Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g24950 |
| malus_domestica | MD05G1013600.v1.1 MD14G1083400.v1.1 |
| prunus_persica | Prupe.7G047100_v2.0.a1 |
| pyrus_communis | pycom14g07240 |
| rosa_chinensis | RchiOBHm_Chr2g0124611 |
| rosa_laevigata | RLG00000018808 |
| rosa_multiflora | Rmu_sc0005597.1_g000009 |
| rosa_roxburghii | Rroxscaffold_2G00119840 |
| rosa_rugosa | Rorug02G0251600 Rorug02G0251700 |
| rosa_samantha | Rh2AG310300 Rh2AG310400 Rh2BG318800 Rh2CG297200 Rh2CG302100 Rh2DG334000 |
| rosa_wichuraiana | Rw0G009400 Rw2G025100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 443 |
| Acc65I | GGTACC | 1 cut(s) | 17 |
| AccB1I | GGYRCC | 1 cut(s) | 17 |
| AccI | GTMKAC | 1 cut(s) | 1352 |
| AciI | CCGC | 3 cut(s) | 375, 422, 567 |
| AclWI | GGATC | 2 cut(s) | 455, 1024 |
| AcsI | RAATTY | 3 cut(s) | 505, 1023, 1361 |
| AcuI | CTGAAG | 2 cut(s) | 539, 858 |
| AfaI | GTAC | 2 cut(s) | 19, 617 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 210, 224 |
| AflII | CTTAAG | 1 cut(s) | 796 |
| AflIII | ACRYGT | 1 cut(s) | 612 |
| AjnI | CCWGG | 4 cut(s) | 74, 463, 1081, 1195 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1113, 1145 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 519, 551 |
| AluBI | AGCT | 7 cut(s) | 234, 449, 737, 801, 851, 940, 1206 |
| AluI | AGCT | 7 cut(s) | 234, 449, 737, 801, 851, 940, 1206 |
| Alw21I | GWGCWC | 3 cut(s) | 517, 1006, 1042 |
| Alw26I | GTCTC | 2 cut(s) | 167, 1339 |
| AlwI | GGATC | 2 cut(s) | 455, 1024 |
| AoxI | GGCC | 4 cut(s) | 580, 948, 1215, 1397 |
| ApeKI | GCWGC | 4 cut(s) | 449, 737, 1055, 1206 |
| ApoI | RAATTY | 3 cut(s) | 505, 1023, 1361 |
| Asp718I | GGTACC | 1 cut(s) | 17 |
| AsuHPI | GGTGA | 3 cut(s) | 239, 781, 1294 |
| BanI | GGYRCC | 1 cut(s) | 17 |
| BbsI | GAAGAC | 2 cut(s) | 42, 254 |
| Bbv12I | GWGCWC | 3 cut(s) | 517, 1006, 1042 |
| BbvI | GCAGC | 4 cut(s) | 436, 724, 1067, 1193 |
| BccI | CCATC | 3 cut(s) | 226, 611, 1273 |
| BceAI | ACGGC | 1 cut(s) | 1045 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1348, 1382 |
| BciT130I | CCWGG | 4 cut(s) | 76, 465, 1083, 1197 |
| BcoDI | GTCTC | 2 cut(s) | 167, 1339 |
| BfaI | CTAG | 3 cut(s) | 645, 1020, 1356 |
| BfmI | CTRYAG | 2 cut(s) | 183, 450 |
| BfrI | CTTAAG | 1 cut(s) | 796 |
| BfuAI | ACCTGC | 1 cut(s) | 443 |
| BglII | AGATCT | 1 cut(s) | 929 |
| BisI | GCNGC | 4 cut(s) | 450, 738, 1056, 1207 |
| BlsI | GCNGC | 4 cut(s) | 451, 739, 1057, 1208 |
| Bme1390I | CCNGG | 4 cut(s) | 76, 465, 1083, 1197 |
| BmiI | GGNNCC | 2 cut(s) | 19, 716 |
| BmrFI | CCNGG | 4 cut(s) | 76, 465, 1083, 1197 |
| BmsI | GCATC | 3 cut(s) | 135, 432, 484 |
| BpiI | GAAGAC | 2 cut(s) | 42, 254 |
| BpmI | CTGGAG | 1 cut(s) | 1266 |
| BsaBI | GATNNNNATC | 1 cut(s) | 894 |
| BsaI | GGTCTC | 1 cut(s) | 1339 |
| BsaJI | CCNNGG | 5 cut(s) | 223, 464, 718, 951, 1196 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 210, 224 |
| Bse1I | ACTGG | 1 cut(s) | 1125 |
| Bse3DI | GCAATG | 1 cut(s) | 387 |
| Bse8I | GATNNNNATC | 1 cut(s) | 894 |
| BseBI | CCWGG | 4 cut(s) | 76, 465, 1083, 1197 |
| BseDI | CCNNGG | 5 cut(s) | 223, 464, 718, 951, 1196 |
| BseGI | GGATG | 4 cut(s) | 70, 218, 1147, 1377 |
| BseJI | GATNNNNATC | 1 cut(s) | 894 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 210, 224 |
| BseMI | GCAATG | 1 cut(s) | 387 |
| BseMII | CTCAG | 2 cut(s) | 564, 1355 |
| BseNI | ACTGG | 1 cut(s) | 1125 |
| BseXI | GCAGC | 4 cut(s) | 436, 724, 1067, 1193 |
| BshFI | GGCC | 4 cut(s) | 582, 950, 1217, 1399 |
| BshNI | GGYRCC | 1 cut(s) | 17 |
| BsiHKAI | GWGCWC | 3 cut(s) | 517, 1006, 1042 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 210, 224 |
| BsmAI | GTCTC | 2 cut(s) | 167, 1339 |
| BsnI | GGCC | 4 cut(s) | 582, 950, 1217, 1399 |
| Bso31I | GGTCTC | 1 cut(s) | 1339 |
| Bsp1286I | GDGCHC | 3 cut(s) | 517, 1006, 1042 |
| Bsp1407I | TGTACA | 1 cut(s) | 615 |
| Bsp143I | GATC | 6 cut(s) | 460, 751, 895, 916, 929, 1016 |
| Bsp19I | CCATGG | 1 cut(s) | 718 |
| BspACI | CCGC | 3 cut(s) | 375, 422, 567 |
| BspANI | GGCC | 4 cut(s) | 582, 950, 1217, 1399 |
| BspCNI | CTCAG | 2 cut(s) | 565, 1354 |
| BspHI | TCATGA | 1 cut(s) | 265 |
| BspLI | GGNNCC | 2 cut(s) | 19, 716 |
| BspMAI | CTGCAG | 1 cut(s) | 454 |
| BspMI | ACCTGC | 1 cut(s) | 443 |
| BspPI | GGATC | 2 cut(s) | 455, 1024 |
| BspQI | GCTCTTC | 1 cut(s) | 1011 |
| BspT107I | GGYRCC | 1 cut(s) | 17 |
| BspTI | CTTAAG | 1 cut(s) | 796 |
| BspTNI | GGTCTC | 1 cut(s) | 1339 |
| BsrDI | GCAATG | 1 cut(s) | 387 |
| BsrGI | TGTACA | 1 cut(s) | 615 |
| BsrI | ACTGG | 1 cut(s) | 1125 |
| BssECI | CCNNGG | 5 cut(s) | 223, 464, 718, 951, 1196 |
| BssMI | GATC | 6 cut(s) | 460, 751, 895, 916, 929, 1016 |
| BssT1I | CCWWGG | 3 cut(s) | 223, 718, 951 |
| Bst2UI | CCWGG | 4 cut(s) | 76, 465, 1083, 1197 |
| Bst4CI | ACNGT | 1 cut(s) | 1350 |
| Bst6I | CTCTTC | 2 cut(s) | 1011, 1146 |
| BstAFI | CTTAAG | 1 cut(s) | 796 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 372 |
| BstAUI | TGTACA | 1 cut(s) | 615 |
| BstC8I | GCNNGC | 2 cut(s) | 236, 447 |
| BstDEI | CTNAG | 3 cut(s) | 479, 573, 1341 |
| BstDSI | CCRYGG | 1 cut(s) | 718 |
| BstF5I | GGATG | 4 cut(s) | 70, 218, 1147, 1377 |
| BstKTI | GATC | 6 cut(s) | 463, 754, 898, 919, 932, 1019 |
| BstMAI | GTCTC | 2 cut(s) | 167, 1339 |
| BstMBI | GATC | 6 cut(s) | 460, 751, 895, 916, 929, 1016 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 372 |
| BstNI | CCWGG | 4 cut(s) | 76, 465, 1083, 1197 |
| BstNSI | RCATGY | 1 cut(s) | 616 |
| BstSCI | CCNGG | 4 cut(s) | 74, 463, 1081, 1195 |
| BstSFI | CTRYAG | 2 cut(s) | 183, 450 |
| BstV1I | GCAGC | 4 cut(s) | 436, 724, 1067, 1193 |
| BstV2I | GAAGAC | 2 cut(s) | 42, 254 |
| BstX2I | RGATCY | 2 cut(s) | 929, 1016 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 725 |
| BstYI | RGATCY | 2 cut(s) | 929, 1016 |
| BsuRI | GGCC | 4 cut(s) | 582, 950, 1217, 1399 |
| BtgI | CCRYGG | 1 cut(s) | 718 |
| BtsCI | GGATG | 4 cut(s) | 70, 218, 1147, 1377 |
| BtsIMutI | CAGTG | 1 cut(s) | 1132 |
| BveI | ACCTGC | 1 cut(s) | 443 |
| Cac8I | GCNNGC | 2 cut(s) | 236, 447 |
| CciI | TCATGA | 1 cut(s) | 265 |
| CsiI | ACCWGGT | 1 cut(s) | 1081 |
| Csp6I | GTAC | 2 cut(s) | 18, 616 |
| CviAII | CATG | 9 cut(s) | 209, 239, 266, 539, 613, 687, 719, 862, 1232 |
| CviQI | GTAC | 2 cut(s) | 18, 616 |
| DdeI | CTNAG | 3 cut(s) | 479, 573, 1341 |
| DpnI | GATC | 6 cut(s) | 462, 753, 897, 918, 931, 1018 |
| DpnII | GATC | 6 cut(s) | 460, 751, 895, 916, 929, 1016 |
| Eam1104I | CTCTTC | 2 cut(s) | 1011, 1146 |
| EarI | CTCTTC | 2 cut(s) | 1011, 1146 |
| Eco130I | CCWWGG | 3 cut(s) | 223, 718, 951 |
| Eco147I | AGGCCT | 1 cut(s) | 950 |
| Eco31I | GGTCTC | 1 cut(s) | 1339 |
| Eco57I | CTGAAG | 2 cut(s) | 539, 858 |
| EcoRII | CCWGG | 4 cut(s) | 74, 463, 1081, 1195 |
| EcoT14I | CCWWGG | 3 cut(s) | 223, 718, 951 |
| EcoT22I | ATGCAT | 1 cut(s) | 499 |
| ErhI | CCWWGG | 3 cut(s) | 223, 718, 951 |
| FaeI | CATG | 9 cut(s) | 212, 242, 269, 542, 616, 690, 722, 865, 1235 |
| FatI | CATG | 9 cut(s) | 208, 238, 265, 538, 612, 686, 718, 861, 1231 |
| FblI | GTMKAC | 1 cut(s) | 1352 |
| Fnu4HI | GCNGC | 4 cut(s) | 450, 738, 1056, 1207 |
| FokI | GGATG | 4 cut(s) | 77, 205, 1154, 1384 |
| Fsp4HI | GCNGC | 4 cut(s) | 450, 738, 1056, 1207 |
| FspBI | CTAG | 3 cut(s) | 645, 1020, 1356 |
| GluI | GCNGC | 4 cut(s) | 450, 738, 1056, 1207 |
| GsuI | CTGGAG | 1 cut(s) | 1266 |
| HaeIII | GGCC | 4 cut(s) | 582, 950, 1217, 1399 |
| Hin1II | CATG | 9 cut(s) | 212, 242, 269, 542, 616, 690, 722, 865, 1235 |
| HindIII | AAGCTT | 3 cut(s) | 232, 799, 849 |
| HinfI | GANTC | 3 cut(s) | 214, 393, 1228 |
| HphI | GGTGA | 3 cut(s) | 239, 781, 1294 |
| Hpy166II | GTNNAC | 1 cut(s) | 1353 |
| Hpy188I | TCNGA | 3 cut(s) | 331, 519, 1344 |
| Hpy8I | GTNNAC | 1 cut(s) | 1353 |
| HpyAV | CCTTC | 5 cut(s) | 572, 761, 802, 833, 1324 |
| HpyCH4III | ACNGT | 1 cut(s) | 1350 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 372 |
| HpyF3I | CTNAG | 3 cut(s) | 479, 573, 1341 |
| Hsp92II | CATG | 9 cut(s) | 212, 242, 269, 542, 616, 690, 722, 865, 1235 |
| KpnI | GGTACC | 1 cut(s) | 21 |
| Kzo9I | GATC | 6 cut(s) | 460, 751, 895, 916, 929, 1016 |
| LguI | GCTCTTC | 1 cut(s) | 1011 |
| LmnI | GCTCC | 2 cut(s) | 714, 1203 |
| Lsp1109I | GCAGC | 4 cut(s) | 436, 724, 1067, 1193 |
| LweI | GCATC | 3 cut(s) | 135, 432, 484 |
| MabI | ACCWGGT | 1 cut(s) | 1081 |
| MaeI | CTAG | 3 cut(s) | 645, 1020, 1356 |
| MaeIII | GTNAC | 3 cut(s) | 787, 832, 1272 |
| MalI | GATC | 6 cut(s) | 462, 753, 897, 918, 931, 1018 |
| MboI | GATC | 6 cut(s) | 460, 751, 895, 916, 929, 1016 |
| MboII | GAAGA | 6 cut(s) | 38, 47, 254, 998, 1163, 1201 |
| MflI | RGATCY | 2 cut(s) | 929, 1016 |
| MhlI | GDGCHC | 3 cut(s) | 517, 1006, 1042 |
| MlyI | GAGTC | 1 cut(s) | 387 |
| MmeI | TCCRAC | 4 cut(s) | 273, 406, 1072, 1111 |
| MnlI | CCTC | 9 cut(s) | 54, 101, 568, 610, 697, 864, 940, 1207, 1241 |
| Mph1103I | ATGCAT | 1 cut(s) | 499 |
| MseI | TTAA | 5 cut(s) | 179, 608, 657, 797, 1319 |
| MslI | CAYNNNNRTG | 3 cut(s) | 270, 1140, 1370 |
| MspCI | CTTAAG | 1 cut(s) | 796 |
| MspR9I | CCNGG | 4 cut(s) | 76, 465, 1083, 1197 |
| MvaI | CCWGG | 4 cut(s) | 76, 465, 1083, 1197 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 372 |
| NcoI | CCATGG | 1 cut(s) | 718 |
| NdeII | GATC | 6 cut(s) | 460, 751, 895, 916, 929, 1016 |
| NlaIII | CATG | 9 cut(s) | 212, 242, 269, 542, 616, 690, 722, 865, 1235 |
| NlaIV | GGNNCC | 2 cut(s) | 19, 716 |
| NmuCI | GTSAC | 2 cut(s) | 787, 832 |
| NsiI | ATGCAT | 1 cut(s) | 499 |
| NspI | RCATGY | 1 cut(s) | 616 |
| PagI | TCATGA | 1 cut(s) | 265 |
| PceI | AGGCCT | 1 cut(s) | 950 |
| PciI | ACATGT | 1 cut(s) | 612 |
| PciSI | GCTCTTC | 1 cut(s) | 1011 |
| PfeI | GAWTC | 2 cut(s) | 214, 1228 |
| PfoI | TCCNGGA | 1 cut(s) | 74 |
| PkrI | GCNGC | 4 cut(s) | 451, 739, 1057, 1208 |
| PleI | GAGTC | 1 cut(s) | 387 |
| PpsI | GAGTC | 1 cut(s) | 387 |
| PscI | ACATGT | 1 cut(s) | 612 |
| Psp6I | CCWGG | 4 cut(s) | 74, 463, 1081, 1195 |
| PspGI | CCWGG | 4 cut(s) | 74, 463, 1081, 1195 |
| PspN4I | GGNNCC | 2 cut(s) | 19, 716 |
| PstI | CTGCAG | 1 cut(s) | 454 |
| PsuI | RGATCY | 2 cut(s) | 929, 1016 |
| RsaI | GTAC | 2 cut(s) | 19, 617 |
| RsaNI | GTAC | 2 cut(s) | 18, 616 |
| RseI | CAYNNNNRTG | 3 cut(s) | 270, 1140, 1370 |
| SapI | GCTCTTC | 1 cut(s) | 1011 |
| SaqAI | TTAA | 5 cut(s) | 179, 608, 657, 797, 1319 |
| SatI | GCNGC | 4 cut(s) | 450, 738, 1056, 1207 |
| Sau3AI | GATC | 6 cut(s) | 460, 751, 895, 916, 929, 1016 |
| SchI | GAGTC | 1 cut(s) | 387 |
| ScrFI | CCNGG | 4 cut(s) | 76, 465, 1083, 1197 |
| SduI | GDGCHC | 3 cut(s) | 517, 1006, 1042 |
| SexAI | ACCWGGT | 1 cut(s) | 1081 |
| SfaNI | GCATC | 3 cut(s) | 135, 432, 484 |
| SfcI | CTRYAG | 2 cut(s) | 183, 450 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 270, 1140, 1370 |
| SmlI | CTYRAG | 1 cut(s) | 796 |
| SmoI | CTYRAG | 1 cut(s) | 796 |
| SseBI | AGGCCT | 1 cut(s) | 950 |
| SsiI | CCGC | 3 cut(s) | 375, 422, 567 |
| SspI | AATATT | 1 cut(s) | 82 |
| SspMI | CTAG | 3 cut(s) | 645, 1020, 1356 |
| StuI | AGGCCT | 1 cut(s) | 950 |
| StyD4I | CCNGG | 4 cut(s) | 74, 463, 1081, 1195 |
| StyI | CCWWGG | 3 cut(s) | 223, 718, 951 |
| TaaI | ACNGT | 1 cut(s) | 1350 |
| TaqI | TCGA | 2 cut(s) | 33, 104 |
| TatI | WGTACW | 1 cut(s) | 615 |
| TfiI | GAWTC | 2 cut(s) | 214, 1228 |
| Tru1I | TTAA | 5 cut(s) | 179, 608, 657, 797, 1319 |
| Tru9I | TTAA | 5 cut(s) | 179, 608, 657, 797, 1319 |
| TscAI | CASTG | 1 cut(s) | 1132 |
| TseFI | GTSAC | 2 cut(s) | 787, 832 |
| TseI | GCWGC | 4 cut(s) | 449, 737, 1055, 1206 |
| Tsp45I | GTSAC | 2 cut(s) | 787, 832 |
| TspRI | CASTG | 1 cut(s) | 1132 |
| Vha464I | CTTAAG | 1 cut(s) | 796 |
| XapI | RAATTY | 3 cut(s) | 505, 1023, 1361 |
| XbaI | TCTAGA | 2 cut(s) | 644, 1019 |
| XceI | RCATGY | 1 cut(s) | 616 |
| XmiI | GTMKAC | 1 cut(s) | 1352 |
| XspI | CTAG | 3 cut(s) | 645, 1020, 1356 |
| Zsp2I | ATGCAT | 1 cut(s) | 499 |