Rorug02G0251600

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0012639
Physical Location & Seq
Reverse (-)
26199600 .. 26206535
6936 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0251600.1

Sequence Viewer

Length: 1206 bp
ATGCAACTCCTAATTGCTTCTGTGATGCTGATAAAGACAAGGATTTGGCCGAGGAAGCCTAATCTGAGGTGTAGAGAATTCAATCAATTTCGTGATCATTTGCTTAATGCTGCTCATATACAGAAGCGTAGTGATTACTTTCTCGTGTCATTGATGAGAAACTCTATTCGATCCCGAAGAAGAACTTGGTTCTACAGTTTCTTCTTGAGCTTTTCCAGTGACCAGAATCCCAATGATGAATTGGAAGTTCCAAAGACCTGGCCAGCTTATTTGGGAATTGCAGCTTATTTGGACATGCAAGTGGTTCATGATATTACTTTGTTGATCGCATGGCCAGCTTATTTGGGAATTGCAGCTTATTTGGAAGTTCCAAAGACCTGGCCAGCTTATTTGAGACTTCTGGGATTCCCATCTTCATTTGAGATTTACAACGAGGCCGAGGCTTTATCCAGAATGAGCATTTTGCAGACTACTTCCTTCCAACCTAGTCTCTGTGTCAGAAACACTTCTCAATCTCTGCACCTCTCTTCTAAGCCATATATTTTACCAGTCCATGCTAAACTTCCCCTTCAAAATCCTTCCCTGGCAACCCGTAATGCATCAAATCAGCAACAGTGCATGTCCATATTAAAGAACCAGAAATGCAGGGCTGCATCTACATACCAACATTCTTCACGTGTCTGCTTATTGGGCGGCAAGGGAAAGCATGGAAGTGATAACGAGGGCTCCCCATGGAAAGCTCTTGAGAATGCAATGGGTAATCTGAAGAAGGGATCATCGATAGAGGATGTATTACGTAGGCAGATTGATAAGAAAGAGTTCTATAAAGACAAAGACAGTGCAACACGTGGTGGTGGCAGTGGCCGTGGTGGTGGCGGCGGTGCTGGTGGCAGCGGGGGTGGTGGTGCAGGGGGTTCTAGTGGATCAGAGGATGAAGGCTTTGCCGGAATCATTGATGAAACATTTCAAGTGATTCTAGCTACTATTGGGTTTATTTTTCTGTATGTTTACATCATCAGTGGCGAGGAGTGGACTCGTTTAGCGAAAGACTACCTCAAGTTTCTCTTTAAAGGATCCGAGAGTGCTCGTTTGAAGCGAGCCATGGACAAATGGGGAAGGTTCTACCAGAAGCTGACTGAGAAGTTGTATGATAAGGTTGGAGAAGGCCATACTCAGTACCCCCAACTTGGTGGGATAGCCCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

401

Amino Acids

44.85

Weight (kDa)

9.54

Isoelectric Point (pI)

44.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012639)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g24950
malus_domestica MD05G1013600.v1.1 MD14G1083400.v1.1
prunus_persica Prupe.7G047100_v2.0.a1
pyrus_communis pycom14g07240
rosa_chinensis RchiOBHm_Chr2g0124611
rosa_laevigata RLG00000018808
rosa_multiflora Rmu_sc0005597.1_g000009
rosa_roxburghii Rroxscaffold_2G00119840
rosa_rugosa Rorug02G0251600 Rorug02G0251700
rosa_samantha Rh2AG310300 Rh2AG310400 Rh2BG318800 Rh2CG297200 Rh2CG302100 Rh2DG334000
rosa_wichuraiana Rw0G009400 Rw2G025100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 693, 876, 879, 894
AclWI GGATC 5 cut(s) 165, 781, 931, 1068, 1081
AcoI YGGCCR 5 cut(s) 47, 260, 332, 380, 862
AcsI RAATTY 1 cut(s) 77
AcuI CTGAAG 1 cut(s) 785
AcvI CACGTG 2 cut(s) 677, 848
AdeI CACNNNGTG 1 cut(s) 851
AfaI GTAC 1 cut(s) 1178
AfiI CCNNNNNNNGG 1 cut(s) 1187
AflIII ACRYGT 2 cut(s) 676, 845
AgsI TTSAA 4 cut(s) 82, 572, 968, 1093
AjnI CCWGG 3 cut(s) 257, 377, 582
AjuI GAANNNNNNNTTGG 2 cut(s) 169, 201
AluBI AGCT 9 cut(s) 210, 266, 284, 338, 356, 386, 740, 980, 1132
AluI AGCT 9 cut(s) 210, 266, 284, 338, 356, 386, 740, 980, 1132
Alw21I GWGCWC 1 cut(s) 1087
Alw26I GTCTC 2 cut(s) 388, 494
AlwI GGATC 5 cut(s) 165, 781, 931, 1068, 1081
AlwNI CAGNNNCTG 1 cut(s) 1132
AoxI GGCC 7 cut(s) 47, 260, 332, 380, 435, 862, 1165
ApeKI GCWGC 5 cut(s) 110, 281, 353, 650, 891
ApoI RAATTY 1 cut(s) 77
Asp700I GAANNNNTTC 3 cut(s) 505, 818, 963
BalI TGGCCA 3 cut(s) 262, 334, 382
BamHI GGATCC 1 cut(s) 1073
BanII GRGCYC 1 cut(s) 728
BauI CACGAG 1 cut(s) 143
BbrPI CACGTG 2 cut(s) 677, 848
Bbv12I GWGCWC 1 cut(s) 1087
BbvI GCAGC 5 cut(s) 97, 293, 365, 637, 903
BccI CCATC 1 cut(s) 418
BceAI ACGGC 1 cut(s) 849
BciT130I CCWGG 3 cut(s) 259, 379, 584
BclI TGATCA 1 cut(s) 94
BcoDI GTCTC 2 cut(s) 388, 494
BfaI CTAG 3 cut(s) 486, 918, 977
BfmI CTRYAG 1 cut(s) 193
BisI GCNGC 7 cut(s) 111, 282, 354, 651, 694, 877, 892
BlsI GCNGC 7 cut(s) 112, 283, 355, 652, 695, 878, 893
Bme1390I CCNGG 3 cut(s) 259, 379, 584
BmiI GGNNCC 2 cut(s) 727, 1075
BmrFI CCNGG 3 cut(s) 259, 379, 584
BmsI GCATC 3 cut(s) 15, 608, 662
BpuEI CTTGAG 3 cut(s) 226, 764, 1040
Bsa29I ATCGAT 1 cut(s) 779
BsaAI YACGTR 3 cut(s) 677, 797, 848
BsaBI GATNNNNATC 1 cut(s) 409
BsaJI CCNNGG 6 cut(s) 50, 438, 582, 731, 865, 1101
BsaXI ACNNNNNCTCC 2 cut(s) 710, 740
Bsc4I CCNNNNNNNGG 1 cut(s) 1187
Bse1I ACTGG 2 cut(s) 216, 548
Bse3DI GCAATG 1 cut(s) 759
Bse8I GATNNNNATC 1 cut(s) 409
BseBI CCWGG 3 cut(s) 259, 379, 584
BseCI ATCGAT 1 cut(s) 779
BseDI CCNNGG 6 cut(s) 50, 438, 582, 731, 865, 1101
BseGI GGATG 2 cut(s) 793, 937
BseJI GATNNNNATC 1 cut(s) 409
BseLI CCNNNNNNNGG 1 cut(s) 1187
BseMI GCAATG 1 cut(s) 759
BseMII CTCAG 3 cut(s) 56, 1128, 1187
BseNI ACTGG 2 cut(s) 216, 548
BseRI GAGGAG 1 cut(s) 1040
BseXI GCAGC 5 cut(s) 97, 293, 365, 637, 903
BsgI GTGCAG 2 cut(s) 503, 927
BshFI GGCC 7 cut(s) 49, 262, 334, 382, 437, 864, 1167
BshVI ATCGAT 1 cut(s) 779
BsiHKAI GWGCWC 1 cut(s) 1087
BsiSI CCGG 1 cut(s) 945
BslI CCNNNNNNNGG 1 cut(s) 1187
BsmAI GTCTC 2 cut(s) 388, 494
BsmI GAATGC 1 cut(s) 754
BsnI GGCC 7 cut(s) 49, 262, 334, 382, 437, 864, 1167
Bsp1286I GDGCHC 2 cut(s) 728, 1087
Bsp143I GATC 6 cut(s) 94, 170, 324, 773, 923, 1073
Bsp19I CCATGG 2 cut(s) 731, 1101
BspACI CCGC 4 cut(s) 693, 876, 879, 894
BspANI GGCC 7 cut(s) 49, 262, 334, 382, 437, 864, 1167
BspCNI CTCAG 3 cut(s) 57, 1129, 1186
BspDI ATCGAT 1 cut(s) 779
BspHI TCATGA 1 cut(s) 307
BspLI GGNNCC 2 cut(s) 727, 1075
BspPI GGATC 5 cut(s) 165, 781, 931, 1068, 1081
BsrDI GCAATG 1 cut(s) 759
BsrI ACTGG 2 cut(s) 216, 548
BssECI CCNNGG 6 cut(s) 50, 438, 582, 731, 865, 1101
BssMI GATC 6 cut(s) 94, 170, 324, 773, 923, 1073
BssSI CACGAG 1 cut(s) 143
BssT1I CCWWGG 2 cut(s) 731, 1101
Bst2BI CACGAG 1 cut(s) 143
Bst2UI CCWGG 3 cut(s) 259, 379, 584
Bst4CI ACNGT 3 cut(s) 197, 615, 839
Bst6I CTCTTC 1 cut(s) 532
BstBAI YACGTR 3 cut(s) 677, 797, 848
BstC8I GCNNGC 4 cut(s) 264, 336, 384, 1098
BstDEI CTNAG 4 cut(s) 65, 531, 1137, 1173
BstDSI CCRYGG 3 cut(s) 731, 865, 1101
BstF5I GGATG 2 cut(s) 793, 937
BstKTI GATC 6 cut(s) 97, 173, 327, 776, 926, 1076
BstMAI GTCTC 2 cut(s) 388, 494
BstMBI GATC 6 cut(s) 94, 170, 324, 773, 923, 1073
BstMWI GCNNNNNNNGC 3 cut(s) 55, 335, 690
BstNI CCWGG 3 cut(s) 259, 379, 584
BstNSI RCATGY 2 cut(s) 298, 622
BstSCI CCNGG 3 cut(s) 257, 377, 582
BstSFI CTRYAG 1 cut(s) 193
BstSNI TACGTA 1 cut(s) 797
BstV1I GCAGC 5 cut(s) 97, 293, 365, 637, 903
BstX2I RGATCY 1 cut(s) 1073
BstXI CCANNNNNNTGG 3 cut(s) 258, 378, 1190
BstYI RGATCY 1 cut(s) 1073
Bsu15I ATCGAT 1 cut(s) 779
BsuRI GGCC 7 cut(s) 49, 262, 334, 382, 437, 864, 1167
BsuTUI ATCGAT 1 cut(s) 779
BtgI CCRYGG 3 cut(s) 731, 865, 1101
BtsCI GGATG 2 cut(s) 793, 937
BtsI GCAGTG 1 cut(s) 865
BtsIMutI CAGTG 5 cut(s) 223, 620, 844, 865, 1024
Cac8I GCNNGC 4 cut(s) 264, 336, 384, 1098
CaiI CAGNNNCTG 1 cut(s) 1132
CciI TCATGA 1 cut(s) 307
ClaI ATCGAT 1 cut(s) 779
Csp6I GTAC 1 cut(s) 1177
CviAII CATG 8 cut(s) 295, 308, 330, 554, 619, 707, 732, 1102
CviQI GTAC 1 cut(s) 1177
DdeI CTNAG 4 cut(s) 65, 531, 1137, 1173
DpnI GATC 6 cut(s) 96, 172, 326, 775, 925, 1075
DpnII GATC 6 cut(s) 94, 170, 324, 773, 923, 1073
DraI TTTAAA 1 cut(s) 1069
DraIII CACNNNGTG 1 cut(s) 851
EaeI YGGCCR 5 cut(s) 47, 260, 332, 380, 862
Eam1104I CTCTTC 1 cut(s) 532
EarI CTCTTC 1 cut(s) 532
Eco105I TACGTA 1 cut(s) 797
Eco130I CCWWGG 2 cut(s) 731, 1101
Eco24I GRGCYC 1 cut(s) 728
Eco57I CTGAAG 1 cut(s) 785
Eco72I CACGTG 2 cut(s) 677, 848
EcoRI GAATTC 1 cut(s) 77
EcoRII CCWGG 3 cut(s) 257, 377, 582
EcoT14I CCWWGG 2 cut(s) 731, 1101
EcoT22I ATGCAT 1 cut(s) 601
EcoT38I GRGCYC 1 cut(s) 728
ErhI CCWWGG 2 cut(s) 731, 1101
FaeI CATG 8 cut(s) 298, 311, 333, 557, 622, 710, 735, 1105
FalI AAGNNNNNCTT 4 cut(s) 169, 201, 1049, 1081
FatI CATG 8 cut(s) 294, 307, 329, 553, 618, 706, 731, 1101
FauI CCCGC 1 cut(s) 887
FbaI TGATCA 1 cut(s) 94
Fnu4HI GCNGC 7 cut(s) 111, 282, 354, 651, 694, 877, 892
FokI GGATG 2 cut(s) 800, 944
FriOI GRGCYC 1 cut(s) 728
Fsp4HI GCNGC 7 cut(s) 111, 282, 354, 651, 694, 877, 892
FspBI CTAG 3 cut(s) 486, 918, 977
GluI GCNGC 7 cut(s) 111, 282, 354, 651, 694, 877, 892
HaeIII GGCC 5 cut(s) 109, 118, 534, 746, 863
HapII CCGG 1 cut(s) 945
Hin1II CATG 8 cut(s) 298, 311, 333, 557, 622, 710, 735, 1105
HinfI GANTC 5 cut(s) 226, 405, 948, 973, 1033
HpaII CCGG 1 cut(s) 945
Hpy166II GTNNAC 2 cut(s) 1009, 1032
Hpy188I TCNGA 5 cut(s) 66, 500, 765, 928, 1078
Hpy188III TCNNGA 6 cut(s) 92, 174, 205, 308, 450, 743
Hpy8I GTNNAC 2 cut(s) 1009, 1032
HpyAV CCTTC 7 cut(s) 487, 578, 588, 763, 929, 1110, 1157
HpyCH4III ACNGT 3 cut(s) 197, 615, 839
HpyCH4IV ACGT 3 cut(s) 676, 796, 847
HpyF10VI GCNNNNNNNGC 3 cut(s) 55, 335, 690
HpyF3I CTNAG 4 cut(s) 65, 531, 1137, 1173
HpySE526I ACGT 3 cut(s) 676, 796, 847
Hsp92II CATG 8 cut(s) 298, 311, 333, 557, 622, 710, 735, 1105
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 6 cut(s) 94, 170, 324, 773, 923, 1073
LmnI GCTCC 1 cut(s) 731
Lsp1109I GCAGC 5 cut(s) 97, 293, 365, 637, 903
LweI GCATC 3 cut(s) 15, 608, 662
MaeI CTAG 3 cut(s) 486, 918, 977
MaeII ACGT 3 cut(s) 676, 796, 847
MaeIII GTNAC 1 cut(s) 218
MalI GATC 6 cut(s) 96, 172, 326, 775, 925, 1075
MboI GATC 6 cut(s) 94, 170, 324, 773, 923, 1073
MboII GAAGA 7 cut(s) 189, 192, 193, 405, 519, 663, 778
MflI RGATCY 1 cut(s) 1073
MhlI GDGCHC 2 cut(s) 728, 1087
MlsI TGGCCA 3 cut(s) 262, 334, 382
MluCI AATT 6 cut(s) 12, 77, 86, 239, 276, 348
MluNI TGGCCA 3 cut(s) 262, 334, 382
MlyI GAGTC 1 cut(s) 1027
MmeI TCCRAC 2 cut(s) 505, 1138
Mox20I TGGCCA 3 cut(s) 262, 334, 382
Mph1103I ATGCAT 1 cut(s) 601
MroXI GAANNNNTTC 3 cut(s) 505, 818, 963
MscI TGGCCA 3 cut(s) 262, 334, 382
MseI TTAA 3 cut(s) 105, 629, 1068
MslI CAYNNNNRTG 2 cut(s) 299, 711
Msp20I TGGCCA 3 cut(s) 262, 334, 382
MspA1I CMGCKG 1 cut(s) 894
MspI CCGG 1 cut(s) 945
MspR9I CCNGG 3 cut(s) 259, 379, 584
Mva1269I GAATGC 1 cut(s) 754
MvaI CCWGG 3 cut(s) 259, 379, 584
MwoI GCNNNNNNNGC 3 cut(s) 55, 335, 690
NcoI CCATGG 2 cut(s) 731, 1101
NdeII GATC 6 cut(s) 94, 170, 324, 773, 923, 1073
NlaIII CATG 8 cut(s) 298, 311, 333, 557, 622, 710, 735, 1105
NlaIV GGNNCC 2 cut(s) 727, 1075
NmeAIII GCCGAG 2 cut(s) 75, 463
NmuCI GTSAC 1 cut(s) 218
NsiI ATGCAT 1 cut(s) 601
NspI RCATGY 2 cut(s) 298, 622
PagI TCATGA 1 cut(s) 307
PcsI WCGNNNNNNNCGW 1 cut(s) 1093
PctI GAATGC 1 cut(s) 754
PdmI GAANNNNTTC 3 cut(s) 505, 818, 963
PfeI GAWTC 4 cut(s) 226, 405, 948, 973
PkrI GCNGC 7 cut(s) 112, 283, 355, 652, 695, 878, 893
PleI GAGTC 1 cut(s) 1027
PmaCI CACGTG 2 cut(s) 677, 848
PmlI CACGTG 2 cut(s) 677, 848
PpsI GAGTC 1 cut(s) 1027
Ppu21I YACGTR 3 cut(s) 677, 797, 848
Psp6I CCWGG 3 cut(s) 257, 377, 582
PspCI CACGTG 2 cut(s) 677, 848
PspGI CCWGG 3 cut(s) 257, 377, 582
PspN4I GGNNCC 2 cut(s) 727, 1075
PstNI CAGNNNCTG 1 cut(s) 1132
PsuI RGATCY 1 cut(s) 1073
RsaI GTAC 1 cut(s) 1178
RsaNI GTAC 1 cut(s) 1177
RseI CAYNNNNRTG 2 cut(s) 299, 711
SaqAI TTAA 3 cut(s) 105, 629, 1068
SatI GCNGC 7 cut(s) 111, 282, 354, 651, 694, 877, 892
Sau3AI GATC 6 cut(s) 94, 170, 324, 773, 923, 1073
SchI GAGTC 1 cut(s) 1027
ScrFI CCNGG 3 cut(s) 259, 379, 584
SduI GDGCHC 2 cut(s) 728, 1087
SfaNI GCATC 3 cut(s) 15, 608, 662
SfcI CTRYAG 1 cut(s) 193
SmiMI CAYNNNNRTG 2 cut(s) 299, 711
SmlI CTYRAG 3 cut(s) 205, 743, 1055
SmoI CTYRAG 3 cut(s) 205, 743, 1055
SnaBI TACGTA 1 cut(s) 797
Sse9I AATT 6 cut(s) 12, 77, 86, 239, 276, 348
SsiI CCGC 4 cut(s) 693, 876, 879, 894
SspMI CTAG 3 cut(s) 486, 918, 977
StyD4I CCNGG 3 cut(s) 257, 377, 582
StyI CCWWGG 2 cut(s) 731, 1101
TaaI ACNGT 3 cut(s) 197, 615, 839
TaiI ACGT 3 cut(s) 679, 799, 850
TaqI TCGA 2 cut(s) 169, 779
TasI AATT 6 cut(s) 12, 77, 86, 239, 276, 348
TauI GCSGC 2 cut(s) 696, 879
TfiI GAWTC 4 cut(s) 226, 405, 948, 973
Tru1I TTAA 3 cut(s) 105, 629, 1068
Tru9I TTAA 3 cut(s) 105, 629, 1068
TscAI CASTG 5 cut(s) 223, 620, 844, 865, 1024
TseFI GTSAC 1 cut(s) 218
TseI GCWGC 5 cut(s) 110, 281, 353, 650, 891
Tsp45I GTSAC 1 cut(s) 218
TspDTI ATGAA 5 cut(s) 252, 296, 405, 948, 972
TspRI CASTG 5 cut(s) 223, 620, 844, 865, 1024
XapI RAATTY 1 cut(s) 77
XceI RCATGY 2 cut(s) 298, 622
XcmI CCANNNNNNNNNTGG 1 cut(s) 238
XmnI GAANNNNTTC 3 cut(s) 505, 818, 963
XspI CTAG 3 cut(s) 486, 918, 977
Zsp2I ATGCAT 1 cut(s) 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.