(s)	207
HincII	GTYRAC	1 cut(s)	2427
HindII	GTYRAC	1 cut(s)	2427
HindIII	AAGCTT	2 cut(s)	770, 1920
HinfI	GANTC	6 cut(s)	474, 535, 723, 1192, 1715, 2156
HpaII	CCGG	5 cut(s)	186, 192, 261, 435, 818
Hpy166II	GTNNAC	6 cut(s)	46, 343, 1489, 2021, 2043, 2427
Hpy188III	TCNNGA	5 cut(s)	701, 876, 1175, 1586, 2072
Hpy8I	GTNNAC	6 cut(s)	46, 343, 1489, 2021, 2043, 2427
Hpy99I	CGWCG	3 cut(s)	170, 251, 2364
HpyAV	CCTTC	8 cut(s)	400, 504, 1058, 1093, 1870, 1878, 1990, 2454
HpyCH4III	ACNGT	8 cut(s)	59, 523, 1155, 1472, 1486, 1968, 2304, 2322
HpyCH4IV	ACGT	3 cut(s)	345, 560, 754
HpyF3I	CTNAG	7 cut(s)	62, 137, 1048, 1166, 1826, 2236, 2288
HpySE526I	ACGT	3 cut(s)	345, 560, 754
HspAI	GCGC	1 cut(s)	207
Ksp22I	TGATCA	1 cut(s)	1278
LguI	GCTCTTC	1 cut(s)	2304
LmnI	GCTCC	3 cut(s)	146, 194, 981
Lsp1109I	GCAGC	6 cut(s)	1002, 1667, 1716, 1840, 2440, 2448
MaeII	ACGT	3 cut(s)	345, 560, 754
MaeIII	GTNAC	8 cut(s)	211, 238, 346, 638, 698, 1087, 1312, 2239
MfeI	CAATTG	1 cut(s)	1506
MflI	RGATCY	4 cut(s)	913, 1025, 1067, 1102
MhlI	GDGCHC	3 cut(s)	986, 1491, 2045
MlsI	TGGCCA	2 cut(s)	420, 482
MluNI	TGGCCA	2 cut(s)	420, 482
MlyI	GAGTC	2 cut(s)	732, 1186
MmeI	TCCRAC	1 cut(s)	1402
Mox20I	TGGCCA	2 cut(s)	420, 482
MroXI	GAANNNNTTC	1 cut(s)	1948
MscI	TGGCCA	2 cut(s)	420, 482
MseI	TTAA	7 cut(s)	635, 948, 1034, 1331, 1409, 2232, 2493
MslI	CAYNNNNRTG	4 cut(s)	976, 1094, 1635, 2129
Msp20I	TGGCCA	2 cut(s)	420, 482
MspA1I	CMGCKG	1 cut(s)	2503
MspI	CCGG	5 cut(s)	186, 192, 261, 435, 818
MspR9I	CCNGG	6 cut(s)	119, 262, 318, 631, 1302, 2025
MunI	CAATTG	1 cut(s)	1506
MvaI	CCWGG	5 cut(s)	119, 318, 631, 1302, 2025
NciI	CCSGG	1 cut(s)	262
NcoI	CCATGG	2 cut(s)	415, 2253
NlaIV	GGNNCC	3 cut(s)	190, 492, 1069
NmuCI	GTSAC	5 cut(s)	211, 238, 346, 698, 1087
PaqCI	CACCTGC	1 cut(s)	2054
PciSI	GCTCTTC	1 cut(s)	2304
PdmI	GAANNNNTTC	1 cut(s)	1948
PfeI	GAWTC	4 cut(s)	474, 535, 1715, 2156
PflFI	GACNNNGTC	1 cut(s)	696
PflMI	CCANNNNNTGG	2 cut(s)	1511, 2030
PleI	GAGTC	2 cut(s)	731, 1186
PmaCI	CACGTG	2 cut(s)	561, 755
PmlI	CACGTG	2 cut(s)	561, 755
PpsI	GAGTC	2 cut(s)	731, 1186
Ppu21I	YACGTR	2 cut(s)	561, 755
PpuMI	RGGWCCY	1 cut(s)	1583
PsiI	TTATAA	2 cut(s)	767, 1671
Psp124BI	GAGCTC	1 cut(s)	986
Psp5II	RGGWCCY	1 cut(s)	1583
Psp6I	CCWGG	5 cut(s)	117, 316, 629, 1300, 2023
PspCI	CACGTG	2 cut(s)	561, 755
PspFI	CCCAGC	1 cut(s)	530
PspGI	CCWGG	5 cut(s)	117, 316, 629, 1300, 2023
PspN4I	GGNNCC	3 cut(s)	190, 492, 1069
PspPI	GGNCC	4 cut(s)	100, 297, 1448, 1583
PspPPI	RGGWCCY	1 cut(s)	1583
PstI	CTGCAG	2 cut(s)	1576, 1858
PstNI	CAGNNNCTG	3 cut(s)	1564, 1937, 2453
PsuI	RGATCY	4 cut(s)	913, 1025, 1067, 1102
PsyI	GACNNNGTC	1 cut(s)	696
PvuII	CAGCTG	1 cut(s)	2503
RsaI	GTAC	4 cut(s)	1122, 1171, 1578, 2084
RsaNI	GTAC	4 cut(s)	1121, 1170, 1577, 2083
RseI	CAYNNNNRTG	4 cut(s)	976, 1094, 1635, 2129
SacI	GAGCTC	1 cut(s)	986
SapI	GCTCTTC	1 cut(s)	2304
SaqAI	TTAA	7 cut(s)	635, 948, 1034, 1331, 1409, 2232, 2493
Sau96I	GGNCC	4 cut(s)	100, 297, 1448, 1583
ScaI	AGTACT	1 cut(s)	1171
SchI	GAGTC	2 cut(s)	732, 1186
ScrFI	CCNGG	6 cut(s)	119, 262, 318, 631, 1302, 2025
SduI	GDGCHC	3 cut(s)	986, 1491, 2045
SfcI	CTRYAG	4 cut(s)	1351, 1468, 1572, 1854
SinI	GGWCC	3 cut(s)	100, 1448, 1583
SmiMI	CAYNNNNRTG	4 cut(s)	976, 1094, 1635, 2129
SmlI	CTYRAG	3 cut(s)	228, 828, 1265
SmoI	CTYRAG	3 cut(s)	228, 828, 1265
SspI	AATATT	2 cut(s)	1949, 2165
SstI	GAGCTC	1 cut(s)	986
StyD4I	CCNGG	6 cut(s)	117, 260, 316, 629, 1300, 2023
StyI	CCWWGG	4 cut(s)	415, 849, 2253, 2377
TaaI	ACNGT	8 cut(s)	59, 523, 1155, 1472, 1486, 1968, 2304, 2322
TaiI	ACGT	3 cut(s)	348, 563, 757
TaqI	TCGA	4 cut(s)	306, 1128, 2071, 2359
TatI	WGTACW	2 cut(s)	1169, 1576
TauI	GCSGC	7 cut(s)	173, 176, 179, 182, 316, 2407, 2447
TfiI	GAWTC	4 cut(s)	474, 535, 1715, 2156
Tru1I	TTAA	7 cut(s)	635, 948, 1034, 1331, 1409, 2232, 2493
Tru9I	TTAA	7 cut(s)	635, 948, 1034, 1331, 1409, 2232, 2493
TscAI	CASTG	5 cut(s)	373, 1489, 1576, 1667, 1714
TseFI	GTSAC	5 cut(s)	211, 238, 346, 698, 1087
TseI	GCWGC	6 cut(s)	990, 1655, 1704, 1853, 2436, 2453
Tsp45I	GTSAC	5 cut(s)	211, 238, 346, 698, 1087
TspGWI	ACGGA	1 cut(s)	133
TspRI	CASTG	5 cut(s)	373, 1489, 1576, 1667, 1714
Tth111I	GACNNNGTC	1 cut(s)	696
Van91I	CCANNNNNTGG	2 cut(s)	1511, 2030
VneI	GTGCAC	2 cut(s)	1487, 2041
VpaK11BI	GGWCC	3 cut(s)	100, 1448, 1583
XagI	CCTNNNNNAGG	1 cut(s)	1981
XapI	RAATTY	3 cut(s)	83, 590, 1003
XbaI	TCTAGA	1 cut(s)	1174
XmiI	GTMKAC	1 cut(s)	342
XmnI	GAANNNNTTC	1 cut(s)	1948
ZrmI	AGTACT	1 cut(s)	1171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.