Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005523.1

Orthogroup ID

OG0012231

Physical Location & Seq

Genomic Coordinates Reverse (-)

60515 .. 61360

Gene Structure 846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

atgcaagcgcttttcgatctcaagagcttcatcagacccgaaagtggccctagaaacaagctagcatctcctcatgaccatgagaagaaagattcctccccctcccaggtagagatgcacccgggaggaacgcgttggaatccaacacaagagcagatagggatattggaaatgctgtatagaggaggaatgcggactccgaatgctcagcagatagagcaaatcactgctcagcttggcaagtatggcaagattgaaggcaagaatgtgttctactggttccaaaatcacaaagcacgcgaaagacaaaagcagaaacgcagcactcttggtctcacccactctccaagaaccccgactcctgtaattaccaccaccggggaagtactggaaagagaggaagacagtccatacaagagaaagtgcaggagctgggcatttgattgtttgggagacgattctagtactataacttgtaacaaagacgtcgttgagggagatagaactctggagctcttcccattacgcccagaaggcatgagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051716 GO:0061458 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

181

Amino Acids

20.76

Weight (kDa)

8.99

Isoelectric Point (pI)

64.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	44 - 103	6.6e-15	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G46480 AT1G46480
fragaria_vesca	FvH4_2g34030 FvH4_2g34030
malus_domestica	MD08G1096300.v1.1 MD15G1079000.v1.1
prunus_persica	Prupe.1G432100_v2.0.a1
pyrus_communis	pycom08g07830 pycom15g07360
rosa_chinensis	RchiOBHm_Chr6g0308351
rosa_laevigata	RLG00000010648
rosa_multiflora	Rmu_sc0005523.1_g000011
rosa_roxburghii	Rroxscaffold_7G00160220
rosa_rugosa	Rorug06G0366200
rosa_samantha	Rh6AG475500 Rh6BG485900 Rh6CG491100 Rh6DG477400
rosa_wichuraiana	Rw6G041450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	489
AccII	CGCG	2 cut(s)	133, 300
AciI	CCGC	1 cut(s)	193
AcyI	GRCGYC	1 cut(s)	486
AfaI	GTAC	2 cut(s)	387, 466
AfeI	AGCGCT	1 cut(s)	9
AfiI	CCNNNNNNNGG	3 cut(s)	44, 106, 378
AflIII	ACRYGT	1 cut(s)	131
AgsI	TTSAA	1 cut(s)	257
AjnI	CCWGG	1 cut(s)	105
AloI	GAACNNNNNNTCC	2 cut(s)	343, 375
AluBI	AGCT	5 cut(s)	27, 61, 235, 432, 514
AluI	AGCT	5 cut(s)	27, 61, 235, 432, 514
Alw21I	GWGCWC	1 cut(s)	516
Alw26I	GTCTC	2 cut(s)	338, 447
AlwNI	CAGNNNCTG	1 cut(s)	432
Ama87I	CYCGRG	1 cut(s)	121
Aor51HI	AGCGCT	1 cut(s)	9
AoxI	GGCC	1 cut(s)	46
ApeKI	GCWGC	1 cut(s)	321
Asp700I	GAANNNNTTC	1 cut(s)	269
AspLEI	GCGC	1 cut(s)	10
AspS9I	GGNCC	1 cut(s)	47
AsuC2I	CCSGG	3 cut(s)	122, 123, 379
AsuHPI	GGTGA	1 cut(s)	328
AsuNHI	GCTAGC	1 cut(s)	61
AvaI	CYCGRG	1 cut(s)	121
BanII	GRGCYC	1 cut(s)	516
BbsI	GAAGAC	1 cut(s)	408
Bbv12I	GWGCWC	1 cut(s)	516
BbvI	GCAGC	1 cut(s)	333
BciT130I	CCWGG	1 cut(s)	107
BcnI	CCSGG	3 cut(s)	122, 123, 379
BcoDI	GTCTC	2 cut(s)	338, 447
BfaI	CTAG	3 cut(s)	51, 62, 462
BfoI	RGCGCY	1 cut(s)	11
BglI	GCCNNNNNGGC	1 cut(s)	534
BisI	GCNGC	1 cut(s)	322
BlpI	GCTNAGC	2 cut(s)	207, 231
BlsI	GCNGC	1 cut(s)	323
BmcAI	AGTACT	2 cut(s)	387, 466
Bme1390I	CCNGG	4 cut(s)	107, 122, 123, 379
BmeT110I	CYCGRG	1 cut(s)	121
BmgT120I	GGNCC	1 cut(s)	47
BmiI	GGNNCC	1 cut(s)	281
BmrFI	CCNGG	4 cut(s)	107, 122, 123, 379
BmsI	GCATC	2 cut(s)	74, 105
BmtI	GCTAGC	1 cut(s)	65
BpiI	GAAGAC	1 cut(s)	408
BpmI	CTGGAG	1 cut(s)	530
Bpu1102I	GCTNAGC	2 cut(s)	207, 231
BpuEI	CTTGAG	1 cut(s)	5
BpuMI	CCSGG	3 cut(s)	122, 123, 379
BsaHI	GRCGYC	1 cut(s)	486
BsaI	GGTCTC	1 cut(s)	338
BsaJI	CCNNGG	3 cut(s)	105, 121, 378
BsaXI	ACNNNNNCTCC	4 cut(s)	328, 343, 358, 373
Bsc4I	CCNNNNNNNGG	3 cut(s)	44, 106, 378
Bse1I	ACTGG	2 cut(s)	281, 393
BseBI	CCWGG	1 cut(s)	107
BseDI	CCNNGG	3 cut(s)	105, 121, 378
BseLI	CCNNNNNNNGG	3 cut(s)	44, 106, 378
BseMII	CTCAG	2 cut(s)	221, 245
BseNI	ACTGG	2 cut(s)	281, 393
BseRI	GAGGAG	2 cut(s)	60, 198
BseXI	GCAGC	1 cut(s)	333
BseYI	CCCAGC	1 cut(s)	432
BsgI	GTGCAG	1 cut(s)	445
Bsh1236I	CGCG	2 cut(s)	133, 300
BshFI	GGCC	1 cut(s)	48
BsiHKAI	GWGCWC	1 cut(s)	516
BsiHKCI	CYCGRG	1 cut(s)	121
BsiSI	CCGG	2 cut(s)	122, 378
BslI	CCNNNNNNNGG	3 cut(s)	44, 106, 378
BsmAI	GTCTC	2 cut(s)	338, 447
BsmBI	CGTCTC	1 cut(s)	447
BsmI	GAATGC	2 cut(s)	195, 208
BsnI	GGCC	1 cut(s)	48
Bso31I	GGTCTC	1 cut(s)	338
BsoBI	CYCGRG	1 cut(s)	121
Bsp1286I	GDGCHC	1 cut(s)	516
Bsp143I	GATC	1 cut(s)	16
Bsp1720I	GCTNAGC	2 cut(s)	207, 231
BspACI	CCGC	1 cut(s)	193
BspANI	GGCC	1 cut(s)	48
BspCNI	CTCAG	2 cut(s)	220, 244
BspFNI	CGCG	2 cut(s)	133, 300
BspHI	TCATGA	1 cut(s)	73
BspLI	GGNNCC	1 cut(s)	281
BspOI	GCTAGC	1 cut(s)	65
BspQI	GCTCTTC	1 cut(s)	521
BspTNI	GGTCTC	1 cut(s)	338
BsrI	ACTGG	2 cut(s)	281, 393
BssECI	CCNNGG	3 cut(s)	105, 121, 378
BssMI	GATC	1 cut(s)	16
BssNI	GRCGYC	1 cut(s)	486
Bst2UI	CCWGG	1 cut(s)	107
Bst4CI	ACNGT	1 cut(s)	407
Bst6I	CTCTTC	1 cut(s)	521
BstACI	GRCGYC	1 cut(s)	486
BstC8I	GCNNGC	3 cut(s)	6, 63, 298
BstDEI	CTNAG	2 cut(s)	207, 231
BstFNI	CGCG	2 cut(s)	133, 300
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	1 cut(s)	19
BstMAI	GTCTC	2 cut(s)	338, 447
BstMBI	GATC	1 cut(s)	16
BstMWI	GCNNNNNNNGC	3 cut(s)	217, 246, 534
BstNI	CCWGG	1 cut(s)	107
BstSCI	CCNGG	4 cut(s)	105, 120, 121, 377
BstUI	CGCG	2 cut(s)	133, 300
BstV1I	GCAGC	1 cut(s)	333
BstV2I	GAAGAC	1 cut(s)	408
BsuRI	GGCC	1 cut(s)	48
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	1 cut(s)	225
Cac8I	GCNNGC	3 cut(s)	6, 63, 298
CaiI	CAGNNNCTG	1 cut(s)	432
CciI	TCATGA	1 cut(s)	73
CfoI	GCGC	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	47
Cfr9I	CCCGGG	1 cut(s)	121
Csp6I	GTAC	2 cut(s)	386, 465
CviAII	CATG	3 cut(s)	74, 80, 538
CviJI	RGCY	6 cut(s)	27, 48, 61, 235, 432, 514
CviKI_1	RGCY	6 cut(s)	27, 48, 61, 235, 432, 514
CviQI	GTAC	2 cut(s)	386, 465
DdeI	CTNAG	2 cut(s)	207, 231
DpnI	GATC	1 cut(s)	18
DpnII	GATC	1 cut(s)	16
Eam1104I	CTCTTC	1 cut(s)	521
EarI	CTCTTC	1 cut(s)	521
Ecl136II	GAGCTC	1 cut(s)	514
Eco24I	GRGCYC	1 cut(s)	516
Eco31I	GGTCTC	1 cut(s)	338
Eco47III	AGCGCT	1 cut(s)	9
Eco53kI	GAGCTC	1 cut(s)	514
Eco88I	CYCGRG	1 cut(s)	121
EcoICRI	GAGCTC	1 cut(s)	514
EcoRII	CCWGG	1 cut(s)	105
EcoT38I	GRGCYC	1 cut(s)	516
Esp3I	CGTCTC	1 cut(s)	447
FaeI	CATG	3 cut(s)	77, 83, 541
FaiI	YATR	7 cut(s)	75, 81, 180, 246, 412, 470, 539
FatI	CATG	3 cut(s)	73, 79, 537
Fnu4HI	GCNGC	1 cut(s)	322
FriOI	GRGCYC	1 cut(s)	516
Fsp4HI	GCNGC	1 cut(s)	322
FspBI	CTAG	3 cut(s)	51, 62, 462
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	1 cut(s)	322
GsaI	CCCAGC	1 cut(s)	436
GsuI	CTGGAG	1 cut(s)	530
HaeII	RGCGCY	1 cut(s)	11
HaeIII	GGCC	1 cut(s)	48
HapII	CCGG	2 cut(s)	122, 378
HhaI	GCGC	1 cut(s)	10
Hin1I	GRCGYC	1 cut(s)	486
Hin1II	CATG	3 cut(s)	77, 83, 541
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HinfI	GANTC	5 cut(s)	92, 139, 196, 358, 458
HpaII	CCGG	2 cut(s)	122, 378
HphI	GGTGA	1 cut(s)	328
Hpy188I	TCNGA	2 cut(s)	35, 201
Hpy188III	TCNNGA	3 cut(s)	22, 74, 509
Hpy99I	CGWCG	1 cut(s)	491
HpyAV	CCTTC	2 cut(s)	251, 527
HpyCH4III	ACNGT	1 cut(s)	407
HpyCH4IV	ACGT	1 cut(s)	486
HpyCH4V	TGCA	3 cut(s)	4, 118, 426
HpyF10VI	GCNNNNNNNGC	3 cut(s)	217, 246, 534
HpyF3I	CTNAG	2 cut(s)	207, 231
HpySE526I	ACGT	1 cut(s)	486
Hsp92I	GRCGYC	1 cut(s)	486
Hsp92II	CATG	3 cut(s)	77, 83, 541
HspAI	GCGC	1 cut(s)	8
Kzo9I	GATC	1 cut(s)	16
LguI	GCTCTTC	1 cut(s)	521
LmnI	GCTCC	2 cut(s)	429, 511
Lsp1109I	GCAGC	1 cut(s)	333
LweI	GCATC	2 cut(s)	74, 105
MaeI	CTAG	3 cut(s)	51, 62, 462
MaeII	ACGT	1 cut(s)	486
MaeIII	GTNAC	1 cut(s)	476
MalI	GATC	1 cut(s)	18
MboI	GATC	1 cut(s)	16
MboII	GAAGA	3 cut(s)	97, 413, 508
MhlI	GDGCHC	1 cut(s)	516
MluCI	AATT	1 cut(s)	366
MluI	ACGCGT	1 cut(s)	131
MlyI	GAGTC	2 cut(s)	190, 352
MmeI	TCCRAC	2 cut(s)	116, 167
MnlI	CCTC	8 cut(s)	81, 106, 112, 119, 176, 179, 391, 487
MroXI	GAANNNNTTC	1 cut(s)	269
MslI	CAYNNNNRTG	1 cut(s)	78
MspI	CCGG	2 cut(s)	122, 378
MspR9I	CCNGG	4 cut(s)	107, 122, 123, 379
Mva1269I	GAATGC	2 cut(s)	195, 208
MvaI	CCWGG	1 cut(s)	107
MvnI	CGCG	2 cut(s)	133, 300
MwoI	GCNNNNNNNGC	3 cut(s)	217, 246, 534
NciI	CCSGG	3 cut(s)	122, 123, 379
NdeII	GATC	1 cut(s)	16
NheI	GCTAGC	1 cut(s)	61
NlaIII	CATG	3 cut(s)	77, 83, 541
NlaIV	GGNNCC	1 cut(s)	281
PagI	TCATGA	1 cut(s)	73
PciSI	GCTCTTC	1 cut(s)	521
PctI	GAATGC	2 cut(s)	195, 208
PdmI	GAANNNNTTC	1 cut(s)	269
PfeI	GAWTC	3 cut(s)	92, 139, 458
PkrI	GCNGC	1 cut(s)	323
PleI	GAGTC	2 cut(s)	190, 352
PpsI	GAGTC	2 cut(s)	190, 352
Psp124BI	GAGCTC	1 cut(s)	516
Psp6I	CCWGG	1 cut(s)	105
PspFI	CCCAGC	1 cut(s)	432
PspGI	CCWGG	1 cut(s)	105
PspN4I	GGNNCC	1 cut(s)	281
PspPI	GGNCC	1 cut(s)	47
PstNI	CAGNNNCTG	1 cut(s)	432
RsaI	GTAC	2 cut(s)	387, 466
RsaNI	GTAC	2 cut(s)	386, 465
RseI	CAYNNNNRTG	1 cut(s)	78
SacI	GAGCTC	1 cut(s)	516
SapI	GCTCTTC	1 cut(s)	521
SatI	GCNGC	1 cut(s)	322
Sau3AI	GATC	1 cut(s)	16
Sau96I	GGNCC	1 cut(s)	47
ScaI	AGTACT	2 cut(s)	387, 466
SchI	GAGTC	2 cut(s)	190, 352
ScrFI	CCNGG	4 cut(s)	107, 122, 123, 379
SduI	GDGCHC	1 cut(s)	516
SetI	ASST	7 cut(s)	29, 63, 111, 237, 434, 489, 516
SfaNI	GCATC	2 cut(s)	74, 105
SmaI	CCCGGG	1 cut(s)	123
SmiMI	CAYNNNNRTG	1 cut(s)	78
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
Sse9I	AATT	1 cut(s)	366
SsiI	CCGC	1 cut(s)	193
SspMI	CTAG	3 cut(s)	51, 62, 462
SstI	GAGCTC	1 cut(s)	516
StyD4I	CCNGG	4 cut(s)	105, 120, 121, 377
TaaI	ACNGT	1 cut(s)	407
TaiI	ACGT	1 cut(s)	489
TaqI	TCGA	1 cut(s)	15
TasI	AATT	1 cut(s)	366
TatI	WGTACW	2 cut(s)	385, 464
TfiI	GAWTC	3 cut(s)	92, 139, 458
TscAI	CASTG	1 cut(s)	232
TseI	GCWGC	1 cut(s)	321
TspDTI	ATGAA	1 cut(s)	19
TspMI	CCCGGG	1 cut(s)	121
TspRI	CASTG	1 cut(s)	232
XmaI	CCCGGG	1 cut(s)	121
XmnI	GAANNNNTTC	1 cut(s)	269
XspI	CTAG	3 cut(s)	51, 62, 462
ZraI	GACGTC	1 cut(s)	487
ZrmI	AGTACT	2 cut(s)	387, 466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.