Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g24950 |
| malus_domestica | MD05G1013600.v1.1 MD14G1083400.v1.1 |
| prunus_persica | Prupe.7G047100_v2.0.a1 |
| pyrus_communis | pycom14g07240 |
| rosa_chinensis | RchiOBHm_Chr2g0124611 |
| rosa_laevigata | RLG00000018808 |
| rosa_multiflora | Rmu_sc0005597.1_g000009 |
| rosa_roxburghii | Rroxscaffold_2G00119840 |
| rosa_rugosa | Rorug02G0251600 Rorug02G0251700 |
| rosa_samantha | Rh2AG310300 Rh2AG310400 Rh2BG318800 Rh2CG297200 Rh2CG302100 Rh2DG334000 |
| rosa_wichuraiana | Rw0G009400 Rw2G025100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 566 |
| Acc65I | GGTACC | 1 cut(s) | 140 |
| AccB1I | GGYRCC | 1 cut(s) | 140 |
| AciI | CCGC | 4 cut(s) | 498, 545, 690, 861 |
| AclWI | GGATC | 2 cut(s) | 578, 1147 |
| AcsI | RAATTY | 2 cut(s) | 628, 1146 |
| AcuI | CTGAAG | 2 cut(s) | 662, 981 |
| AfaI | GTAC | 3 cut(s) | 142, 740, 1410 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 333 |
| AflII | CTTAAG | 1 cut(s) | 919 |
| AflIII | ACRYGT | 1 cut(s) | 735 |
| AjnI | CCWGG | 4 cut(s) | 197, 586, 1204, 1318 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1236, 1268 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 642, 674 |
| AluBI | AGCT | 8 cut(s) | 101, 357, 450, 572, 924, 974, 1063, 1329 |
| AluI | AGCT | 8 cut(s) | 101, 357, 450, 572, 924, 974, 1063, 1329 |
| Alw21I | GWGCWC | 3 cut(s) | 640, 1129, 1165 |
| Alw26I | GTCTC | 1 cut(s) | 290 |
| AlwI | GGATC | 2 cut(s) | 578, 1147 |
| AoxI | GGCC | 3 cut(s) | 703, 1071, 1338 |
| ApeKI | GCWGC | 3 cut(s) | 572, 1178, 1329 |
| ApoI | RAATTY | 2 cut(s) | 628, 1146 |
| Asp718I | GGTACC | 1 cut(s) | 140 |
| AsuHPI | GGTGA | 2 cut(s) | 362, 904 |
| BanI | GGYRCC | 1 cut(s) | 140 |
| BbsI | GAAGAC | 2 cut(s) | 165, 377 |
| Bbv12I | GWGCWC | 3 cut(s) | 640, 1129, 1165 |
| BbvI | GCAGC | 3 cut(s) | 559, 1190, 1316 |
| BccI | CCATC | 2 cut(s) | 734, 1392 |
| BceAI | ACGGC | 1 cut(s) | 1168 |
| BciT130I | CCWGG | 4 cut(s) | 199, 588, 1206, 1320 |
| BcoDI | GTCTC | 1 cut(s) | 290 |
| BfaI | CTAG | 2 cut(s) | 768, 1143 |
| BfmI | CTRYAG | 2 cut(s) | 306, 573 |
| BfrI | CTTAAG | 1 cut(s) | 919 |
| BfuAI | ACCTGC | 1 cut(s) | 566 |
| BglII | AGATCT | 1 cut(s) | 1052 |
| BisI | GCNGC | 4 cut(s) | 573, 861, 1179, 1330 |
| BlsI | GCNGC | 4 cut(s) | 574, 862, 1180, 1331 |
| BmcAI | AGTACT | 1 cut(s) | 1410 |
| Bme1390I | CCNGG | 4 cut(s) | 199, 588, 1206, 1320 |
| BmiI | GGNNCC | 2 cut(s) | 142, 839 |
| BmrFI | CCNGG | 4 cut(s) | 199, 588, 1206, 1320 |
| BmrI | ACTGGG | 1 cut(s) | 1421 |
| BmsI | GCATC | 4 cut(s) | 258, 555, 607, 1422 |
| BmuI | ACTGGG | 1 cut(s) | 1421 |
| BpiI | GAAGAC | 2 cut(s) | 165, 377 |
| BpmI | CTGGAG | 1 cut(s) | 1389 |
| BpuEI | CTTGAG | 1 cut(s) | 139 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1017 |
| BsaJI | CCNNGG | 5 cut(s) | 346, 587, 841, 1074, 1319 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 333 |
| Bse1I | ACTGG | 2 cut(s) | 1248, 1416 |
| Bse3DI | GCAATG | 1 cut(s) | 510 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1017 |
| BseBI | CCWGG | 4 cut(s) | 199, 588, 1206, 1320 |
| BseDI | CCNNGG | 5 cut(s) | 346, 587, 841, 1074, 1319 |
| BseGI | GGATG | 3 cut(s) | 193, 1270, 1434 |
| BseJI | GATNNNNATC | 1 cut(s) | 1017 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 333 |
| BseMI | GCAATG | 1 cut(s) | 510 |
| BseMII | CTCAG | 1 cut(s) | 687 |
| BseNI | ACTGG | 2 cut(s) | 1248, 1416 |
| BseRI | GAGGAG | 1 cut(s) | 1409 |
| BseXI | GCAGC | 3 cut(s) | 559, 1190, 1316 |
| BshFI | GGCC | 3 cut(s) | 705, 1073, 1340 |
| BshNI | GGYRCC | 1 cut(s) | 140 |
| BsiHKAI | GWGCWC | 3 cut(s) | 640, 1129, 1165 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 333 |
| BsmAI | GTCTC | 1 cut(s) | 290 |
| BsnI | GGCC | 3 cut(s) | 705, 1073, 1340 |
| Bsp1286I | GDGCHC | 3 cut(s) | 640, 1129, 1165 |
| Bsp1407I | TGTACA | 1 cut(s) | 738 |
| Bsp143I | GATC | 6 cut(s) | 583, 874, 1018, 1039, 1052, 1139 |
| Bsp19I | CCATGG | 1 cut(s) | 841 |
| BspACI | CCGC | 4 cut(s) | 498, 545, 690, 861 |
| BspANI | GGCC | 3 cut(s) | 705, 1073, 1340 |
| BspCNI | CTCAG | 1 cut(s) | 688 |
| BspHI | TCATGA | 1 cut(s) | 388 |
| BspLI | GGNNCC | 2 cut(s) | 142, 839 |
| BspMAI | CTGCAG | 1 cut(s) | 577 |
| BspMI | ACCTGC | 1 cut(s) | 566 |
| BspPI | GGATC | 2 cut(s) | 578, 1147 |
| BspQI | GCTCTTC | 1 cut(s) | 1134 |
| BspT107I | GGYRCC | 1 cut(s) | 140 |
| BspTI | CTTAAG | 1 cut(s) | 919 |
| BsrDI | GCAATG | 1 cut(s) | 510 |
| BsrGI | TGTACA | 1 cut(s) | 738 |
| BsrI | ACTGG | 2 cut(s) | 1248, 1416 |
| BssECI | CCNNGG | 5 cut(s) | 346, 587, 841, 1074, 1319 |
| BssMI | GATC | 6 cut(s) | 583, 874, 1018, 1039, 1052, 1139 |
| BssT1I | CCWWGG | 3 cut(s) | 346, 841, 1074 |
| Bst2UI | CCWGG | 4 cut(s) | 199, 588, 1206, 1320 |
| Bst6I | CTCTTC | 2 cut(s) | 1134, 1269 |
| BstAFI | CTTAAG | 1 cut(s) | 919 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 495 |
| BstAUI | TGTACA | 1 cut(s) | 738 |
| BstC8I | GCNNGC | 3 cut(s) | 18, 359, 570 |
| BstDEI | CTNAG | 3 cut(s) | 89, 602, 696 |
| BstDSI | CCRYGG | 1 cut(s) | 841 |
| BstF5I | GGATG | 3 cut(s) | 193, 1270, 1434 |
| BstKTI | GATC | 6 cut(s) | 586, 877, 1021, 1042, 1055, 1142 |
| BstMAI | GTCTC | 1 cut(s) | 290 |
| BstMBI | GATC | 6 cut(s) | 583, 874, 1018, 1039, 1052, 1139 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 495 |
| BstNI | CCWGG | 4 cut(s) | 199, 588, 1206, 1320 |
| BstNSI | RCATGY | 1 cut(s) | 739 |
| BstSCI | CCNGG | 4 cut(s) | 197, 586, 1204, 1318 |
| BstSFI | CTRYAG | 2 cut(s) | 306, 573 |
| BstV1I | GCAGC | 3 cut(s) | 559, 1190, 1316 |
| BstV2I | GAAGAC | 2 cut(s) | 165, 377 |
| BstX2I | RGATCY | 2 cut(s) | 1052, 1139 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 848 |
| BstYI | RGATCY | 2 cut(s) | 1052, 1139 |
| BsuRI | GGCC | 3 cut(s) | 705, 1073, 1340 |
| BtgI | CCRYGG | 1 cut(s) | 841 |
| BtsCI | GGATG | 3 cut(s) | 193, 1270, 1434 |
| BtsIMutI | CAGTG | 1 cut(s) | 1255 |
| BveI | ACCTGC | 1 cut(s) | 566 |
| Cac8I | GCNNGC | 3 cut(s) | 18, 359, 570 |
| CciI | TCATGA | 1 cut(s) | 388 |
| CsiI | ACCWGGT | 1 cut(s) | 1204 |
| Csp6I | GTAC | 3 cut(s) | 141, 739, 1409 |
| CviQI | GTAC | 3 cut(s) | 141, 739, 1409 |
| DdeI | CTNAG | 3 cut(s) | 89, 602, 696 |
| DpnI | GATC | 6 cut(s) | 585, 876, 1020, 1041, 1054, 1141 |
| DpnII | GATC | 6 cut(s) | 583, 874, 1018, 1039, 1052, 1139 |
| Eam1104I | CTCTTC | 2 cut(s) | 1134, 1269 |
| EarI | CTCTTC | 2 cut(s) | 1134, 1269 |
| Eco130I | CCWWGG | 3 cut(s) | 346, 841, 1074 |
| Eco147I | AGGCCT | 1 cut(s) | 1073 |
| Eco57I | CTGAAG | 2 cut(s) | 662, 981 |
| EcoRII | CCWGG | 4 cut(s) | 197, 586, 1204, 1318 |
| EcoT14I | CCWWGG | 3 cut(s) | 346, 841, 1074 |
| EcoT22I | ATGCAT | 1 cut(s) | 622 |
| ErhI | CCWWGG | 3 cut(s) | 346, 841, 1074 |
| Fnu4HI | GCNGC | 4 cut(s) | 573, 861, 1179, 1330 |
| FokI | GGATG | 3 cut(s) | 200, 1277, 1441 |
| Fsp4HI | GCNGC | 4 cut(s) | 573, 861, 1179, 1330 |
| FspBI | CTAG | 2 cut(s) | 768, 1143 |
| GluI | GCNGC | 4 cut(s) | 573, 861, 1179, 1330 |
| GsuI | CTGGAG | 1 cut(s) | 1389 |
| HaeIII | GGCC | 3 cut(s) | 705, 1073, 1340 |
| HindIII | AAGCTT | 3 cut(s) | 355, 922, 972 |
| HinfI | GANTC | 3 cut(s) | 337, 516, 1351 |
| HphI | GGTGA | 2 cut(s) | 362, 904 |
| Hpy188I | TCNGA | 4 cut(s) | 108, 170, 454, 642 |
| HpyAV | CCTTC | 4 cut(s) | 695, 884, 925, 956 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 495 |
| HpyF3I | CTNAG | 3 cut(s) | 89, 602, 696 |
| KpnI | GGTACC | 1 cut(s) | 144 |
| Kzo9I | GATC | 6 cut(s) | 583, 874, 1018, 1039, 1052, 1139 |
| LguI | GCTCTTC | 1 cut(s) | 1134 |
| LmnI | GCTCC | 3 cut(s) | 98, 837, 1326 |
| Lsp1109I | GCAGC | 3 cut(s) | 559, 1190, 1316 |
| LweI | GCATC | 4 cut(s) | 258, 555, 607, 1422 |
| MabI | ACCWGGT | 1 cut(s) | 1204 |
| MaeI | CTAG | 2 cut(s) | 768, 1143 |
| MaeIII | GTNAC | 2 cut(s) | 910, 955 |
| MalI | GATC | 6 cut(s) | 585, 876, 1020, 1041, 1054, 1141 |
| MboI | GATC | 6 cut(s) | 583, 874, 1018, 1039, 1052, 1139 |
| MboII | GAAGA | 6 cut(s) | 161, 170, 377, 1121, 1286, 1324 |
| MflI | RGATCY | 2 cut(s) | 1052, 1139 |
| MhlI | GDGCHC | 3 cut(s) | 640, 1129, 1165 |
| MluCI | AATT | 8 cut(s) | 134, 440, 458, 628, 1002, 1146, 1196, 1375 |
| MlyI | GAGTC | 1 cut(s) | 510 |
| MmeI | TCCRAC | 4 cut(s) | 396, 529, 1195, 1234 |
| Mph1103I | ATGCAT | 1 cut(s) | 622 |
| MseI | TTAA | 6 cut(s) | 75, 302, 731, 780, 920, 1421 |
| MslI | CAYNNNNRTG | 2 cut(s) | 393, 1263 |
| MspCI | CTTAAG | 1 cut(s) | 919 |
| MspR9I | CCNGG | 4 cut(s) | 199, 588, 1206, 1320 |
| MvaI | CCWGG | 4 cut(s) | 199, 588, 1206, 1320 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 495 |
| NcoI | CCATGG | 1 cut(s) | 841 |
| NdeII | GATC | 6 cut(s) | 583, 874, 1018, 1039, 1052, 1139 |
| NlaIV | GGNNCC | 2 cut(s) | 142, 839 |
| NmuCI | GTSAC | 2 cut(s) | 910, 955 |
| NsiI | ATGCAT | 1 cut(s) | 622 |
| NspI | RCATGY | 1 cut(s) | 739 |
| PagI | TCATGA | 1 cut(s) | 388 |
| PceI | AGGCCT | 1 cut(s) | 1073 |
| PciI | ACATGT | 1 cut(s) | 735 |
| PciSI | GCTCTTC | 1 cut(s) | 1134 |
| PfeI | GAWTC | 2 cut(s) | 337, 1351 |
| PfoI | TCCNGGA | 1 cut(s) | 197 |
| PkrI | GCNGC | 4 cut(s) | 574, 862, 1180, 1331 |
| PleI | GAGTC | 1 cut(s) | 510 |
| PpsI | GAGTC | 1 cut(s) | 510 |
| PscI | ACATGT | 1 cut(s) | 735 |
| Psp6I | CCWGG | 4 cut(s) | 197, 586, 1204, 1318 |
| PspGI | CCWGG | 4 cut(s) | 197, 586, 1204, 1318 |
| PspN4I | GGNNCC | 2 cut(s) | 142, 839 |
| PstI | CTGCAG | 1 cut(s) | 577 |
| PsuI | RGATCY | 2 cut(s) | 1052, 1139 |
| RsaI | GTAC | 3 cut(s) | 142, 740, 1410 |
| RsaNI | GTAC | 3 cut(s) | 141, 739, 1409 |
| RseI | CAYNNNNRTG | 2 cut(s) | 393, 1263 |
| SapI | GCTCTTC | 1 cut(s) | 1134 |
| SaqAI | TTAA | 6 cut(s) | 75, 302, 731, 780, 920, 1421 |
| SatI | GCNGC | 4 cut(s) | 573, 861, 1179, 1330 |
| Sau3AI | GATC | 6 cut(s) | 583, 874, 1018, 1039, 1052, 1139 |
| ScaI | AGTACT | 1 cut(s) | 1410 |
| SchI | GAGTC | 1 cut(s) | 510 |
| ScrFI | CCNGG | 4 cut(s) | 199, 588, 1206, 1320 |
| SduI | GDGCHC | 3 cut(s) | 640, 1129, 1165 |
| SexAI | ACCWGGT | 1 cut(s) | 1204 |
| SfaNI | GCATC | 4 cut(s) | 258, 555, 607, 1422 |
| SfcI | CTRYAG | 2 cut(s) | 306, 573 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 393, 1263 |
| SmlI | CTYRAG | 2 cut(s) | 118, 919 |
| SmoI | CTYRAG | 2 cut(s) | 118, 919 |
| Sse9I | AATT | 8 cut(s) | 134, 440, 458, 628, 1002, 1146, 1196, 1375 |
| SseBI | AGGCCT | 1 cut(s) | 1073 |
| SsiI | CCGC | 4 cut(s) | 498, 545, 690, 861 |
| SspI | AATATT | 1 cut(s) | 205 |
| SspMI | CTAG | 2 cut(s) | 768, 1143 |
| StuI | AGGCCT | 1 cut(s) | 1073 |
| StyD4I | CCNGG | 4 cut(s) | 197, 586, 1204, 1318 |
| StyI | CCWWGG | 3 cut(s) | 346, 841, 1074 |
| TaqI | TCGA | 2 cut(s) | 156, 227 |
| TasI | AATT | 8 cut(s) | 134, 440, 458, 628, 1002, 1146, 1196, 1375 |
| TatI | WGTACW | 2 cut(s) | 738, 1408 |
| TauI | GCSGC | 1 cut(s) | 863 |
| TfiI | GAWTC | 2 cut(s) | 337, 1351 |
| Tru1I | TTAA | 6 cut(s) | 75, 302, 731, 780, 920, 1421 |
| Tru9I | TTAA | 6 cut(s) | 75, 302, 731, 780, 920, 1421 |
| TscAI | CASTG | 1 cut(s) | 1255 |
| TseFI | GTSAC | 2 cut(s) | 910, 955 |
| TseI | GCWGC | 3 cut(s) | 572, 1178, 1329 |
| Tsp45I | GTSAC | 2 cut(s) | 910, 955 |
| TspRI | CASTG | 1 cut(s) | 1255 |
| Vha464I | CTTAAG | 1 cut(s) | 919 |
| XapI | RAATTY | 2 cut(s) | 628, 1146 |
| XbaI | TCTAGA | 2 cut(s) | 767, 1142 |
| XceI | RCATGY | 1 cut(s) | 739 |
| XspI | CTAG | 2 cut(s) | 768, 1143 |
| ZrmI | AGTACT | 1 cut(s) | 1410 |
| Zsp2I | ATGCAT | 1 cut(s) | 622 |