Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00369

Orthogroup ID

OG0012639

Physical Location & Seq

Genomic Coordinates Forward (+)

21400 .. 22257

Gene Structure 858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G009400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGCAAGCTGCAGGTGCTCTGAAGTTGGGAAAAGCAGTTCATGGCTACATAATAAGGAAATCATTTTGCGGAACTGAGGAAGGCCATACTCATCTTGAAACCTCCATCTTAAACATGTACATAAGATGTGGTAGCATATCTACATCTAGAGTGTGTTTTAATAGAATGGTTTTCAAAGATGTGGTGGCATGGACATCAATGATTGAGGGTTATGGGAGCCATGGGCTTGGTTTTGAAGCCGCAAAACTCTTTGATCTAATGACAAGAGAAGGAATAAAGCCAAATAGTGTCACCTTCTTAAGCTTGTTATCTGCTTATAGCCACTCTGGTCTTGTGACTGAAGGCTGTGAAGCTTTTTATTACATGAAATGGAGGTTTGGAATTGAACCTGATATAGATCATTACACTTGTGTTGTTGATCTCTTGGGCAGATCTGGAAAGCTCAAAGAGGCCTTGGTTGTCATTTTGAAAATGTTGGCTTTTCCAGATAGTAGGATTTGGGGTGCTCTTCTTTCAGGATCTAAAATTTACAGCAACAGAGCACTTGGGCAATATGCAGCCCAGAGGCTCTTGGAATTAGAACCTGGTAATGTTGGATATTTTACTCTGTTGAGTAATACAGAAGCCAGTGTTGGACATTGGGATGAAGTAGAAGAGATAAGGAAAGTAATGAAGGAGAATGACCTAAAGAAGAAGCCAGGGTGGAGCTGCATTGAGGCCAATGGAGTGATTCATGGGTTTGTTTCTGGAGGTAATTCGCACCATCACATTGAGGAGATTTATGAAGTACTGGGGGTGGTTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

268

Amino Acids

29.76

Weight (kDa)

6.83

Isoelectric Point (pI)

28.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	59 - 107	5.8e-12	PPR repeat family
PPR	PF01535	62 - 92	1.7e-07	PPR repeat
E_motif	PF20431	177 - 239	5.7e-19	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012639)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g24950
malus_domestica	MD05G1013600.v1.1 MD14G1083400.v1.1
prunus_persica	Prupe.7G047100_v2.0.a1
pyrus_communis	pycom14g07240
rosa_chinensis	RchiOBHm_Chr2g0124611
rosa_laevigata	RLG00000018808
rosa_multiflora	Rmu_sc0005597.1_g000009
rosa_roxburghii	Rroxscaffold_2G00119840
rosa_rugosa	Rorug02G0251600 Rorug02G0251700
rosa_samantha	Rh2AG310300 Rh2AG310400 Rh2BG318800 Rh2CG297200 Rh2CG302100 Rh2DG334000
rosa_wichuraiana	Rw0G009400 Rw2G025100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2
Acc36I	ACCTGC	1 cut(s)	2
AciI	CCGC	2 cut(s)	69, 240
AclWI	GGATC	1 cut(s)	526
AcsI	RAATTY	1 cut(s)	525
AcuI	CTGAAG	2 cut(s)	41, 360
AfaI	GTAC	2 cut(s)	119, 789
AflII	CTTAAG	1 cut(s)	298
AflIII	ACRYGT	1 cut(s)	114
AgsI	TTSAA	5 cut(s)	98, 175, 236, 386, 469
AjnI	CCWGG	2 cut(s)	583, 697
AjuI	GAANNNNNNNTTGG	2 cut(s)	615, 647
AloI	GAACNNNNNNTCC	2 cut(s)	21, 53
AluBI	AGCT	5 cut(s)	8, 303, 353, 442, 708
AluI	AGCT	5 cut(s)	8, 303, 353, 442, 708
Alw21I	GWGCWC	3 cut(s)	19, 508, 544
AlwI	GGATC	1 cut(s)	526
AoxI	GGCC	3 cut(s)	82, 450, 717
ApeKI	GCWGC	3 cut(s)	8, 557, 708
ApoI	RAATTY	1 cut(s)	525
AsuHPI	GGTGA	1 cut(s)	283
Bbv12I	GWGCWC	3 cut(s)	19, 508, 544
BbvI	GCAGC	2 cut(s)	569, 695
BccI	CCATC	2 cut(s)	113, 771
BciT130I	CCWGG	2 cut(s)	585, 699
BfaI	CTAG	1 cut(s)	147
BfmI	CTRYAG	1 cut(s)	9
BfrI	CTTAAG	1 cut(s)	298
BfuAI	ACCTGC	1 cut(s)	2
BglII	AGATCT	1 cut(s)	431
BisI	GCNGC	4 cut(s)	9, 240, 558, 709
BlsI	GCNGC	4 cut(s)	10, 241, 559, 710
BmcAI	AGTACT	1 cut(s)	789
Bme1390I	CCNGG	2 cut(s)	585, 699
BmiI	GGNNCC	1 cut(s)	218
BmrFI	CCNGG	2 cut(s)	585, 699
BmrI	ACTGGG	1 cut(s)	800
BmuI	ACTGGG	1 cut(s)	800
BpmI	CTGGAG	1 cut(s)	768
BsaBI	GATNNNNATC	1 cut(s)	396
BsaJI	CCNNGG	3 cut(s)	220, 453, 698
Bse1I	ACTGG	2 cut(s)	627, 795
Bse8I	GATNNNNATC	1 cut(s)	396
BseBI	CCWGG	2 cut(s)	585, 699
BseDI	CCNNGG	3 cut(s)	220, 453, 698
BseGI	GGATG	1 cut(s)	649
BseJI	GATNNNNATC	1 cut(s)	396
BseMII	CTCAG	1 cut(s)	66
BseNI	ACTGG	2 cut(s)	627, 795
BseRI	GAGGAG	1 cut(s)	788
BseXI	GCAGC	2 cut(s)	569, 695
BshFI	GGCC	3 cut(s)	84, 452, 719
BsiHKAI	GWGCWC	3 cut(s)	19, 508, 544
BsnI	GGCC	3 cut(s)	84, 452, 719
Bsp1286I	GDGCHC	3 cut(s)	19, 508, 544
Bsp1407I	TGTACA	1 cut(s)	117
Bsp143I	GATC	5 cut(s)	253, 397, 418, 431, 518
Bsp19I	CCATGG	1 cut(s)	220
BspACI	CCGC	2 cut(s)	69, 240
BspANI	GGCC	3 cut(s)	84, 452, 719
BspCNI	CTCAG	1 cut(s)	67
BspLI	GGNNCC	1 cut(s)	218
BspMAI	CTGCAG	1 cut(s)	13
BspMI	ACCTGC	1 cut(s)	2
BspPI	GGATC	1 cut(s)	526
BspQI	GCTCTTC	1 cut(s)	513
BspTI	CTTAAG	1 cut(s)	298
BsrGI	TGTACA	1 cut(s)	117
BsrI	ACTGG	2 cut(s)	627, 795
BssECI	CCNNGG	3 cut(s)	220, 453, 698
BssMI	GATC	5 cut(s)	253, 397, 418, 431, 518
BssT1I	CCWWGG	2 cut(s)	220, 453
Bst2UI	CCWGG	2 cut(s)	585, 699
Bst6I	CTCTTC	2 cut(s)	513, 648
BstAFI	CTTAAG	1 cut(s)	298
BstAUI	TGTACA	1 cut(s)	117
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	75
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	1 cut(s)	649
BstKTI	GATC	5 cut(s)	256, 400, 421, 434, 521
BstMBI	GATC	5 cut(s)	253, 397, 418, 431, 518
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstNI	CCWGG	2 cut(s)	585, 699
BstNSI	RCATGY	1 cut(s)	118
BstSCI	CCNGG	2 cut(s)	583, 697
BstSFI	CTRYAG	1 cut(s)	9
BstV1I	GCAGC	2 cut(s)	569, 695
BstX2I	RGATCY	2 cut(s)	431, 518
BstXI	CCANNNNNNTGG	1 cut(s)	227
BstYI	RGATCY	2 cut(s)	431, 518
BsuRI	GGCC	3 cut(s)	84, 452, 719
BtgI	CCRYGG	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	649
BtsIMutI	CAGTG	1 cut(s)	634
BveI	ACCTGC	1 cut(s)	2
Cac8I	GCNNGC	1 cut(s)	6
CsiI	ACCWGGT	1 cut(s)	583
Csp6I	GTAC	2 cut(s)	118, 788
CviAII	CATG	6 cut(s)	41, 115, 189, 221, 364, 734
CviQI	GTAC	2 cut(s)	118, 788
DdeI	CTNAG	1 cut(s)	75
DpnI	GATC	5 cut(s)	255, 399, 420, 433, 520
DpnII	GATC	5 cut(s)	253, 397, 418, 431, 518
Eam1104I	CTCTTC	2 cut(s)	513, 648
EarI	CTCTTC	2 cut(s)	513, 648
Eco130I	CCWWGG	2 cut(s)	220, 453
Eco147I	AGGCCT	1 cut(s)	452
Eco57I	CTGAAG	2 cut(s)	41, 360
EcoRII	CCWGG	2 cut(s)	583, 697
EcoT14I	CCWWGG	2 cut(s)	220, 453
ErhI	CCWWGG	2 cut(s)	220, 453
FaeI	CATG	6 cut(s)	44, 118, 192, 224, 367, 737
FatI	CATG	6 cut(s)	40, 114, 188, 220, 363, 733
Fnu4HI	GCNGC	4 cut(s)	9, 240, 558, 709
FokI	GGATG	1 cut(s)	656
Fsp4HI	GCNGC	4 cut(s)	9, 240, 558, 709
FspBI	CTAG	1 cut(s)	147
GluI	GCNGC	4 cut(s)	9, 240, 558, 709
GsuI	CTGGAG	1 cut(s)	768
HaeIII	GGCC	3 cut(s)	84, 452, 719
Hin1II	CATG	6 cut(s)	44, 118, 192, 224, 367, 737
HindIII	AAGCTT	2 cut(s)	301, 351
HinfI	GANTC	1 cut(s)	730
HphI	GGTGA	1 cut(s)	283
Hpy188I	TCNGA	1 cut(s)	21
Hpy188III	TCNNGA	6 cut(s)	95, 147, 435, 485, 516, 747
HpyAV	CCTTC	5 cut(s)	74, 263, 304, 335, 667
HpyCH4V	TGCA	4 cut(s)	4, 11, 557, 711
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	1 cut(s)	75
Hsp92II	CATG	6 cut(s)	44, 118, 192, 224, 367, 737
Kzo9I	GATC	5 cut(s)	253, 397, 418, 431, 518
LguI	GCTCTTC	1 cut(s)	513
LmnI	GCTCC	2 cut(s)	216, 705
Lsp1109I	GCAGC	2 cut(s)	569, 695
MabI	ACCWGGT	1 cut(s)	583
MaeI	CTAG	1 cut(s)	147
MaeIII	GTNAC	2 cut(s)	289, 334
MalI	GATC	5 cut(s)	255, 399, 420, 433, 520
MboI	GATC	5 cut(s)	253, 397, 418, 431, 518
MboII	GAAGA	3 cut(s)	500, 665, 703
MflI	RGATCY	2 cut(s)	431, 518
MhlI	GDGCHC	3 cut(s)	19, 508, 544
MluCI	AATT	4 cut(s)	381, 525, 575, 754
MmeI	TCCRAC	2 cut(s)	574, 613
MnlI	CCTC	9 cut(s)	70, 112, 199, 366, 442, 558, 709, 743, 766
MseI	TTAA	4 cut(s)	110, 159, 299, 801
MslI	CAYNNNNRTG	1 cut(s)	642
MspCI	CTTAAG	1 cut(s)	298
MspR9I	CCNGG	2 cut(s)	585, 699
MvaI	CCWGG	2 cut(s)	585, 699
MwoI	GCNNNNNNNGC	1 cut(s)	14
NcoI	CCATGG	1 cut(s)	220
NdeII	GATC	5 cut(s)	253, 397, 418, 431, 518
NlaIII	CATG	6 cut(s)	44, 118, 192, 224, 367, 737
NlaIV	GGNNCC	1 cut(s)	218
NmuCI	GTSAC	2 cut(s)	289, 334
NspI	RCATGY	1 cut(s)	118
PaqCI	CACCTGC	1 cut(s)	2
PceI	AGGCCT	1 cut(s)	452
PciI	ACATGT	1 cut(s)	114
PciSI	GCTCTTC	1 cut(s)	513
PfeI	GAWTC	1 cut(s)	730
PkrI	GCNGC	4 cut(s)	10, 241, 559, 710
PscI	ACATGT	1 cut(s)	114
Psp6I	CCWGG	2 cut(s)	583, 697
PspGI	CCWGG	2 cut(s)	583, 697
PspN4I	GGNNCC	1 cut(s)	218
PstI	CTGCAG	1 cut(s)	13
PsuI	RGATCY	2 cut(s)	431, 518
RsaI	GTAC	2 cut(s)	119, 789
RsaNI	GTAC	2 cut(s)	118, 788
RseI	CAYNNNNRTG	1 cut(s)	642
SapI	GCTCTTC	1 cut(s)	513
SaqAI	TTAA	4 cut(s)	110, 159, 299, 801
SatI	GCNGC	4 cut(s)	9, 240, 558, 709
Sau3AI	GATC	5 cut(s)	253, 397, 418, 431, 518
ScaI	AGTACT	1 cut(s)	789
ScrFI	CCNGG	2 cut(s)	585, 699
SduI	GDGCHC	3 cut(s)	19, 508, 544
SexAI	ACCWGGT	1 cut(s)	583
SfcI	CTRYAG	1 cut(s)	9
SmiMI	CAYNNNNRTG	1 cut(s)	642
SmlI	CTYRAG	1 cut(s)	298
SmoI	CTYRAG	1 cut(s)	298
Sse9I	AATT	4 cut(s)	381, 525, 575, 754
SseBI	AGGCCT	1 cut(s)	452
SsiI	CCGC	2 cut(s)	69, 240
SspMI	CTAG	1 cut(s)	147
StuI	AGGCCT	1 cut(s)	452
StyD4I	CCNGG	2 cut(s)	583, 697
StyI	CCWWGG	2 cut(s)	220, 453
TasI	AATT	4 cut(s)	381, 525, 575, 754
TatI	WGTACW	2 cut(s)	117, 787
TauI	GCSGC	1 cut(s)	242
TfiI	GAWTC	1 cut(s)	730
Tru1I	TTAA	4 cut(s)	110, 159, 299, 801
Tru9I	TTAA	4 cut(s)	110, 159, 299, 801
TscAI	CASTG	1 cut(s)	634
TseFI	GTSAC	2 cut(s)	289, 334
TseI	GCWGC	3 cut(s)	8, 557, 708
Tsp45I	GTSAC	2 cut(s)	289, 334
TspDTI	ATGAA	6 cut(s)	29, 380, 660, 686, 722, 798
TspRI	CASTG	1 cut(s)	634
Vha464I	CTTAAG	1 cut(s)	298
XapI	RAATTY	1 cut(s)	525
XbaI	TCTAGA	1 cut(s)	146
XceI	RCATGY	1 cut(s)	118
XspI	CTAG	1 cut(s)	147
ZrmI	AGTACT	1 cut(s)	789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.