Rmu_sc0006163.1_g000001

Regulation of nuclear pre-mRNA domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006163.1
OG0008113
Physical Location & Seq
Reverse (-)
2656 .. 12016
9361 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1116 bp
atgagttgtggagcaaaagtctgcaagagcatcaacttggccgacaacaagaagaagaagaagaagaagaagaagaagactccaagtgacctctgcatccgctgctctggggatgtaaaaaaactgagcaacagcaggatgagcaacaacgaaggttttgacggacatatactatctgagaagctctccaaactcaacaattcacaacaaagcatcgagtctctttctcgttggtgtatttctcatcggaagaaagcaaagcagattgttgaaacatgggacaagtatttcaattcttcccaaaaagatcagcgtgtgtcttttctatatctggcgaatgacatattgcaaaacagtaggcgaaagggcagtgagtttgtgaatgaattttggaaagttcttcctgcagctctcaagcatgtttatgaaaatggtgatgaccacggaaagaaagctgccatgagactggttgacatatgggatgaaaggaaggtttttggttctcgagggcaaactcttaaagatgaaatgacgggaaagaatcctcctccacctataagcaacggaaagatttcaaatcctatcaagatagtgaagagggatgcacactcagttagaatcaaattggctgttggaggtctaccagaaaagatactcaccgcacttcaacctgttcttgatgaacatgctagcgaagaagctgctttaaacaagtgtagtgttgctgcacattatgtgggtaaaatagaggaagaggttgaaaacaacttgactcaagggactcagcagagatctacattgttggatgatctgaaggagcaggaagatgtacttaatctatctattggacagcttgaagctgtggcagcaacaaggtctgccttggttttgcagcttaaagaagcacttcaggaccaagaaccaaagctggaagctgttcgcactcagttacaagacttggttgggaaacggattcgtgcagaaataacattatgttctagtgtaattgaaggcttcatcgtgggtgatgcaactactgctggaacatcaaaagagcggcatggaaagcagggtgcaaagaggtccacagagggtactgattgtcagttagactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CTD_bind

Protein Analysis

371

Amino Acids

41.27

Weight (kDa)

9.24

Isoelectric Point (pI)

44.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CID PF04818 57 - 168 2e-40 CID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1057
AccI GTMKAC 1 cut(s) 640
AciI CCGC 3 cut(s) 100, 660, 1057
AcoI YGGCCR 1 cut(s) 39
AcsI RAATTY 1 cut(s) 386
AcuI CTGAAG 2 cut(s) 833, 893
AfaI GTAC 2 cut(s) 831, 1096
AgsI TTSAA 7 cut(s) 272, 292, 576, 668, 761, 857, 1010
AluBI AGCT 9 cut(s) 184, 410, 455, 701, 853, 860, 895, 928, 935
AluI AGCT 9 cut(s) 184, 410, 455, 701, 853, 860, 895, 928, 935
Alw26I GTCTC 2 cut(s) 225, 457
Ama87I CYCGRG 1 cut(s) 504
AoxI GGCC 1 cut(s) 39
ApeKI GCWGC 7 cut(s) 102, 407, 455, 701, 725, 866, 892
ApoI RAATTY 1 cut(s) 386
Asp700I GAANNNNTTC 3 cut(s) 571, 906, 936
AspS9I GGNCC 2 cut(s) 913, 1083
AsuHPI GGTGA 3 cut(s) 446, 649, 1037
AsuNHI GCTAGC 1 cut(s) 689
AvaI CYCGRG 1 cut(s) 504
AvaII GGWCC 2 cut(s) 913, 1083
BbsI GAAGAC 1 cut(s) 83
BbvI GCAGC 7 cut(s) 89, 419, 442, 688, 712, 878, 904
BcgI CGANNNNNNTGC 2 cut(s) 683, 717
BcoDI GTCTC 2 cut(s) 225, 457
BfaI CTAG 2 cut(s) 690, 999
BfmI CTRYAG 1 cut(s) 405
BglII AGATCT 1 cut(s) 791
BisI GCNGC 8 cut(s) 103, 408, 456, 702, 726, 867, 893, 1058
BlsI GCNGC 8 cut(s) 104, 409, 457, 703, 727, 868, 894, 1059
Bme18I GGWCC 2 cut(s) 913, 1083
BmeT110I CYCGRG 1 cut(s) 504
BmgT120I GGNCC 2 cut(s) 913, 1083
BmsI GCATC 5 cut(s) 39, 105, 222, 592, 1018
BmtI GCTAGC 1 cut(s) 693
BpiI GAAGAC 1 cut(s) 83
BplI GAGNNNNNCTC 2 cut(s) 170, 202
BpuEI CTTGAG 2 cut(s) 398, 759
BsaJI CCNNGG 2 cut(s) 442, 882
BsaXI ACNNNNNCTCC 1 cut(s) 33
Bse1I ACTGG 1 cut(s) 471
BseDI CCNNGG 2 cut(s) 442, 882
BseGI GGATG 6 cut(s) 96, 118, 144, 487, 607, 811
BseMII CTCAG 5 cut(s) 116, 168, 624, 797, 959
BseNI ACTGG 1 cut(s) 471
BseRI GAGGAG 1 cut(s) 537
BseXI GCAGC 7 cut(s) 89, 419, 442, 688, 712, 878, 904
BsgI GTGCAG 2 cut(s) 711, 999
BshFI GGCC 1 cut(s) 41
BsiHKCI CYCGRG 1 cut(s) 504
BslFI GGGAC 2 cut(s) 293, 793
BsmAI GTCTC 2 cut(s) 225, 457
BsmFI GGGAC 2 cut(s) 293, 793
BsnI GGCC 1 cut(s) 41
BsoBI CYCGRG 1 cut(s) 504
Bsp143I GATC 3 cut(s) 307, 791, 808
BspACI CCGC 3 cut(s) 100, 660, 1057
BspANI GGCC 1 cut(s) 41
BspCNI CTCAG 5 cut(s) 117, 169, 623, 796, 958
BspMAI CTGCAG 1 cut(s) 409
BspOI GCTAGC 1 cut(s) 693
BsrBI CCGCTC 1 cut(s) 1057
BsrI ACTGG 1 cut(s) 471
BssECI CCNNGG 2 cut(s) 442, 882
BssMI GATC 3 cut(s) 307, 791, 808
BssT1I CCWWGG 1 cut(s) 882
Bst4CI ACNGT 1 cut(s) 356
Bst6I CTCTTC 2 cut(s) 590, 747
BstAPI GCANNNNNTGC 2 cut(s) 102, 1037
BstC8I GCNNGC 1 cut(s) 691
BstDEI CTNAG 5 cut(s) 125, 177, 610, 783, 945
BstDSI CCRYGG 1 cut(s) 442
BstF5I GGATG 6 cut(s) 96, 118, 144, 487, 607, 811
BstKTI GATC 3 cut(s) 310, 794, 811
BstMAI GTCTC 2 cut(s) 225, 457
BstMBI GATC 3 cut(s) 307, 791, 808
BstMWI GCNNNNNNNGC 5 cut(s) 102, 141, 866, 1037, 1066
BstNSI RCATGY 2 cut(s) 422, 689
BstSFI CTRYAG 1 cut(s) 405
BstV1I GCAGC 7 cut(s) 89, 419, 442, 688, 712, 878, 904
BstV2I GAAGAC 1 cut(s) 83
BstX2I RGATCY 1 cut(s) 791
BstXI CCANNNNNNTGG 1 cut(s) 466
BstYI RGATCY 1 cut(s) 791
BsuRI GGCC 1 cut(s) 41
BtgI CCRYGG 1 cut(s) 442
BtsCI GGATG 6 cut(s) 96, 118, 144, 487, 607, 811
BtsI GCAGTG 1 cut(s) 376
BtsIMutI CAGTG 1 cut(s) 376
Cac8I GCNNGC 1 cut(s) 691
Cfr13I GGNCC 2 cut(s) 913, 1083
Csp6I GTAC 2 cut(s) 830, 1095
CviAII CATG 5 cut(s) 276, 419, 460, 686, 1061
CviQI GTAC 2 cut(s) 830, 1095
DdeI CTNAG 5 cut(s) 125, 177, 610, 783, 945
DpnI GATC 3 cut(s) 309, 793, 810
DpnII GATC 3 cut(s) 307, 791, 808
DraI TTTAAA 1 cut(s) 708
EaeI YGGCCR 1 cut(s) 39
Eam1104I CTCTTC 2 cut(s) 590, 747
EarI CTCTTC 2 cut(s) 590, 747
Eco130I CCWWGG 1 cut(s) 882
Eco47I GGWCC 2 cut(s) 913, 1083
Eco57I CTGAAG 2 cut(s) 833, 893
Eco88I CYCGRG 1 cut(s) 504
EcoT14I CCWWGG 1 cut(s) 882
ErhI CCWWGG 1 cut(s) 882
FaeI CATG 5 cut(s) 279, 422, 463, 689, 1064
FalI AAGNNNNNCTT 4 cut(s) 816, 848, 891, 923
FaqI GGGAC 2 cut(s) 293, 793
FatI CATG 5 cut(s) 275, 418, 459, 685, 1060
FauNDI CATATG 1 cut(s) 476
FblI GTMKAC 1 cut(s) 640
Fnu4HI GCNGC 8 cut(s) 103, 408, 456, 702, 726, 867, 893, 1058
FokI GGATG 6 cut(s) 83, 125, 151, 494, 614, 818
Fsp4HI GCNGC 8 cut(s) 103, 408, 456, 702, 726, 867, 893, 1058
FspBI CTAG 2 cut(s) 690, 999
GluI GCNGC 8 cut(s) 103, 408, 456, 702, 726, 867, 893, 1058
HaeIII GGCC 1 cut(s) 41
Hin1II CATG 5 cut(s) 279, 422, 463, 689, 1064
HincII GTYRAC 1 cut(s) 472
HindII GTYRAC 1 cut(s) 472
HinfI GANTC 7 cut(s) 79, 218, 541, 618, 772, 781, 973
HphI GGTGA 3 cut(s) 446, 649, 1037
Hpy166II GTNNAC 3 cut(s) 472, 641, 1086
Hpy188I TCNGA 3 cut(s) 178, 249, 813
Hpy188III TCNNGA 4 cut(s) 504, 586, 677, 911
Hpy8I GTNNAC 3 cut(s) 472, 641, 1086
HpyAV CCTTC 4 cut(s) 146, 484, 808, 1004
HpyCH4III ACNGT 1 cut(s) 356
HpyF10VI GCNNNNNNNGC 5 cut(s) 102, 141, 866, 1037, 1066
HpyF3I CTNAG 5 cut(s) 125, 177, 610, 783, 945
Hsp92II CATG 5 cut(s) 279, 422, 463, 689, 1064
Kzo9I GATC 3 cut(s) 307, 791, 808
LmnI GCTCC 2 cut(s) 11, 817
Lsp1109I GCAGC 7 cut(s) 89, 419, 442, 688, 712, 878, 904
LweI GCATC 5 cut(s) 39, 105, 222, 592, 1018
MaeI CTAG 2 cut(s) 690, 999
MaeIII GTNAC 2 cut(s) 86, 948
MalI GATC 3 cut(s) 309, 793, 810
MbiI CCGCTC 1 cut(s) 1057
MboI GATC 3 cut(s) 307, 791, 808
MflI RGATCY 1 cut(s) 791
MluCI AATT 5 cut(s) 199, 292, 386, 623, 1005
MlyI GAGTC 4 cut(s) 73, 227, 766, 775
MmeI TCCRAC 2 cut(s) 613, 783
MroXI GAANNNNTTC 3 cut(s) 571, 906, 936
MseI TTAA 4 cut(s) 519, 707, 834, 897
MslI CAYNNNNRTG 1 cut(s) 423
MspA1I CMGCKG 1 cut(s) 102
MwoI GCNNNNNNNGC 5 cut(s) 102, 141, 866, 1037, 1066
NdeI CATATG 1 cut(s) 476
NdeII GATC 3 cut(s) 307, 791, 808
NheI GCTAGC 1 cut(s) 689
NlaIII CATG 5 cut(s) 279, 422, 463, 689, 1064
NmuCI GTSAC 1 cut(s) 86
NspI RCATGY 2 cut(s) 422, 689
PaeR7I CTCGAG 1 cut(s) 504
PdmI GAANNNNTTC 3 cut(s) 571, 906, 936
PfeI GAWTC 3 cut(s) 541, 618, 973
PkrI GCNGC 8 cut(s) 104, 409, 457, 703, 727, 868, 894, 1059
PleI GAGTC 4 cut(s) 73, 226, 766, 775
PpsI GAGTC 4 cut(s) 73, 226, 766, 775
PspPI GGNCC 2 cut(s) 913, 1083
PstI CTGCAG 1 cut(s) 409
PsuI RGATCY 1 cut(s) 791
RsaI GTAC 2 cut(s) 831, 1096
RsaNI GTAC 2 cut(s) 830, 1095
RseI CAYNNNNRTG 1 cut(s) 423
SaqAI TTAA 4 cut(s) 519, 707, 834, 897
SatI GCNGC 8 cut(s) 103, 408, 456, 702, 726, 867, 893, 1058
Sau3AI GATC 3 cut(s) 307, 791, 808
Sau96I GGNCC 2 cut(s) 913, 1083
SchI GAGTC 4 cut(s) 73, 227, 766, 775
SfaNI GCATC 5 cut(s) 39, 105, 222, 592, 1018
SfcI CTRYAG 1 cut(s) 405
Sfr274I CTCGAG 1 cut(s) 504
SinI GGWCC 2 cut(s) 913, 1083
SlaI CTCGAG 1 cut(s) 504
SmiMI CAYNNNNRTG 1 cut(s) 423
SmlI CTYRAG 3 cut(s) 413, 504, 774
SmoI CTYRAG 3 cut(s) 413, 504, 774
Sse9I AATT 5 cut(s) 199, 292, 386, 623, 1005
SsiI CCGC 3 cut(s) 100, 660, 1057
SspMI CTAG 2 cut(s) 690, 999
StyI CCWWGG 1 cut(s) 882
TaaI ACNGT 1 cut(s) 356
TaqI TCGA 2 cut(s) 216, 505
TasI AATT 5 cut(s) 199, 292, 386, 623, 1005
TatI WGTACW 1 cut(s) 829
TauI GCSGC 1 cut(s) 1060
TfiI GAWTC 3 cut(s) 541, 618, 973
Tru1I TTAA 4 cut(s) 519, 707, 834, 897
Tru9I TTAA 4 cut(s) 519, 707, 834, 897
TscAI CASTG 1 cut(s) 376
TseFI GTSAC 1 cut(s) 86
TseI GCWGC 7 cut(s) 102, 407, 455, 701, 725, 866, 892
Tsp45I GTSAC 1 cut(s) 86
TspDTI ATGAA 6 cut(s) 399, 441, 498, 540, 696, 1006
TspGWI ACGGA 4 cut(s) 177, 459, 579, 985
TspRI CASTG 1 cut(s) 376
VpaK11BI GGWCC 2 cut(s) 913, 1083
XapI RAATTY 1 cut(s) 386
XceI RCATGY 2 cut(s) 422, 689
XhoI CTCGAG 1 cut(s) 504
XmiI GTMKAC 1 cut(s) 640
XmnI GAANNNNTTC 3 cut(s) 571, 906, 936
XspI CTAG 2 cut(s) 690, 999
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.