Rmu_sc0005597.1_g000009

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005597.1
Physical Location & Seq
Forward (+)
65403 .. 67400
1998 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005597.1_g000009.1.cds

Sequence Viewer

Length: 1998 bp
atgcatgctcgtattctagtctcaactgggttcaagcccctcaatcttttttcaaagttggtttctttgtatgctcggttcaatgaccttggcagcgctgtttcggttttcagttccctacaagaaccaaataccatgctgtggaatctaatcataaggacccacattgaatcgggtcgtcttgattcggctctgttgttgtacagaaagatgcgcgagttgggtgtttcacacgattgttttacatttccaattgttaacaaggcggtcttgttggttgggggtgatgttagatatgcaggaatggttcattctgtggcaattcaaatgggttttggactggatgtgtattttggcaatactatgattgaggtgtatgtgaaatgcggcaatctcagttacgcccgtaagttgtttgatgaaatgcctgacacagatttagtttcttggacttcaatgatttccgggtatgtttctgaaggaaatgttgcctctgggtttagtttgttcagtgaaatgaggatggaactggaaccgaattcggtgacaatgttggtcatcttgcaagcgtgttgtggttttcaaacttcaatatacgggaggcaagttcatggatatgtgattaagaatggtttgctaagtaatggagctattcagaactcaatcttgagaatgtatgctaaattaggtaccattgaagaagtcgaagactttttcagggaacttgataggagggatgttgtttcctggaatatttgtatttcatcttatacttcgagaggggattttgtgaaagtaagagatttgttcaatgagatgcagggtggagtagcaccaagtattgagacattaactatagttctatcagcattgaccaaacatgggattctatcccaaggtgaaagcttgcatggtgtagcaataaaaagtggtcttcatgatgatgttttgcagacatctttgttggacttttatgccaaatgtggaaaattggaaagctcggataaattgtttagagaactccctgatagaaactgcattacttgcggtgcaatgatgtttggactcattcataatgggtatttcaatgaagcggttggagtatttagacagatgcaagctgcagatcatgatccaggggcagagatactaagaaaccttattgatgcatttgcaaatttaggtgctctgcagttgggaaaagcagttcatggctacataataaggaaatcattttgcggaactgaggaaggccatactcatcttgaaacctccatcttaaacatgtacataagatgtggtagcatatctacatctagagtgtgttttaatagaatgattttcaaagatgtggtggcatggacatcaatgattgagggttatgggagccatgggcttggttttgaagccgcgaaactctttgatctaatgacaagagaaggaataaagccaaatagtgtcaccttcttaagcttgttatctgcttatagccactctggtcttgtgactgaaggctgtgaagctttttattacatgaaatggaggtttggaattgaacccaatatagatcattacacttgtgttgttgatctcttgggcagatctggaaagctcaaagaggccttggctgtcattttgaaaatgttggcttttccagatagtaggatttggggtgctcttctttcaggatctagaatttacggcaacagagcacttgggcaatatgcagcccaaaggctcttggaattagaacctggtaatgttggatattttactctgttgagtaatacagaagccagtgttggacattgggatgaagtagaagagataaggaaagttatgaaagagaatgacctaaagaagaagccagggtggagctgcattgaggccaatggagtgattcatgggtttgtttctggaggtaattcacaccatcacattgaggagatttatgaagtactggggtggttaagtaggatgatgcaagggtttatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

665

Amino Acids

74.03

Weight (kDa)

6.25

Isoelectric Point (pI)

34.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012639)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 689
AccB1I GGYRCC 1 cut(s) 689
AccB7I CCANNNNNTGG 1 cut(s) 141
AccII CGCG 2 cut(s) 216, 1412
AciI CCGC 6 cut(s) 266, 387, 1047, 1094, 1239, 1410
AclWI GGATC 2 cut(s) 1127, 1696
AcsI RAATTY 3 cut(s) 538, 1177, 1695
AcuI CTGAAG 2 cut(s) 498, 1530
AfaI GTAC 4 cut(s) 203, 691, 1289, 1959
AfeI AGCGCT 1 cut(s) 97
AfiI CCNNNNNNNGG 2 cut(s) 141, 882
AflII CTTAAG 1 cut(s) 1468
AflIII ACRYGT 1 cut(s) 1284
AjnI CCWGG 4 cut(s) 746, 1135, 1753, 1867
AjuI GAANNNNNNNTTGG 2 cut(s) 1785, 1817
AloI GAACNNNNNNTCC 2 cut(s) 1191, 1223
AluBI AGCT 8 cut(s) 650, 906, 999, 1121, 1473, 1523, 1612, 1878
AluI AGCT 8 cut(s) 650, 906, 999, 1121, 1473, 1523, 1612, 1878
Alw21I GWGCWC 3 cut(s) 1189, 1678, 1714
Alw26I GTCTC 2 cut(s) 25, 839
AlwI GGATC 2 cut(s) 1127, 1696
Aor51HI AGCGCT 1 cut(s) 97
AoxI GGCC 3 cut(s) 1252, 1620, 1887
ApeKI GCWGC 4 cut(s) 93, 1121, 1727, 1878
ApoI RAATTY 3 cut(s) 538, 1177, 1695
Asp718I GGTACC 1 cut(s) 689
AspLEI GCGC 2 cut(s) 98, 216
AspS9I GGNCC 1 cut(s) 159
AsuC2I CCSGG 1 cut(s) 466
AsuHPI GGTGA 4 cut(s) 296, 556, 911, 1453
AvaII GGWCC 1 cut(s) 159
BanI GGYRCC 1 cut(s) 689
BbsI GAAGAC 2 cut(s) 714, 926
Bbv12I GWGCWC 3 cut(s) 1189, 1678, 1714
BbvI GCAGC 4 cut(s) 105, 1108, 1739, 1865
BccI CCATC 3 cut(s) 517, 1283, 1941
BceAI ACGGC 1 cut(s) 1717
BciT130I CCWGG 4 cut(s) 748, 1137, 1755, 1869
BcnI CCSGG 1 cut(s) 466
BcoDI GTCTC 2 cut(s) 25, 839
BfaI CTAG 3 cut(s) 17, 1317, 1692
BfmI CTRYAG 3 cut(s) 855, 1122, 1190
BfoI RGCGCY 1 cut(s) 99
BfrI CTTAAG 1 cut(s) 1468
BglII AGATCT 1 cut(s) 1601
BisI GCNGC 6 cut(s) 94, 388, 1122, 1410, 1728, 1879
BlsI GCNGC 6 cut(s) 95, 389, 1123, 1411, 1729, 1880
BmcAI AGTACT 1 cut(s) 1959
Bme1390I CCNGG 5 cut(s) 466, 748, 1137, 1755, 1869
Bme18I GGWCC 1 cut(s) 159
BmgT120I GGNCC 1 cut(s) 159
BmiI GGNNCC 4 cut(s) 161, 534, 691, 1388
BmrFI CCNGG 5 cut(s) 466, 748, 1137, 1755, 1869
BmrI ACTGGG 2 cut(s) 36, 1970
BmsI GCATC 5 cut(s) 201, 807, 1104, 1156, 1971
BmuI ACTGGG 2 cut(s) 36, 1970
BpiI GAAGAC 2 cut(s) 714, 926
BpmI CTGGAG 1 cut(s) 1938
BpuEI CTTGAG 1 cut(s) 688
BpuMI CCSGG 1 cut(s) 466
BsaBI GATNNNNATC 1 cut(s) 1131
BsaJI CCNNGG 6 cut(s) 88, 895, 1136, 1390, 1623, 1868
Bsc4I CCNNNNNNNGG 2 cut(s) 141, 882
Bse1I ACTGG 5 cut(s) 31, 345, 534, 1797, 1965
Bse3DI GCAATG 1 cut(s) 1059
Bse8I GATNNNNATC 1 cut(s) 1131
BseBI CCWGG 4 cut(s) 748, 1137, 1755, 1869
BseDI CCNNGG 6 cut(s) 88, 895, 1136, 1390, 1623, 1868
BseGI GGATG 5 cut(s) 349, 528, 742, 1819, 1983
BseJI GATNNNNATC 1 cut(s) 1131
BseLI CCNNNNNNNGG 2 cut(s) 141, 882
BseMI GCAATG 1 cut(s) 1059
BseMII CTCAG 2 cut(s) 409, 1236
BseNI ACTGG 5 cut(s) 31, 345, 534, 1797, 1965
BseRI GAGGAG 1 cut(s) 1958
BseXI GCAGC 4 cut(s) 105, 1108, 1739, 1865
Bsh1236I CGCG 2 cut(s) 216, 1412
BshFI GGCC 3 cut(s) 1254, 1622, 1889
BshNI GGYRCC 1 cut(s) 689
BsiHKAI GWGCWC 3 cut(s) 1189, 1678, 1714
BsiSI CCGG 1 cut(s) 465
BslI CCNNNNNNNGG 2 cut(s) 141, 882
BsmAI GTCTC 2 cut(s) 25, 839
BsnI GGCC 3 cut(s) 1254, 1622, 1889
Bsp1286I GDGCHC 3 cut(s) 1189, 1678, 1714
Bsp1407I TGTACA 2 cut(s) 201, 1287
Bsp143I GATC 7 cut(s) 1126, 1132, 1423, 1567, 1588, 1601, 1688
Bsp19I CCATGG 1 cut(s) 1390
BspACI CCGC 6 cut(s) 266, 387, 1047, 1094, 1239, 1410
BspANI GGCC 3 cut(s) 1254, 1622, 1889
BspCNI CTCAG 2 cut(s) 408, 1237
BspFNI CGCG 2 cut(s) 216, 1412
BspHI TCATGA 2 cut(s) 937, 1129
BspLI GGNNCC 4 cut(s) 161, 534, 691, 1388
BspMAI CTGCAG 2 cut(s) 1126, 1194
BspPI GGATC 2 cut(s) 1127, 1696
BspQI GCTCTTC 1 cut(s) 1683
BspT107I GGYRCC 1 cut(s) 689
BspTI CTTAAG 1 cut(s) 1468
BsrDI GCAATG 1 cut(s) 1059
BsrGI TGTACA 2 cut(s) 201, 1287
BsrI ACTGG 5 cut(s) 31, 345, 534, 1797, 1965
BssECI CCNNGG 6 cut(s) 88, 895, 1136, 1390, 1623, 1868
BssMI GATC 7 cut(s) 1126, 1132, 1423, 1567, 1588, 1601, 1688
BssT1I CCWWGG 4 cut(s) 88, 895, 1390, 1623
Bst2UI CCWGG 4 cut(s) 748, 1137, 1755, 1869
Bst6I CTCTTC 2 cut(s) 1683, 1818
BstAFI CTTAAG 1 cut(s) 1468
BstAPI GCANNNNNTGC 1 cut(s) 1044
BstAUI TGTACA 2 cut(s) 201, 1287
BstC8I GCNNGC 4 cut(s) 6, 567, 908, 1119
BstDEI CTNAG 4 cut(s) 395, 638, 1151, 1245
BstDSI CCRYGG 1 cut(s) 1390
BstF5I GGATG 5 cut(s) 349, 528, 742, 1819, 1983
BstFNI CGCG 2 cut(s) 216, 1412
BstH2I RGCGCY 1 cut(s) 99
BstHHI GCGC 2 cut(s) 98, 216
BstKTI GATC 7 cut(s) 1129, 1135, 1426, 1570, 1591, 1604, 1691
BstMAI GTCTC 2 cut(s) 25, 839
BstMBI GATC 7 cut(s) 1126, 1132, 1423, 1567, 1588, 1601, 1688
BstMWI GCNNNNNNNGC 1 cut(s) 1044
BstNI CCWGG 4 cut(s) 748, 1137, 1755, 1869
BstNSI RCATGY 2 cut(s) 8, 1288
BstSCI CCNGG 5 cut(s) 464, 746, 1135, 1753, 1867
BstSFI CTRYAG 3 cut(s) 855, 1122, 1190
BstUI CGCG 2 cut(s) 216, 1412
BstV1I GCAGC 4 cut(s) 105, 1108, 1739, 1865
BstV2I GAAGAC 2 cut(s) 714, 926
BstX2I RGATCY 2 cut(s) 1601, 1688
BstXI CCANNNNNNTGG 1 cut(s) 1397
BstYI RGATCY 2 cut(s) 1601, 1688
BsuRI GGCC 3 cut(s) 1254, 1622, 1889
BtgI CCRYGG 1 cut(s) 1390
BtsCI GGATG 5 cut(s) 349, 528, 742, 1819, 1983
BtsIMutI CAGTG 2 cut(s) 517, 1804
Cac8I GCNNGC 4 cut(s) 6, 567, 908, 1119
CciI TCATGA 2 cut(s) 937, 1129
CfoI GCGC 2 cut(s) 98, 216
Cfr13I GGNCC 1 cut(s) 159
CsiI ACCWGGT 1 cut(s) 1753
Csp6I GTAC 4 cut(s) 202, 690, 1288, 1958
CviQI GTAC 4 cut(s) 202, 690, 1288, 1958
DdeI CTNAG 4 cut(s) 395, 638, 1151, 1245
DpnI GATC 7 cut(s) 1128, 1134, 1425, 1569, 1590, 1603, 1690
DpnII GATC 7 cut(s) 1126, 1132, 1423, 1567, 1588, 1601, 1688
Eam1104I CTCTTC 2 cut(s) 1683, 1818
EarI CTCTTC 2 cut(s) 1683, 1818
Eco130I CCWWGG 4 cut(s) 88, 895, 1390, 1623
Eco147I AGGCCT 1 cut(s) 1622
Eco47I GGWCC 1 cut(s) 159
Eco47III AGCGCT 1 cut(s) 97
Eco57I CTGAAG 2 cut(s) 498, 1530
EcoO109I RGGNCCY 1 cut(s) 159
EcoRI GAATTC 1 cut(s) 538
EcoRII CCWGG 4 cut(s) 746, 1135, 1753, 1867
EcoT14I CCWWGG 4 cut(s) 88, 895, 1390, 1623
EcoT22I ATGCAT 2 cut(s) 6, 1171
ErhI CCWWGG 4 cut(s) 88, 895, 1390, 1623
FalI AAGNNNNNCTT 2 cut(s) 254, 286
Fnu4HI GCNGC 6 cut(s) 94, 388, 1122, 1410, 1728, 1879
FokI GGATG 5 cut(s) 356, 535, 749, 1826, 1990
Fsp4HI GCNGC 6 cut(s) 94, 388, 1122, 1410, 1728, 1879
FspBI CTAG 3 cut(s) 17, 1317, 1692
GlaI GCGC 2 cut(s) 97, 215
GluI GCNGC 6 cut(s) 94, 388, 1122, 1410, 1728, 1879
GsuI CTGGAG 1 cut(s) 1938
HaeII RGCGCY 1 cut(s) 99
HaeIII GGCC 3 cut(s) 1254, 1622, 1889
HapII CCGG 1 cut(s) 465
HhaI GCGC 2 cut(s) 98, 216
Hin6I GCGC 2 cut(s) 96, 214
HinP1I GCGC 2 cut(s) 96, 214
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HindIII AAGCTT 3 cut(s) 904, 1471, 1521
HinfI GANTC 6 cut(s) 145, 170, 185, 886, 1065, 1900
HpaI GTTAAC 1 cut(s) 259
HpaII CCGG 1 cut(s) 465
HphI GGTGA 4 cut(s) 296, 556, 911, 1453
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 3 cut(s) 478, 657, 1003
Hpy8I GTNNAC 1 cut(s) 259
HpyAV CCTTC 5 cut(s) 473, 1244, 1433, 1474, 1505
HpyF10VI GCNNNNNNNGC 1 cut(s) 1044
HpyF3I CTNAG 4 cut(s) 395, 638, 1151, 1245
HspAI GCGC 2 cut(s) 96, 214
KpnI GGTACC 1 cut(s) 693
KspAI GTTAAC 1 cut(s) 259
Kzo9I GATC 7 cut(s) 1126, 1132, 1423, 1567, 1588, 1601, 1688
LguI GCTCTTC 1 cut(s) 1683
LmnI GCTCC 3 cut(s) 647, 1386, 1875
Lsp1109I GCAGC 4 cut(s) 105, 1108, 1739, 1865
LweI GCATC 5 cut(s) 201, 807, 1104, 1156, 1971
MabI ACCWGGT 1 cut(s) 1753
MaeI CTAG 3 cut(s) 17, 1317, 1692
MaeIII GTNAC 4 cut(s) 398, 544, 1459, 1504
MalI GATC 7 cut(s) 1128, 1134, 1425, 1569, 1590, 1603, 1690
MboI GATC 7 cut(s) 1126, 1132, 1423, 1567, 1588, 1601, 1688
MboII GAAGA 6 cut(s) 710, 719, 926, 1670, 1835, 1873
MfeI CAATTG 1 cut(s) 252
MflI RGATCY 2 cut(s) 1601, 1688
MhlI GDGCHC 3 cut(s) 1189, 1678, 1714
MlyI GAGTC 1 cut(s) 1059
MmeI TCCRAC 4 cut(s) 945, 1078, 1744, 1783
Mph1103I ATGCAT 2 cut(s) 6, 1171
MseI TTAA 7 cut(s) 258, 624, 851, 1280, 1329, 1469, 1970
MslI CAYNNNNRTG 3 cut(s) 615, 942, 1812
MspCI CTTAAG 1 cut(s) 1468
MspI CCGG 1 cut(s) 465
MspR9I CCNGG 5 cut(s) 466, 748, 1137, 1755, 1869
MunI CAATTG 1 cut(s) 252
MvaI CCWGG 4 cut(s) 748, 1137, 1755, 1869
MvnI CGCG 2 cut(s) 216, 1412
MwoI GCNNNNNNNGC 1 cut(s) 1044
NciI CCSGG 1 cut(s) 466
NcoI CCATGG 1 cut(s) 1390
NdeII GATC 7 cut(s) 1126, 1132, 1423, 1567, 1588, 1601, 1688
NlaIV GGNNCC 4 cut(s) 161, 534, 691, 1388
NmuCI GTSAC 3 cut(s) 544, 1459, 1504
NsiI ATGCAT 2 cut(s) 6, 1171
NspI RCATGY 2 cut(s) 8, 1288
PaeI GCATGC 1 cut(s) 8
PagI TCATGA 2 cut(s) 937, 1129
PceI AGGCCT 1 cut(s) 1622
PciI ACATGT 1 cut(s) 1284
PciSI GCTCTTC 1 cut(s) 1683
PfeI GAWTC 5 cut(s) 145, 170, 185, 886, 1900
PflMI CCANNNNNTGG 1 cut(s) 141
PfoI TCCNGGA 1 cut(s) 746
PkrI GCNGC 6 cut(s) 95, 389, 1123, 1411, 1729, 1880
PleI GAGTC 1 cut(s) 1059
PpsI GAGTC 1 cut(s) 1059
PpuMI RGGWCCY 1 cut(s) 159
PscI ACATGT 1 cut(s) 1284
Psp5II RGGWCCY 1 cut(s) 159
Psp6I CCWGG 4 cut(s) 746, 1135, 1753, 1867
PspGI CCWGG 4 cut(s) 746, 1135, 1753, 1867
PspN4I GGNNCC 4 cut(s) 161, 534, 691, 1388
PspPI GGNCC 1 cut(s) 159
PspPPI RGGWCCY 1 cut(s) 159
PsrI GAACNNNNNNTAC 2 cut(s) 62, 94
PstI CTGCAG 2 cut(s) 1126, 1194
PsuI RGATCY 2 cut(s) 1601, 1688
RsaI GTAC 4 cut(s) 203, 691, 1289, 1959
RsaNI GTAC 4 cut(s) 202, 690, 1288, 1958
RseI CAYNNNNRTG 3 cut(s) 615, 942, 1812
SapI GCTCTTC 1 cut(s) 1683
SaqAI TTAA 7 cut(s) 258, 624, 851, 1280, 1329, 1469, 1970
SatI GCNGC 6 cut(s) 94, 388, 1122, 1410, 1728, 1879
Sau3AI GATC 7 cut(s) 1126, 1132, 1423, 1567, 1588, 1601, 1688
Sau96I GGNCC 1 cut(s) 159
ScaI AGTACT 1 cut(s) 1959
SchI GAGTC 1 cut(s) 1059
ScrFI CCNGG 5 cut(s) 466, 748, 1137, 1755, 1869
SduI GDGCHC 3 cut(s) 1189, 1678, 1714
SexAI ACCWGGT 1 cut(s) 1753
SfaNI GCATC 5 cut(s) 201, 807, 1104, 1156, 1971
SfcI CTRYAG 3 cut(s) 855, 1122, 1190
SinI GGWCC 1 cut(s) 159
SmiMI CAYNNNNRTG 3 cut(s) 615, 942, 1812
SmlI CTYRAG 2 cut(s) 667, 1468
SmoI CTYRAG 2 cut(s) 667, 1468
SphI GCATGC 1 cut(s) 8
SseBI AGGCCT 1 cut(s) 1622
SsiI CCGC 6 cut(s) 266, 387, 1047, 1094, 1239, 1410
SspI AATATT 1 cut(s) 754
SspMI CTAG 3 cut(s) 17, 1317, 1692
StuI AGGCCT 1 cut(s) 1622
StyD4I CCNGG 5 cut(s) 464, 746, 1135, 1753, 1867
StyI CCWWGG 4 cut(s) 88, 895, 1390, 1623
TaqI TCGA 2 cut(s) 705, 776
TatI WGTACW 3 cut(s) 201, 1287, 1957
TauI GCSGC 2 cut(s) 390, 1412
TfiI GAWTC 5 cut(s) 145, 170, 185, 886, 1900
Tru1I TTAA 7 cut(s) 258, 624, 851, 1280, 1329, 1469, 1970
Tru9I TTAA 7 cut(s) 258, 624, 851, 1280, 1329, 1469, 1970
TscAI CASTG 2 cut(s) 517, 1804
TseFI GTSAC 3 cut(s) 544, 1459, 1504
TseI GCWGC 4 cut(s) 93, 1121, 1727, 1878
Tsp45I GTSAC 3 cut(s) 544, 1459, 1504
TspRI CASTG 2 cut(s) 517, 1804
Van91I CCANNNNNTGG 1 cut(s) 141
Vha464I CTTAAG 1 cut(s) 1468
VpaK11BI GGWCC 1 cut(s) 159
XapI RAATTY 3 cut(s) 538, 1177, 1695
XbaI TCTAGA 2 cut(s) 1316, 1691
XceI RCATGY 2 cut(s) 8, 1288
XspI CTAG 3 cut(s) 17, 1317, 1692
ZrmI AGTACT 1 cut(s) 1959
Zsp2I ATGCAT 2 cut(s) 6, 1171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.