Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005142.1

Orthogroup ID

OG0007366

Physical Location & Seq

Genomic Coordinates Reverse (-)

4488 .. 8297

Gene Structure 3810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

atgacaccggaaacaaaatcacaaaccgacaccttggctacccaaatcttctctgggcacccaaaatgtttttttttctttccaacaacggttctcggtgactcagcttggctccatcttcacccgacaacatcacatcccggctgcacaatatcttctcctggtgaccaacaccacctcctcccggtgacccacctctcggtgtcgatctcggcactgatatcaaacttggaagcatctctctcggtgactcaccgatgtgaaccaaatgagaatattcctctatcgttaaatccgattgaactcaaatgcttccaatttaatggcgggggagtgccagtttcgttctgtccgagcggaattcgtgaggaatttcaattcaactcggatgcttctcggaaagttcgcgtcttggataataagatacctatactcgaaaacttgggagctacagaggaccaatttgacaccattgatttgtctgacaatgaaattgttaagctggaaaacttgccctatctttatcgtttgggtactttgattattaataacaatagaattacccatatcaatcccaacattggagagttcttgctgaagttacatactttagtacttaccaacaacatgctagtcaacttggtagagattgatcctcttgcatccctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015030 GO:0016070 GO:0016071 GO:0016604 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

LRR_9

Protein Analysis

223

Amino Acids

24.71

Weight (kDa)

5.35

Isoelectric Point (pI)

31.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_9	PF14580	128 - 223	3.7e-37	Leucine-rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09760
fragaria_vesca	FvH4_4g21991
malus_domestica	MD13G1135200.v1.1 MD16G1130900.v1.1
prunus_persica	Prupe.1G210100_v2.0.a1
pyrus_communis	pycom13g11800 pycom16g11540
rosa_chinensis	RchiOBHm_Chr4g0428191
rosa_laevigata	RLG00000007171
rosa_multiflora	Rmu_sc0000744.1_g000083 Rmu_sc0004940.1_g000005 Rmu_sc0005142.1_g000001 Rmu_sc0009599.1_g000004
rosa_roxburghii	Rroxscaffold_5G00369920
rosa_rugosa	Rorug04G0182200 Rorug04G0182300 Rorug04G0182400 Rorug04G0182500 Rorug04G0223400 Rorug04G0223500
rosa_samantha	Rh4AG280700 Rh4BG286200 Rh4CG301900
rosa_wichuraiana	Rw4G020900 Rw4G024380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	57
AccBSI	CCGCTC	1 cut(s)	357
AccII	CGCG	1 cut(s)	408
AciI	CCGC	2 cut(s)	327, 357
AclWI	GGATC	1 cut(s)	647
AcsI	RAATTY	2 cut(s)	360, 371
AcuI	CTGAAG	1 cut(s)	617
AfaI	GTAC	2 cut(s)	535, 615
AfiI	CCNNNNNNNGG	3 cut(s)	184, 199, 581
AgsI	TTSAA	3 cut(s)	302, 377, 382
AjnI	CCWGG	1 cut(s)	160
AleI	CACNNNNGTG	1 cut(s)	258
AluBI	AGCT	3 cut(s)	107, 449, 502
AluI	AGCT	3 cut(s)	107, 449, 502
AlwI	GGATC	1 cut(s)	647
ApeKI	GCWGC	1 cut(s)	144
ApoI	RAATTY	2 cut(s)	360, 371
AseI	ATTAAT	1 cut(s)	546
AspS9I	GGNCC	1 cut(s)	457
AsuC2I	CCSGG	2 cut(s)	141, 185
AsuHPI	GGTGA	6 cut(s)	110, 113, 176, 199, 245, 259
AvaII	GGWCC	1 cut(s)	457
BaeGI	GKGCMC	1 cut(s)	60
BanI	GGYRCC	1 cut(s)	57
BbvI	GCAGC	1 cut(s)	131
BccI	CCATC	1 cut(s)	123
BcgI	CGANNNNNNTGC	2 cut(s)	225, 259
BciT130I	CCWGG	1 cut(s)	162
BcnI	CCSGG	2 cut(s)	141, 185
BfaI	CTAG	1 cut(s)	632
BfmI	CTRYAG	1 cut(s)	450
BisI	GCNGC	1 cut(s)	145
BlsI	GCNGC	1 cut(s)	146
BmcAI	AGTACT	1 cut(s)	615
Bme1390I	CCNGG	3 cut(s)	141, 162, 185
Bme18I	GGWCC	1 cut(s)	457
BmgT120I	GGNCC	1 cut(s)	457
BmiI	GGNNCC	2 cut(s)	59, 113
BmrFI	CCNGG	3 cut(s)	141, 162, 185
BmsI	GCATC	2 cut(s)	245, 379
BpuMI	CCSGG	2 cut(s)	141, 185
BsaJI	CCNNGG	1 cut(s)	33
BsaWI	WCCGGW	1 cut(s)	7
BsaXI	ACNNNNNCTCC	4 cut(s)	162, 192, 324, 354
Bsc4I	CCNNNNNNNGG	3 cut(s)	184, 199, 581
Bse1I	ACTGG	1 cut(s)	338
BseBI	CCWGG	1 cut(s)	162
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	3 cut(s)	136, 394, 662
BseLI	CCNNNNNNNGG	3 cut(s)	184, 199, 581
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	1 cut(s)	338
BseRI	GAGGAG	1 cut(s)	170
BseSI	GKGCMC	1 cut(s)	60
BseXI	GCAGC	1 cut(s)	131
BsgI	GTGCAG	1 cut(s)	130
Bsh1236I	CGCG	1 cut(s)	408
BshNI	GGYRCC	1 cut(s)	57
BsiSI	CCGG	3 cut(s)	8, 141, 185
BslI	CCNNNNNNNGG	3 cut(s)	184, 199, 581
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp143I	GATC	2 cut(s)	207, 652
BspACI	CCGC	2 cut(s)	327, 357
BspCNI	CTCAG	1 cut(s)	116
BspFNI	CGCG	1 cut(s)	408
BspLI	GGNNCC	2 cut(s)	59, 113
BspPI	GGATC	1 cut(s)	647
BspT107I	GGYRCC	1 cut(s)	57
BsrBI	CCGCTC	1 cut(s)	357
BsrI	ACTGG	1 cut(s)	338
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	2 cut(s)	207, 652
BssT1I	CCWWGG	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	1 cut(s)	91
BstDEI	CTNAG	1 cut(s)	103
BstEII	GGTNACC	2 cut(s)	164, 187
BstF5I	GGATG	3 cut(s)	136, 394, 662
BstFNI	CGCG	1 cut(s)	408
BstKTI	GATC	2 cut(s)	210, 655
BstMBI	GATC	2 cut(s)	207, 652
BstNI	CCWGG	1 cut(s)	162
BstNSI	RCATGY	1 cut(s)	631
BstPI	GGTNACC	2 cut(s)	164, 187
BstSCI	CCNGG	3 cut(s)	139, 160, 183
BstSFI	CTRYAG	1 cut(s)	450
BstSLI	GKGCMC	1 cut(s)	60
BstUI	CGCG	1 cut(s)	408
BstV1I	GCAGC	1 cut(s)	131
BstXI	CCANNNNNNTGG	1 cut(s)	323
BtsCI	GGATG	3 cut(s)	136, 394, 662
BtsIMutI	CAGTG	1 cut(s)	215
Cfr13I	GGNCC	1 cut(s)	457
CseI	GACGC	1 cut(s)	397
Csp6I	GTAC	2 cut(s)	534, 614
CviAII	CATG	1 cut(s)	628
CviJI	RGCY	6 cut(s)	38, 107, 112, 144, 449, 502
CviKI_1	RGCY	6 cut(s)	38, 107, 112, 144, 449, 502
CviQI	GTAC	2 cut(s)	534, 614
DdeI	CTNAG	1 cut(s)	103
DpnI	GATC	2 cut(s)	209, 654
DpnII	GATC	2 cut(s)	207, 652
Eco130I	CCWWGG	1 cut(s)	33
Eco32I	GATATC	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	457
Eco57I	CTGAAG	1 cut(s)	617
Eco91I	GGTNACC	2 cut(s)	164, 187
EcoO65I	GGTNACC	2 cut(s)	164, 187
EcoRI	GAATTC	1 cut(s)	360
EcoRII	CCWGG	1 cut(s)	160
EcoRV	GATATC	1 cut(s)	222
EcoT14I	CCWWGG	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	1 cut(s)	631
FaiI	YATR	4 cut(s)	431, 567, 606, 629
FatI	CATG	1 cut(s)	627
FauI	CCCGC	1 cut(s)	320
Fnu4HI	GCNGC	1 cut(s)	145
FokI	GGATG	3 cut(s)	123, 401, 649
Fsp4HI	GCNGC	1 cut(s)	145
FspBI	CTAG	1 cut(s)	632
GluI	GCNGC	1 cut(s)	145
HapII	CCGG	3 cut(s)	8, 141, 185
HgaI	GACGC	1 cut(s)	397
Hin1II	CATG	1 cut(s)	631
HincII	GTYRAC	1 cut(s)	637
HindII	GTYRAC	1 cut(s)	637
HinfI	GANTC	2 cut(s)	101, 250
HpaII	CCGG	3 cut(s)	8, 141, 185
HphI	GGTGA	6 cut(s)	110, 113, 176, 199, 245, 259
Hpy166II	GTNNAC	2 cut(s)	263, 637
Hpy188I	TCNGA	5 cut(s)	297, 354, 388, 399, 484
Hpy188III	TCNNGA	1 cut(s)	365
Hpy8I	GTNNAC	2 cut(s)	263, 637
HpyCH4III	ACNGT	1 cut(s)	91
HpyCH4V	TGCA	2 cut(s)	147, 662
HpyF3I	CTNAG	1 cut(s)	103
Hsp92II	CATG	1 cut(s)	631
Kzo9I	GATC	2 cut(s)	207, 652
LmnI	GCTCC	2 cut(s)	117, 446
LpnPI	CCDG	8 cut(s)	21, 39, 147, 154, 174, 198, 351, 488
Lsp1109I	GCAGC	1 cut(s)	131
LweI	GCATC	2 cut(s)	245, 379
MaeI	CTAG	1 cut(s)	632
MaeIII	GTNAC	5 cut(s)	98, 164, 187, 247, 600
MalI	GATC	2 cut(s)	209, 654
MbiI	CCGCTC	1 cut(s)	357
MboI	GATC	2 cut(s)	207, 652
MboII	GAAGA	3 cut(s)	40, 110, 147
MhlI	GDGCHC	1 cut(s)	60
MluCI	AATT	7 cut(s)	317, 360, 371, 377, 461, 492, 558
MlyI	GAGTC	2 cut(s)	95, 244
MmeI	TCCRAC	1 cut(s)	107
MnlI	CCTC	7 cut(s)	188, 191, 206, 291, 361, 448, 666
MseI	TTAA	4 cut(s)	290, 321, 498, 546
MslI	CAYNNNNRTG	1 cut(s)	258
MspI	CCGG	3 cut(s)	8, 141, 185
MspR9I	CCNGG	3 cut(s)	141, 162, 185
MvaI	CCWGG	1 cut(s)	162
MvnI	CGCG	1 cut(s)	408
NciI	CCSGG	2 cut(s)	141, 185
NdeII	GATC	2 cut(s)	207, 652
NlaIII	CATG	1 cut(s)	631
NlaIV	GGNNCC	2 cut(s)	59, 113
NmeAIII	GCCGAG	1 cut(s)	191
NmuCI	GTSAC	4 cut(s)	98, 164, 187, 247
NspI	RCATGY	1 cut(s)	631
OliI	CACNNNNGTG	1 cut(s)	258
PcsI	WCGNNNNNNNCGW	2 cut(s)	293, 350
PkrI	GCNGC	1 cut(s)	146
PleI	GAGTC	2 cut(s)	95, 244
PpsI	GAGTC	2 cut(s)	95, 244
PshBI	ATTAAT	1 cut(s)	546
Psp6I	CCWGG	1 cut(s)	160
PspEI	GGTNACC	2 cut(s)	164, 187
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	2 cut(s)	59, 113
PspPI	GGNCC	1 cut(s)	457
RsaI	GTAC	2 cut(s)	535, 615
RsaNI	GTAC	2 cut(s)	534, 614
RseI	CAYNNNNRTG	1 cut(s)	258
SaqAI	TTAA	4 cut(s)	290, 321, 498, 546
SatI	GCNGC	1 cut(s)	145
Sau3AI	GATC	2 cut(s)	207, 652
Sau96I	GGNCC	1 cut(s)	457
ScaI	AGTACT	1 cut(s)	615
SchI	GAGTC	2 cut(s)	95, 244
ScrFI	CCNGG	3 cut(s)	141, 162, 185
SduI	GDGCHC	1 cut(s)	60
SetI	ASST	7 cut(s)	35, 109, 180, 198, 430, 451, 504
SfaNI	GCATC	2 cut(s)	245, 379
SfcI	CTRYAG	1 cut(s)	450
SinI	GGWCC	1 cut(s)	457
SmiMI	CAYNNNNRTG	1 cut(s)	258
Sse9I	AATT	7 cut(s)	317, 360, 371, 377, 461, 492, 558
SsiI	CCGC	2 cut(s)	327, 357
SspI	AATATT	1 cut(s)	277
SspMI	CTAG	1 cut(s)	632
StyD4I	CCNGG	3 cut(s)	139, 160, 183
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	1 cut(s)	91
TaqI	TCGA	2 cut(s)	206, 435
TasI	AATT	7 cut(s)	317, 360, 371, 377, 461, 492, 558
TatI	WGTACW	1 cut(s)	613
Tru1I	TTAA	4 cut(s)	290, 321, 498, 546
Tru9I	TTAA	4 cut(s)	290, 321, 498, 546
TscAI	CASTG	1 cut(s)	222
TseFI	GTSAC	4 cut(s)	98, 164, 187, 247
TseI	GCWGC	1 cut(s)	144
Tsp45I	GTSAC	4 cut(s)	98, 164, 187, 247
TspDTI	ATGAA	1 cut(s)	504
TspRI	CASTG	1 cut(s)	222
VpaK11BI	GGWCC	1 cut(s)	457
VspI	ATTAAT	1 cut(s)	546
XapI	RAATTY	2 cut(s)	360, 371
XceI	RCATGY	1 cut(s)	631
XcmI	CCANNNNNNNNNTGG	1 cut(s)	50
XspI	CTAG	1 cut(s)	632
ZrmI	AGTACT	1 cut(s)	615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.