Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0010595

Physical Location & Seq

Genomic Coordinates Forward (+)

54017954 .. 54025289

Gene Structure 7336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0443100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2799 bp

ATGAATGCTGCAGAGTTCCTATGGGAAACCACCGGAACATCCCAATTATACCCTCATGTTCTTCCCAAAACGCCCCCAAAGAGACTCGAAATCCCACTCAACTGCACTGACTACCACCTCACCCGAAACTGTCCCTCAAACTACCCCACCACCTCTTCCCCAGACCAAGATCCTGACCGTCCATCTCCTCCCACGTGTCCGGAGTACTTCCGCTGGATACACGAGGACCTGAGGCCATGGGCCCACACGGGGATCACAAGGGACACGTTGCAGAAGGCGAATCGTACGGCCGATTTTAAGCTGGTGATTGTAAACGGCAAGGCGTACATGGAGAGATACAGCAAGGCGTTTCAGAGCAGAGACACTTTTACGCTGTGGGGGATCCTACAGTTGCTGCGTAAGTACCCAGGGAAAGTGCCTGACTTGGAGCTCATGTTCGACTGCGTTGACTGGCCGGTGATTCCGTCAAAGAACTTTAGCGAGCCCAATTCTACAGCCCCGCCACCATTGTTTCGTTACTGTGGGGATAACAGCACACTCGATATAGTCTTCCCTGATTGGTCCTTTTGGGGATGGCCCGAAACTAATATAGCTCCATGGGAGAACTTGTTGAAGCAGCTAGAGGAAGGTAACAAGAGGAGCAGATGGGTAGACAGACAGCCTTATGCTTATTGGAAGGGGAATCCGGAGGTCGCAGAAACAAGGCAAGACCTCCTAAAGTGTAATGTTTCCGAGGAACAGGATTGGCATGCTCGCGTTTATGCTCAGAATTGGACCCGAGAAGAAAAGGAAGGGTTCAAGAAATCGGATTTGGCAAGCCAATGCATTCATAGGTATAAGATCTATATAGAAGGATCTGCGTGGTCTGTGAGTGACAAGTACATTCTTGCTTGTGATTCTGTCACCTTAATAGTAAAGCCCCGATACTACGACTTCTTCACGAGAGGTTTGATGCCGGTGCACCACTACTGGCCCATCAAGGATGATGACAAGTGCAGGTCTATTAAGTATGCTGTAGATTGGGGAAACAGCCACAAGCAAAAGGAAAGTGCACAAGCCATTGGAAAGGCAGCAAGTAACCTAATTCAAGAGGATTTGAAGATGGACTATGTGTATGACTACATGTTTCATCTTTTAAGAGAATACGCAAAGCTCTTGCAATTCAAGCCCACCATACCTCGAGAAGCTATAGAACTCTGCCCAGAGGCAATGGCGTGCCTAGCACAAGGACTAGAGAAGCAATATATGATGGAATCCATGGTGAAGGGTCCTGCAATCACTAGCCCATGTACCATGCCTCCTCCATATGACCCTCAATCTCTCTTTTCAGTACTTAGGAGACAATCAAATACAATTAAACGGCAGACACAGACTCAAGTCGGTACCTCGGCCCAAGATTCAATACTAACGACCAGAGCATCCCAATTATACCCTCAGCGTACCCCTGTGCTTCCCGAAAAGCCCCCAGAGATACTCGAAATCCCACTCAACTGCACTGCGTTCGACCTCACCCGAACCTGCCCCTCAAGCTACCCCACCACCACCTCTTCCCCGGACCAAGTTCCTGACCGTCCGTCCCCACCCACGTGTCCTGACCACTTCCGTTGGATACACGAGGACCTGAGGCCATGGGCCCACACGGGGATCACAAGGGACACGTTGCAGAAGTCTAGGCGGACGGCCAGTTTTAAGCTGGTGATTGTAAACGGCAAGGCGTATTTGGAGACATACGTCAAGTCGTTTCAGAGCAGAGACACTTTTACGCTGTGGGGGATCCTACAGTTGCTGCGTAGGTACCCAGGGAAAGTGCCTGATTTGGAGCTCATGTTTGACTGCGTTGACTGGCCGGTGATTCTGTCAAGGTTCTATAGCGGGCCCAATTCTTCTGCCCCGCCACCATTGTTTCGTTACTGTGGGGATGACCGCTCACTCGATATAGTCTTCCCTGATTGGTCCTTTTGGGGATGGCCTGAAATTAATATAGCTCCATGGGGGAACTTGTTGAAGCAGCTAGAGGAAGGTAACAAGAGGAGCAGATGGGTAGACAGACAGCCTTATGCTTACTGGAAAGGGAATCCGGCTGTAGCGGCAACAAGGCAAGACCTCCTCAAATGTAATGTTTCCGAGGAACAGGATTGGAATGCTCGCGTTTATGCTCAGGATTGGTCTCGAGAAGTAAAGGATGGGTTCAAGCAATCGGATTTGGCAAGCCAATGCGTTCATAGGTATAAGATCTATATAGAAGGGTCTGCTTGGTCTGTGAGTAACAAGTACATTCTTGCTTGTGATTCCGTTACCTTGATAGTAAAGCCCCGATACTATGACTTCTTCACGAGAGGTTTGATGCCAGTGCACCACTACTGGCCCATCAAGGATAATGACAAGTGCAGGTCTATTAAGTATGCTGTAGATTGGGGAAACAACCACAAGCAAAAGGCACAAGCCATTGGAAAGGCAGCAAGTAACCTAATTCAAGAGGATTTGAAGATGGACTATGTGTATGACTACATGTTTCATCTTTTAAGCGAATACGCAAAGCTCTTGCAATTCAAGCCGACCATACCTCCGAAAGCTATCGAACTCTGCTCAGAGGCAATGGCGTGCCAAGCACAAGGACTAGAGAAGCAATTTATGATGGAATCCATGGTGAAGGGTCCTGCAATCACTAGCCCATGTACCATGCCTCCACCATATGACCCTCCTTCTCTATTTTCAGTACTCAGGAGACAATCAAATTCAATTAAACAGGTCGAAAAATGGGAGAAGAGTTACTGGGAAAATCAACATAAGCCATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008728 GO:0008893 GO:0009116 GO:0009117 GO:0009119 GO:0009150 GO:0009259 GO:0009605 GO:0009987 GO:0009991 GO:0015969 GO:0016020 GO:0016740 GO:0016772 GO:0016778 GO:0016787 GO:0016788 GO:0016794 GO:0019637 GO:0019693 GO:0030312 GO:0031667 GO:0033865 GO:0033875 GO:0034032 GO:0034035 GO:0034641 GO:0042278 GO:0042578 GO:0042594 GO:0044237 GO:0044238 GO:0044281 GO:0044464 GO:0046128 GO:0046483 GO:0050896 GO:0055086 GO:0071704 GO:0071944 GO:0072521 GO:1901068 GO:1901135 GO:1901360 GO:1901564 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00230 map00230

Pfam Domains

Protein Families

HD_4 RelA_SpoT TGS

Protein Analysis

932

Amino Acids

108.26

Weight (kDa)

8.22

Isoelectric Point (pI)

61.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_90	PF05686	64 - 457	7.6e-186	Glycosyl transferase family 90
Glyco_transf_90	PF05686	528 - 921	1.5e-189	Glycosyl transferase family 90

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010595)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g33820 FvH4_7g33820
malus_domestica	MD07G1306500.v1.1
prunus_persica	Prupe.2G324500_v2.0.a1 Prupe.2G324500_v2.0.a1 Prupe.2G324500_v2.0.a1 Prupe.2G324500_v2.0.a1 Prupe.2G324500_v2.0.a1
pyrus_communis	pycom07g27950
rosa_chinensis	RchiOBHm_Chr1g0383931
rosa_laevigata	RLG00000026085
rosa_multiflora	Rmu_sc0005139.1_g000026
rosa_roxburghii	Rroxscaffold_4G00277130
rosa_rugosa	Rorug01G0443100 Rorug01G0443200 Rorug01G0443400.1 Rorug01G0443500.1
rosa_samantha	Rh1AG469100 Rh1CG439600 Rh1DG459600
rosa_wichuraiana	Rw1G040330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	987, 1526, 2379
Acc65I	GGTACC	2 cut(s)	1382, 1794
AccB1I	GGYRCC	2 cut(s)	1382, 1794
AccBSI	CCGCTC	1 cut(s)	1926
AccI	GTMKAC	2 cut(s)	651, 2043
AccII	CGCG	2 cut(s)	756, 2148
AccIII	TCCGGA	2 cut(s)	199, 685
AciI	CCGC	7 cut(s)	211, 500, 1675, 1872, 1892, 1924, 2087
AclWI	GGATC	8 cut(s)	164, 260, 376, 389, 862, 1652, 1768, 1781
AcoI	YGGCCR	4 cut(s)	288, 452, 1680, 1844
AcsI	RAATTY	1 cut(s)	2734
AcvI	CACGTG	2 cut(s)	195, 1587
AfiI	CCNNNNNNNGG	2 cut(s)	249, 1641
AflIII	ACRYGT	6 cut(s)	194, 264, 1122, 1586, 1656, 2508
AhdI	GACNNNNNGTC	1 cut(s)	1573
AjnI	CCWGG	2 cut(s)	406, 1798
AjuI	GAANNNNNNNTTGG	2 cut(s)	794, 826
AleI	CACNNNNGTG	1 cut(s)	1585
AloI	GAACNNNNNNTCC	2 cut(s)	419, 451
Alw21I	GWGCWC	5 cut(s)	432, 963, 1054, 1824, 2355
Alw26I	GTCTC	7 cut(s)	76, 354, 1333, 1718, 1746, 2172, 2719
Alw44I	GTGCAC	3 cut(s)	959, 1050, 2351
AlwI	GGATC	8 cut(s)	164, 260, 376, 389, 862, 1652, 1768, 1781
AlwNI	CAGNNNCTG	2 cut(s)	394, 1786
Ama87I	CYCGRG	3 cut(s)	777, 1179, 2169
Aor13HI	TCCGGA	2 cut(s)	199, 685
ApaI	GGGCCC	3 cut(s)	244, 1636, 1878
ApaLI	GTGCAC	3 cut(s)	959, 1050, 2351
ApeKI	GCWGC	7 cut(s)	8, 394, 616, 1070, 1786, 2008, 2456
ApoI	RAATTY	1 cut(s)	2734
AseI	ATTAAT	1 cut(s)	1977
Asp718I	GGTACC	2 cut(s)	1382, 1794
AsuC2I	CCSGG	1 cut(s)	1553
AsuHPI	GGTGA	9 cut(s)	112, 316, 469, 895, 1273, 1501, 1708, 1861, 2659
AvaI	CYCGRG	3 cut(s)	777, 1179, 2169
AvaII	GGWCC	8 cut(s)	226, 561, 774, 1268, 1555, 1618, 1953, 2654
AxyI	CCTNAGG	2 cut(s)	230, 1622
BaeGI	GKGCMC	6 cut(s)	244, 963, 1054, 1636, 1878, 2355
BamHI	GGATCC	2 cut(s)	381, 1773
BanI	GGYRCC	2 cut(s)	1382, 1794
BanII	GRGCYC	6 cut(s)	244, 432, 486, 1636, 1824, 1878
BauI	CACGAG	4 cut(s)	221, 940, 1613, 2332
BbrPI	CACGTG	2 cut(s)	195, 1587
BbsI	GAAGAC	2 cut(s)	541, 1933
Bbv12I	GWGCWC	5 cut(s)	432, 963, 1054, 1824, 2355
BbvCI	CCTCAGC	1 cut(s)	1434
BbvI	GCAGC	6 cut(s)	381, 628, 1082, 1773, 2020, 2468
BceAI	ACGGC	5 cut(s)	303, 331, 1376, 1695, 1723
BcgI	CGANNNNNNTGC	2 cut(s)	1483, 1517
BciT130I	CCWGG	2 cut(s)	408, 1800
BciVI	GTATCC	2 cut(s)	210, 1602
BcnI	CCSGG	1 cut(s)	1553
BcoDI	GTCTC	7 cut(s)	76, 354, 1333, 1718, 1746, 2172, 2719
BfaI	CTAG	8 cut(s)	620, 1220, 1232, 1281, 1671, 2012, 2618, 2667
BfmI	CTRYAG	9 cut(s)	9, 386, 492, 1014, 1188, 1778, 1867, 2082, 2406
BfuAI	ACCTGC	3 cut(s)	987, 1526, 2379
BfuI	GTATCC	2 cut(s)	210, 1602
BglII	AGATCT	2 cut(s)	840, 2232
BisI	GCNGC	8 cut(s)	9, 395, 617, 1071, 1787, 2009, 2088, 2457
BlsI	GCNGC	8 cut(s)	10, 396, 618, 1072, 1788, 2010, 2089, 2458
BmcAI	AGTACT	3 cut(s)	206, 1332, 2718
Bme1390I	CCNGG	3 cut(s)	408, 1553, 1800
Bme18I	GGWCC	8 cut(s)	226, 561, 774, 1268, 1555, 1618, 1953, 2654
BmeRI	GACNNNNNGTC	1 cut(s)	1573
BmeT110I	CYCGRG	3 cut(s)	777, 1179, 2169
BmrFI	CCNGG	3 cut(s)	408, 1553, 1800
BmrI	ACTGGG	1 cut(s)	2782
BmsI	GCATC	3 cut(s)	942, 1427, 2334
BmuI	ACTGGG	1 cut(s)	2782
BoxI	GACNNNNGTC	2 cut(s)	1376, 1730
BpiI	GAAGAC	2 cut(s)	541, 1933
Bpu10I	CCTNAGC	2 cut(s)	1434, 2157
BpuEI	CTTGAG	2 cut(s)	1359, 1510
BpuMI	CCSGG	1 cut(s)	1553
BsaAI	YACGTR	2 cut(s)	195, 1587
BsaI	GGTCTC	1 cut(s)	2172
BsaWI	WCCGGW	3 cut(s)	32, 199, 685
Bsc4I	CCNNNNNNNGG	2 cut(s)	249, 1641
Bse118I	RCCGGY	3 cut(s)	454, 955, 1846
Bse1I	ACTGG	8 cut(s)	455, 974, 1683, 1847, 2069, 2348, 2366, 2777
Bse21I	CCTNAGG	2 cut(s)	230, 1622
Bse3DI	GCAATG	2 cut(s)	1215, 2601
BseAI	TCCGGA	2 cut(s)	199, 685
BseBI	CCWGG	2 cut(s)	408, 1800
BseGI	GGATG	7 cut(s)	38, 578, 988, 1418, 1924, 1970, 2188
BseLI	CCNNNNNNNGG	2 cut(s)	249, 1641
BseMI	GCAATG	2 cut(s)	1215, 2601
BseMII	CTCAG	7 cut(s)	221, 779, 1448, 1613, 2171, 2601, 2734
BseNI	ACTGG	8 cut(s)	455, 974, 1683, 1847, 2069, 2348, 2366, 2777
BseRI	GAGGAG	5 cut(s)	177, 652, 1290, 2044, 2096
BseSI	GKGCMC	6 cut(s)	244, 963, 1054, 1636, 1878, 2355
BseX3I	CGGCCG	1 cut(s)	288
BseXI	GCAGC	6 cut(s)	381, 628, 1082, 1773, 2020, 2468
BsgI	GTGCAG	4 cut(s)	88, 1015, 1477, 2407
Bsh1236I	CGCG	2 cut(s)	756, 2148
Bsh1285I	CGRYCG	1 cut(s)	291
BshNI	GGYRCC	2 cut(s)	1382, 1794
BsiEI	CGRYCG	1 cut(s)	291
BsiHKAI	GWGCWC	5 cut(s)	432, 963, 1054, 1824, 2355
BsiHKCI	CYCGRG	3 cut(s)	777, 1179, 2169
BsiSI	CCGG	8 cut(s)	33, 200, 455, 686, 956, 1553, 1847, 2078
BsiWI	CGTACG	1 cut(s)	284
BslFI	GGGAC	4 cut(s)	117, 275, 1561, 1667
BslI	CCNNNNNNNGG	2 cut(s)	249, 1641
BsmAI	GTCTC	7 cut(s)	76, 354, 1333, 1718, 1746, 2172, 2719
BsmFI	GGGAC	4 cut(s)	117, 275, 1561, 1667
BsmI	GAATGC	3 cut(s)	10, 825, 2146
Bso31I	GGTCTC	1 cut(s)	2172
BsoBI	CYCGRG	3 cut(s)	777, 1179, 2169
Bsp120I	GGGCCC	3 cut(s)	240, 1632, 1874
Bsp1286I	GDGCHC	9 cut(s)	244, 432, 486, 963, 1054, 1636, 1824, 1878, 2355
Bsp13I	TCCGGA	2 cut(s)	199, 685
Bsp143I	GATC	8 cut(s)	169, 252, 381, 840, 854, 1644, 1773, 2232
Bsp19I	CCATGG	6 cut(s)	236, 596, 1257, 1628, 1988, 2643
BspACI	CCGC	7 cut(s)	211, 500, 1675, 1872, 1892, 1924, 2087
BspCNI	CTCAG	7 cut(s)	222, 778, 1447, 1614, 2170, 2600, 2733
BspEI	TCCGGA	2 cut(s)	199, 685
BspFNI	CGCG	2 cut(s)	756, 2148
BspMAI	CTGCAG	1 cut(s)	13
BspMI	ACCTGC	3 cut(s)	987, 1526, 2379
BspPI	GGATC	8 cut(s)	164, 260, 376, 389, 862, 1652, 1768, 1781
BspT107I	GGYRCC	2 cut(s)	1382, 1794
BspTNI	GGTCTC	1 cut(s)	2172
BsrBI	CCGCTC	1 cut(s)	1926
BsrDI	GCAATG	2 cut(s)	1215, 2601
BsrFI	RCCGGY	3 cut(s)	454, 955, 1846
BsrI	ACTGG	8 cut(s)	455, 974, 1683, 1847, 2069, 2348, 2366, 2777
BssAI	RCCGGY	3 cut(s)	454, 955, 1846
BssMI	GATC	8 cut(s)	169, 252, 381, 840, 854, 1644, 1773, 2232
BssSI	CACGAG	4 cut(s)	221, 940, 1613, 2332
BssT1I	CCWWGG	6 cut(s)	236, 596, 1257, 1628, 1988, 2643
Bst2BI	CACGAG	4 cut(s)	221, 940, 1613, 2332
Bst2UI	CCWGG	2 cut(s)	408, 1800
Bst4CI	ACNGT	7 cut(s)	131, 179, 390, 521, 1571, 1782, 1913
Bst6I	CTCTTC	3 cut(s)	160, 1552, 2759
BstBAI	YACGTR	2 cut(s)	195, 1587
BstC8I	GCNNGC	9 cut(s)	482, 750, 754, 817, 1216, 1874, 2146, 2209, 2602
BstDEI	CTNAG	8 cut(s)	230, 765, 1334, 1434, 1622, 2157, 2587, 2720
BstDSI	CCRYGG	6 cut(s)	236, 596, 1257, 1628, 1988, 2643
BstF5I	GGATG	7 cut(s)	38, 578, 988, 1418, 1924, 1970, 2188
BstFNI	CGCG	2 cut(s)	756, 2148
BstKTI	GATC	8 cut(s)	172, 255, 384, 843, 857, 1647, 1776, 2235
BstMAI	GTCTC	7 cut(s)	76, 354, 1333, 1718, 1746, 2172, 2719
BstMBI	GATC	8 cut(s)	169, 252, 381, 840, 854, 1644, 1773, 2232
BstMCI	CGRYCG	1 cut(s)	291
BstMWI	GCNNNNNNNGC	6 cut(s)	1165, 1220, 1527, 2087, 2551, 2606
BstNI	CCWGG	2 cut(s)	408, 1800
BstNSI	RCATGY	3 cut(s)	752, 1126, 2512
BstPAI	GACNNNNGTC	2 cut(s)	1376, 1730
BstSCI	CCNGG	3 cut(s)	406, 1551, 1798
BstSFI	CTRYAG	9 cut(s)	9, 386, 492, 1014, 1188, 1778, 1867, 2082, 2406
BstSLI	GKGCMC	6 cut(s)	244, 963, 1054, 1636, 1878, 2355
BstUI	CGCG	2 cut(s)	756, 2148
BstV1I	GCAGC	6 cut(s)	381, 628, 1082, 1773, 2020, 2468
BstV2I	GAAGAC	2 cut(s)	541, 1933
BstX2I	RGATCY	6 cut(s)	169, 381, 840, 854, 1773, 2232
BstYI	RGATCY	6 cut(s)	169, 381, 840, 854, 1773, 2232
BstZI	CGGCCG	1 cut(s)	288
Bsu36I	CCTNAGG	2 cut(s)	230, 1622
BsuI	GTATCC	2 cut(s)	210, 1602
BtgI	CCRYGG	6 cut(s)	236, 596, 1257, 1628, 1988, 2643
BtsCI	GGATG	7 cut(s)	38, 578, 988, 1418, 1924, 1970, 2188
BtsI	GCAGTG	1 cut(s)	1494
BtsIMutI	CAGTG	3 cut(s)	105, 1494, 2355
BveI	ACCTGC	3 cut(s)	987, 1526, 2379
Cac8I	GCNNGC	9 cut(s)	482, 750, 754, 817, 1216, 1874, 2146, 2209, 2602
CaiI	CAGNNNCTG	2 cut(s)	394, 1786
Cfr10I	RCCGGY	3 cut(s)	454, 955, 1846
CspCI	CAANNNNNGTGG	2 cut(s)	1586, 1621
DdeI	CTNAG	8 cut(s)	230, 765, 1334, 1434, 1622, 2157, 2587, 2720
DpnI	GATC	8 cut(s)	171, 254, 383, 842, 856, 1646, 1775, 2234
DpnII	GATC	8 cut(s)	169, 252, 381, 840, 854, 1644, 1773, 2232
DriI	GACNNNNNGTC	1 cut(s)	1573
EaeI	YGGCCR	4 cut(s)	288, 452, 1680, 1844
EagI	CGGCCG	1 cut(s)	288
Eam1104I	CTCTTC	3 cut(s)	160, 1552, 2759
Eam1105I	GACNNNNNGTC	1 cut(s)	1573
EarI	CTCTTC	3 cut(s)	160, 1552, 2759
EciI	GGCGGA	1 cut(s)	1690
Ecl136II	GAGCTC	2 cut(s)	430, 1822
EclXI	CGGCCG	1 cut(s)	288
Eco130I	CCWWGG	6 cut(s)	236, 596, 1257, 1628, 1988, 2643
Eco24I	GRGCYC	6 cut(s)	244, 432, 486, 1636, 1824, 1878
Eco31I	GGTCTC	1 cut(s)	2172
Eco47I	GGWCC	8 cut(s)	226, 561, 774, 1268, 1555, 1618, 1953, 2654
Eco52I	CGGCCG	1 cut(s)	288
Eco53kI	GAGCTC	2 cut(s)	430, 1822
Eco72I	CACGTG	2 cut(s)	195, 1587
Eco81I	CCTNAGG	2 cut(s)	230, 1622
Eco88I	CYCGRG	3 cut(s)	777, 1179, 2169
EcoICRI	GAGCTC	2 cut(s)	430, 1822
EcoO109I	RGGNCCY	4 cut(s)	226, 1268, 1618, 2654
EcoRII	CCWGG	2 cut(s)	406, 1798
EcoT14I	CCWWGG	6 cut(s)	236, 596, 1257, 1628, 1988, 2643
EcoT22I	ATGCAT	1 cut(s)	827
EcoT38I	GRGCYC	6 cut(s)	244, 432, 486, 1636, 1824, 1878
ErhI	CCWWGG	6 cut(s)	236, 596, 1257, 1628, 1988, 2643
FaqI	GGGAC	4 cut(s)	117, 275, 1561, 1667
FauI	CCCGC	3 cut(s)	507, 1865, 1899
FauNDI	CATATG	2 cut(s)	1306, 2692
FblI	GTMKAC	2 cut(s)	651, 2043
Fnu4HI	GCNGC	8 cut(s)	9, 395, 617, 1071, 1787, 2009, 2088, 2457
FokI	GGATG	7 cut(s)	25, 585, 995, 1405, 1931, 1977, 2195
FriOI	GRGCYC	6 cut(s)	244, 432, 486, 1636, 1824, 1878
Fsp4HI	GCNGC	8 cut(s)	9, 395, 617, 1071, 1787, 2009, 2088, 2457
FspBI	CTAG	8 cut(s)	620, 1220, 1232, 1281, 1671, 2012, 2618, 2667
GluI	GCNGC	8 cut(s)	9, 395, 617, 1071, 1787, 2009, 2088, 2457
HapII	CCGG	8 cut(s)	33, 200, 455, 686, 956, 1553, 1847, 2078
HincII	GTYRAC	2 cut(s)	448, 1840
HindII	GTYRAC	2 cut(s)	448, 1840
HpaII	CCGG	8 cut(s)	33, 200, 455, 686, 956, 1553, 1847, 2078
HphI	GGTGA	9 cut(s)	112, 316, 469, 895, 1273, 1501, 1708, 1861, 2659
Hpy166II	GTNNAC	9 cut(s)	313, 448, 652, 961, 1052, 1705, 1840, 2044, 2353
Hpy188I	TCNGA	9 cut(s)	354, 733, 768, 808, 1746, 2125, 2200, 2568, 2590
Hpy8I	GTNNAC	9 cut(s)	313, 448, 652, 961, 1052, 1705, 1840, 2044, 2353
HpyCH4III	ACNGT	7 cut(s)	131, 179, 390, 521, 1571, 1782, 1913
HpyCH4IV	ACGT	5 cut(s)	194, 266, 1586, 1658, 1731
HpyF10VI	GCNNNNNNNGC	6 cut(s)	1165, 1220, 1527, 2087, 2551, 2606
HpyF3I	CTNAG	8 cut(s)	230, 765, 1334, 1434, 1622, 2157, 2587, 2720
HpySE526I	ACGT	5 cut(s)	194, 266, 1586, 1658, 1731
Kpn2I	TCCGGA	2 cut(s)	199, 685
KpnI	GGTACC	2 cut(s)	1386, 1798
Kzo9I	GATC	8 cut(s)	169, 252, 381, 840, 854, 1644, 1773, 2232
LmnI	GCTCC	6 cut(s)	427, 598, 639, 1819, 1990, 2031
Lsp1109I	GCAGC	6 cut(s)	381, 628, 1082, 1773, 2020, 2468
LweI	GCATC	3 cut(s)	942, 1427, 2334
MaeI	CTAG	8 cut(s)	620, 1220, 1232, 1281, 1671, 2012, 2618, 2667
MaeII	ACGT	5 cut(s)	194, 266, 1586, 1658, 1731
MalI	GATC	8 cut(s)	171, 254, 383, 842, 856, 1646, 1775, 2234
MbiI	CCGCTC	1 cut(s)	1926
MboI	GATC	8 cut(s)	169, 252, 381, 840, 854, 1644, 1773, 2232
MflI	RGATCY	6 cut(s)	169, 381, 840, 854, 1773, 2232
MhlI	GDGCHC	9 cut(s)	244, 432, 486, 963, 1054, 1636, 1824, 1878, 2355
MlyI	GAGTC	2 cut(s)	78, 1366
MmeI	TCCRAC	1 cut(s)	1586
Mph1103I	ATGCAT	1 cut(s)	827
MroI	TCCGGA	2 cut(s)	199, 685
MslI	CAYNNNNRTG	1 cut(s)	1585
MspA1I	CMGCKG	1 cut(s)	213
MspI	CCGG	8 cut(s)	33, 200, 455, 686, 956, 1553, 1847, 2078
MspR9I	CCNGG	3 cut(s)	408, 1553, 1800
Mva1269I	GAATGC	3 cut(s)	10, 825, 2146
MvaI	CCWGG	2 cut(s)	408, 1800
MvnI	CGCG	2 cut(s)	756, 2148
MwoI	GCNNNNNNNGC	6 cut(s)	1165, 1220, 1527, 2087, 2551, 2606
NciI	CCSGG	1 cut(s)	1553
NcoI	CCATGG	6 cut(s)	236, 596, 1257, 1628, 1988, 2643
NdeI	CATATG	2 cut(s)	1306, 2692
NdeII	GATC	8 cut(s)	169, 252, 381, 840, 854, 1644, 1773, 2232
NmeAIII	GCCGAG	1 cut(s)	1367
NmuCI	GTSAC	2 cut(s)	872, 901
NsiI	ATGCAT	1 cut(s)	827
NspI	RCATGY	3 cut(s)	752, 1126, 2512
OliI	CACNNNNGTG	1 cut(s)	1585
PaeI	GCATGC	1 cut(s)	752
PaeR7I	CTCGAG	2 cut(s)	1179, 2169
PasI	CCCWGGG	2 cut(s)	407, 1799
PciI	ACATGT	2 cut(s)	1122, 2508
PctI	GAATGC	3 cut(s)	10, 825, 2146
Pfl23II	CGTACG	1 cut(s)	284
PkrI	GCNGC	8 cut(s)	10, 396, 618, 1072, 1788, 2010, 2089, 2458
PleI	GAGTC	2 cut(s)	78, 1366
PmaCI	CACGTG	2 cut(s)	195, 1587
PmlI	CACGTG	2 cut(s)	195, 1587
PpsI	GAGTC	2 cut(s)	78, 1366
Ppu21I	YACGTR	2 cut(s)	195, 1587
PpuMI	RGGWCCY	4 cut(s)	226, 1268, 1618, 2654
PscI	ACATGT	2 cut(s)	1122, 2508
PshAI	GACNNNNGTC	2 cut(s)	1376, 1730
PshBI	ATTAAT	1 cut(s)	1977
Psp124BI	GAGCTC	2 cut(s)	432, 1824
Psp5II	RGGWCCY	4 cut(s)	226, 1268, 1618, 2654
Psp6I	CCWGG	2 cut(s)	406, 1798
PspCI	CACGTG	2 cut(s)	195, 1587
PspGI	CCWGG	2 cut(s)	406, 1798
PspLI	CGTACG	1 cut(s)	284
PspOMI	GGGCCC	3 cut(s)	240, 1632, 1874
PspPPI	RGGWCCY	4 cut(s)	226, 1268, 1618, 2654
PstI	CTGCAG	1 cut(s)	13
PstNI	CAGNNNCTG	2 cut(s)	394, 1786
PsuI	RGATCY	6 cut(s)	169, 381, 840, 854, 1773, 2232
RseI	CAYNNNNRTG	1 cut(s)	1585
SacI	GAGCTC	2 cut(s)	432, 1824
SatI	GCNGC	8 cut(s)	9, 395, 617, 1071, 1787, 2009, 2088, 2457
Sau3AI	GATC	8 cut(s)	169, 252, 381, 840, 854, 1644, 1773, 2232
ScaI	AGTACT	3 cut(s)	206, 1332, 2718
SchI	GAGTC	2 cut(s)	78, 1366
ScrFI	CCNGG	3 cut(s)	408, 1553, 1800
SduI	GDGCHC	9 cut(s)	244, 432, 486, 963, 1054, 1636, 1824, 1878, 2355
SfaNI	GCATC	3 cut(s)	942, 1427, 2334
SfcI	CTRYAG	9 cut(s)	9, 386, 492, 1014, 1188, 1778, 1867, 2082, 2406
Sfr274I	CTCGAG	2 cut(s)	1179, 2169
SinI	GGWCC	8 cut(s)	226, 561, 774, 1268, 1555, 1618, 1953, 2654
SlaI	CTCGAG	2 cut(s)	1179, 2169
SmiMI	CAYNNNNRTG	1 cut(s)	1585
SmlI	CTYRAG	4 cut(s)	1179, 1374, 1525, 2169
SmoI	CTYRAG	4 cut(s)	1179, 1374, 1525, 2169
SphI	GCATGC	1 cut(s)	752
SsiI	CCGC	7 cut(s)	211, 500, 1675, 1872, 1892, 1924, 2087
SspMI	CTAG	8 cut(s)	620, 1220, 1232, 1281, 1671, 2012, 2618, 2667
SstI	GAGCTC	2 cut(s)	432, 1824
StyD4I	CCNGG	3 cut(s)	406, 1551, 1798
StyI	CCWWGG	6 cut(s)	236, 596, 1257, 1628, 1988, 2643
TaaI	ACNGT	7 cut(s)	131, 179, 390, 521, 1571, 1782, 1913
TaiI	ACGT	5 cut(s)	197, 269, 1589, 1661, 1734
TatI	WGTACW	5 cut(s)	204, 879, 1330, 2271, 2716
TauI	GCSGC	1 cut(s)	2090
TscAI	CASTG	3 cut(s)	112, 1501, 2355
TseFI	GTSAC	2 cut(s)	872, 901
TseI	GCWGC	7 cut(s)	8, 394, 616, 1070, 1786, 2008, 2456
Tsp45I	GTSAC	2 cut(s)	872, 901
TspDTI	ATGAA	5 cut(s)	17, 818, 1118, 2210, 2504
TspGWI	ACGGA	4 cut(s)	453, 1563, 1592, 2281
TspRI	CASTG	3 cut(s)	112, 1501, 2355
VneI	GTGCAC	3 cut(s)	959, 1050, 2351
VpaK11BI	GGWCC	8 cut(s)	226, 561, 774, 1268, 1555, 1618, 1953, 2654
VspI	ATTAAT	1 cut(s)	1977
XapI	RAATTY	1 cut(s)	2734
XceI	RCATGY	3 cut(s)	752, 1126, 2512
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1690
XhoI	CTCGAG	2 cut(s)	1179, 2169
XmiI	GTMKAC	2 cut(s)	651, 2043
XspI	CTAG	8 cut(s)	620, 1220, 1232, 1281, 1671, 2012, 2618, 2667
ZrmI	AGTACT	3 cut(s)	206, 1332, 2718
Zsp2I	ATGCAT	1 cut(s)	827

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.