Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006263.1

Orthogroup ID

OG0003470

Physical Location & Seq

Genomic Coordinates Reverse (-)

40519 .. 45591

Gene Structure 5073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006263.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2958 bp

atggtgcttgggataagagcaaagagccggaagagtgctgcggttgaggtagattatgttatacatgtgctggaaattaaaccatggccctcgtctcaggctttgaaatctgttgagtctgtgtttcttcaatggggaaatggtgatcaagcgtctggatcattctttcgtaatgttggagacgagaagattgaatttggggagtcgttcaggcttccggttgttttgtacaaggagaagtcaagaaaaagctcggcgcgtgacacttaccagaagaacaacttagagtttcatctgtctgcacctcgaaaggacaaggcagctaaacttttgggatcggctgtgataaatcttgcagattatgcgaccatagttgaaactacgaatgtgagagttccactgaacttgaagaagagttctaagagttcagctcagccggttctttatattaatgttcagccttgtgattatgcgaccatagttgaaaccatgaatgtgagagttccactgaacttcaagaagagttctaagagttcagctcagccggttctttatgttaatgttcagccttgtggtaatgatagctgccacttggccaaacaagtgtcgctggacaaccatggaagtcatgggtctctggatgacgagattgcctcttttactgatgatgatggtgatgatcagtcttcacattcatcacgtactgtaacctcttctgcttttgaggcaccagtcagttcatcaccaagtgctgataagaatgcgtcagaatcaacaattgataacactagaaggatttatgaggaaccaaccgtacattcaatagcagcacctgcaaacactgttatgaatccagtcgctaatgcattgaaacatcaaagtggaagttcatctccactgttgtcaataggctcttcctcccctcggaaacctgcttatgattatatttctttgcctcacccttcaagggagagatcagtgccaaccttgaaaaaatctcaggctacaaactcaatatctgcaagctatgcagatttagaatcccttcaagatgatgatcatctcgttaaggtgaatgaatattcttttgatggcaaattagcttctaggttttcacaagatgctaccagaaagccagtcactttaaagagtgaaacttttacagtcagcaataatgttggatcacgggaaagcaaggttaaaagtactgaattaaagcatgtaaagtccatgaaaccttctatctcagctgagaccaatagtcggttaagaaaacatgagtttatgaaaaagtcaaaggaagctgagattcctgaagatggtcgtgttggtggtatcattagtgcaaagtgtgaaagagaagaaacagcaactagctgttctgatagtaaaattgagctggagtctacaattgaaatgcttaaggatgagttgagagaagcggctgctgttgaggttggcctttactccattgtcgccgagcatgggagtaacacgaataagatccatgctcctgctcgccgactttctagattctattttcatgcttgcaaaatgagatctcaagctaagaaggcaaatgcagcaagaactgctattactggattaattttggtttctaaagcttgtggaaatgatgttccaaggttgactttctggttgtcgaactcaattgtgttgagagctattgtcagccagggcttagggaaagctcaagtttcaaatggaccatgcactacaattaaaggtggcaaacagtatgcagcggataggtatttatcagcaaaggataggattcgtactcgcaatgatgagaaagataacattcttgaaagttttgataattgggaggatccacatatatttatggttgctttggaaaagtttgaagcttggatattctcccggatagttgagtctgtatggtggcagaatataactccacatatgcagtctgcagctgcgaaaggctcaagcacaaggaaagctaatggaagaaagaaaggtttgagtgatcatgagcagggtaatttttctattgagctgtggacgaaggctttcaaagatgcctgtgaaaggctctgtcctgttcgagctggtggccataagtgtggctgcttgcctcttctagctcgtttggtcatggagcagttggtgagtaggttggatgtggctatgttcaatgctattcttcgtgaaaatgctgaagagatgcccacagatcccgtgtccgaccctataagtgattccaaggttctccctattccagctggaaaatcaagttttggggcaggcgcacagctaaaaaatgcgattggaagctggtccagatggctgactgatctatttggtatggatgatactgatgttccagacgatgaggatgaactcagtgatcacaaggggcaggagagtgaaacatcctttaaagctttccgtcttctcaatgctttgagtgatctcatgatgcttccatctgaaatgcttgcagataaatccaccagagaagaggtatgccctacattcggtgcatcaatgatcaagagggtcctttacaattttgttacagatgagttttgcccagacccgattcccgaagcagtttttgaggctcttgacaatgaggagaatctggaagctgaaacagaatctgttacaagtttcccatttattgcaaatcccacattttattcaccacctccagctgctgcttctctatcaggcatgacaggagaggtggggagcccagctcacctaaggagtgggtcatcagtgcttaagaaatcatatactagtgatgatgagcttgatgagttggattcaccgatgacatcaatcgtagaaaattcccaggtttcccccaagtcgttgacagccaacccaatgctgaagtggaagggtggtcggaaagttgtccgatatcaactcctccgtcaggtttggaaggacagtgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NT-C2

Protein Analysis

985

Amino Acids

108.37

Weight (kDa)

6.45

Isoelectric Point (pI)

44.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003470)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g24100 FvH4_4g24100 FvH4_4g24100
malus_domestica	MD13G1115500.v1.1 MD16G1115400.v1.1
prunus_persica	Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1
pyrus_communis	pycom13g10000 pycom16g09790
rosa_chinensis	RchiOBHm_Chr4g0430881
rosa_laevigata	RLG00000006942
rosa_multiflora	Rmu_sc0006263.1_g000008 Rmu_sc0030097.1_g000001 Rmu_sc0030098.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372570
rosa_rugosa	Rorug04G0246700 Rorug04G0246800 Rorug04G0246900 Rorug04G0247000
rosa_samantha	Rh4AG302500 Rh4AG303400 Rh4BG310600 Rh4CG327000 Rh4DG306800
rosa_wichuraiana	Rw4G026290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	841
Acc36I	ACCTGC	2 cut(s)	841, 940
AccB1I	GGYRCC	1 cut(s)	727
AccI	GTMKAC	1 cut(s)	1406
AccII	CGCG	1 cut(s)	259
AciI	CCGC	3 cut(s)	41, 1442, 1766
AclWI	GGATC	7 cut(s)	166, 343, 1189, 1498, 1847, 1860, 2216
AcoI	YGGCCR	2 cut(s)	594, 2101
AcsI	RAATTY	2 cut(s)	194, 2845
AcuI	CTGAAG	3 cut(s)	1335, 2226, 2909
AdeI	CACNNNGTG	1 cut(s)	749
AfaI	GTAC	5 cut(s)	230, 703, 816, 1207, 1801
AfiI	CCNNNNNNNGG	8 cut(s)	924, 967, 1263, 1319, 1485, 2076, 2525, 2935
AflII	CTTAAG	2 cut(s)	1421, 2777
AflIII	ACRYGT	1 cut(s)	64
AhdI	GACNNNNNGTC	1 cut(s)	1260
AhlI	ACTAGT	1 cut(s)	2792
AjnI	CCWGG	2 cut(s)	1695, 2850
AjuI	GAANNNNNNNTTGG	2 cut(s)	802, 834
AloI	GAACNNNNNNTCC	2 cut(s)	1623, 1655
Alw26I	GTCTC	4 cut(s)	99, 174, 639, 1247
AlwI	GGATC	7 cut(s)	166, 343, 1189, 1498, 1847, 1860, 2216
AlwNI	CAGNNNCTG	4 cut(s)	833, 2651, 2708, 2955
AoxI	GGCC	4 cut(s)	86, 594, 1459, 2101
ApoI	RAATTY	2 cut(s)	194, 2845
AseI	ATTAAT	2 cut(s)	450, 1607
Asp700I	GAANNNNTTC	2 cut(s)	1044, 2057
AspLEI	GCGC	2 cut(s)	259, 2297
AspS9I	GGNCC	4 cut(s)	87, 1727, 2325, 2548
AsuC2I	CCSGG	1 cut(s)	1906
AsuHPI	GGTGA	9 cut(s)	155, 686, 735, 950, 1084, 2167, 2685, 2744, 2814
AvaII	GGWCC	3 cut(s)	1727, 2325, 2548
AxyI	CCTNAGG	1 cut(s)	2756
BaeI	ACNNNNGTAYC	2 cut(s)	2352, 2385
BalI	TGGCCA	2 cut(s)	596, 2103
BamHI	GGATCC	1 cut(s)	1852
BanI	GGYRCC	1 cut(s)	727
BanII	GRGCYC	1 cut(s)	2747
BbsI	GAAGAC	2 cut(s)	678, 2432
BccI	CCATC	5 cut(s)	665, 1085, 1313, 2325, 2482
BciT130I	CCWGG	2 cut(s)	1697, 2852
BclI	TGATCA	6 cut(s)	145, 679, 1057, 2014, 2395, 2538
BcnI	CCSGG	1 cut(s)	1906
BcoDI	GTCTC	4 cut(s)	99, 174, 639, 1247
BcuI	ACTAGT	1 cut(s)	2792
BfaI	CTAG	6 cut(s)	789, 1107, 1374, 1530, 2129, 2793
BfmI	CTRYAG	1 cut(s)	1956
BfrI	CTTAAG	2 cut(s)	1421, 2777
BfuAI	ACCTGC	2 cut(s)	841, 940
BglII	AGATCT	1 cut(s)	1559
BlpI	GCTNAGC	2 cut(s)	432, 540
BmcAI	AGTACT	1 cut(s)	1207
Bme1390I	CCNGG	3 cut(s)	1697, 1906, 2852
Bme18I	GGWCC	3 cut(s)	1727, 2325, 2548
BmeRI	GACNNNNNGTC	1 cut(s)	1260
BmgT120I	GGNCC	4 cut(s)	87, 1727, 2325, 2548
BmiI	GGNNCC	5 cut(s)	729, 807, 1854, 2549, 2744
BmrFI	CCNGG	3 cut(s)	1697, 1906, 2852
BmsI	GCATC	5 cut(s)	1111, 2056, 2202, 2457, 2540
BpiI	GAAGAC	2 cut(s)	678, 2432
BplI	GAGNNNNNCTC	8 cut(s)	415, 447, 523, 555, 638, 670, 2734, 2766
BpmI	CTGGAG	2 cut(s)	1421, 2685
Bpu10I	CCTNAGC	1 cut(s)	1702
Bpu1102I	GCTNAGC	2 cut(s)	432, 540
BpuEI	CTTGAG	3 cut(s)	1548, 1698, 1957
BpuMI	CCSGG	1 cut(s)	1906
BsaAI	YACGTR	1 cut(s)	701
BsaBI	GATNNNNATC	2 cut(s)	1056, 1059
BsaI	GGTCTC	2 cut(s)	639, 1247
BsaJI	CCNNGG	7 cut(s)	83, 619, 923, 1643, 1696, 2250, 2850
BsaWI	WCCGGW	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	8 cut(s)	924, 967, 1263, 1319, 1485, 2076, 2525, 2935
Bse118I	RCCGGY	2 cut(s)	436, 544
Bse1I	ACTGG	4 cut(s)	731, 854, 1136, 1606
Bse21I	CCTNAGG	1 cut(s)	2756
Bse3DI	GCAATG	1 cut(s)	1813
Bse8I	GATNNNNATC	2 cut(s)	1056, 1059
BseBI	CCWGG	2 cut(s)	1697, 2852
BseDI	CCNNGG	7 cut(s)	83, 619, 923, 1643, 1696, 2250, 2850
BseGI	GGATG	6 cut(s)	646, 1432, 2173, 2362, 2389, 2420
BseJI	GATNNNNATC	2 cut(s)	1056, 1059
BseLI	CCNNNNNNNGG	8 cut(s)	924, 967, 1263, 1319, 1485, 2076, 2525, 2935
BseMI	GCAATG	1 cut(s)	1813
BseMII	CTCAG	8 cut(s)	110, 446, 554, 1013, 1242, 1260, 1296, 2404
BseNI	ACTGG	4 cut(s)	731, 854, 1136, 1606
BseRI	GAGGAG	2 cut(s)	2639, 2918
BseYI	CCCAGC	1 cut(s)	2746
BsgI	GTGCAG	1 cut(s)	285
Bsh1236I	CGCG	1 cut(s)	259
BshFI	GGCC	4 cut(s)	88, 596, 1461, 2103
BshNI	GGYRCC	1 cut(s)	727
BsiSI	CCGG	5 cut(s)	28, 218, 437, 545, 1906
BslI	CCNNNNNNNGG	8 cut(s)	924, 967, 1263, 1319, 1485, 2076, 2525, 2935
BsmAI	GTCTC	4 cut(s)	99, 174, 639, 1247
BsmBI	CGTCTC	2 cut(s)	99, 174
BsmI	GAATGC	1 cut(s)	766
BsnI	GGCC	4 cut(s)	88, 596, 1461, 2103
Bso31I	GGTCTC	2 cut(s)	639, 1247
Bsp1286I	GDGCHC	1 cut(s)	2747
Bsp1407I	TGTACA	1 cut(s)	228
Bsp1720I	GCTNAGC	2 cut(s)	432, 540
Bsp19I	CCATGG	2 cut(s)	83, 619
BspACI	CCGC	3 cut(s)	41, 1442, 1766
BspANI	GGCC	4 cut(s)	88, 596, 1461, 2103
BspCNI	CTCAG	8 cut(s)	109, 445, 553, 1012, 1243, 1259, 1297, 2403
BspFNI	CGCG	1 cut(s)	259
BspHI	TCATGA	2 cut(s)	2017, 2463
BspLI	GGNNCC	5 cut(s)	729, 807, 1854, 2549, 2744
BspMAI	CTGCAG	1 cut(s)	1960
BspMI	ACCTGC	2 cut(s)	841, 940
BspPI	GGATC	7 cut(s)	166, 343, 1189, 1498, 1847, 1860, 2216
BspQI	GCTCTTC	1 cut(s)	919
BspT107I	GGYRCC	1 cut(s)	727
BspTI	CTTAAG	2 cut(s)	1421, 2777
BspTNI	GGTCTC	2 cut(s)	639, 1247
BsrDI	GCAATG	1 cut(s)	1813
BsrFI	RCCGGY	2 cut(s)	436, 544
BsrGI	TGTACA	1 cut(s)	228
BsrI	ACTGG	4 cut(s)	731, 854, 1136, 1606
BssAI	RCCGGY	2 cut(s)	436, 544
BssECI	CCNNGG	7 cut(s)	83, 619, 923, 1643, 1696, 2250, 2850
BssT1I	CCWWGG	4 cut(s)	83, 619, 1643, 2250
Bst2UI	CCWGG	2 cut(s)	1697, 2852
Bst4CI	ACNGT	7 cut(s)	706, 814, 844, 900, 1165, 1758, 2951
Bst6I	CTCTTC	8 cut(s)	26, 407, 515, 718, 919, 2130, 2202, 2502
BstAFI	CTTAAG	2 cut(s)	1421, 2777
BstAPI	GCANNNNNTGC	4 cut(s)	362, 833, 1028, 1592
BstAUI	TGTACA	1 cut(s)	228
BstBAI	YACGTR	1 cut(s)	701
BstC8I	GCNNGC	6 cut(s)	1024, 1519, 1549, 2120, 2293, 2487
BstDSI	CCRYGG	2 cut(s)	83, 619
BstENI	CCTNNNNNAGG	2 cut(s)	2074, 2933
BstF5I	GGATG	6 cut(s)	646, 1432, 2173, 2362, 2389, 2420
BstFNI	CGCG	1 cut(s)	259
BstHHI	GCGC	2 cut(s)	259, 2297
BstMAI	GTCTC	4 cut(s)	99, 174, 639, 1247
BstMWI	GCNNNNNNNGC	7 cut(s)	362, 725, 833, 1028, 1574, 1583, 1592
BstNI	CCWGG	2 cut(s)	1697, 2852
BstNSI	RCATGY	2 cut(s)	68, 1223
BstSCI	CCNGG	3 cut(s)	1695, 1904, 2850
BstSFI	CTRYAG	1 cut(s)	1956
BstUI	CGCG	1 cut(s)	259
BstV2I	GAAGAC	2 cut(s)	678, 2432
BstX2I	RGATCY	4 cut(s)	1503, 1559, 1852, 2221
BstXI	CCANNNNNNTGG	1 cut(s)	2111
BstYI	RGATCY	4 cut(s)	1503, 1559, 1852, 2221
Bsu36I	CCTNAGG	1 cut(s)	2756
BsuRI	GGCC	4 cut(s)	88, 596, 1461, 2103
BtgI	CCRYGG	2 cut(s)	83, 619
BtsCI	GGATG	6 cut(s)	646, 1432, 2173, 2362, 2389, 2420
BtsIMutI	CAGTG	8 cut(s)	398, 506, 840, 896, 984, 2398, 2778, 2956
BveI	ACCTGC	2 cut(s)	841, 940
Cac8I	GCNNGC	6 cut(s)	1024, 1519, 1549, 2120, 2293, 2487
CaiI	CAGNNNCTG	4 cut(s)	833, 2651, 2708, 2955
CciI	TCATGA	2 cut(s)	2017, 2463
CfoI	GCGC	2 cut(s)	259, 2297
Cfr10I	RCCGGY	2 cut(s)	436, 544
Cfr13I	GGNCC	4 cut(s)	87, 1727, 2325, 2548
CseI	GACGC	2 cut(s)	141, 753
Csp6I	GTAC	5 cut(s)	229, 702, 815, 1206, 1800
CspCI	CAANNNNNGTGG	2 cut(s)	387, 422
CviQI	GTAC	5 cut(s)	229, 702, 815, 1206, 1800
DraI	TTTAAA	2 cut(s)	1146, 2428
DraIII	CACNNNGTG	1 cut(s)	749
DriI	GACNNNNNGTC	1 cut(s)	1260
EaeI	YGGCCR	2 cut(s)	594, 2101
Eam1104I	CTCTTC	8 cut(s)	26, 407, 515, 718, 919, 2130, 2202, 2502
Eam1105I	GACNNNNNGTC	1 cut(s)	1260
EarI	CTCTTC	8 cut(s)	26, 407, 515, 718, 919, 2130, 2202, 2502
Eco130I	CCWWGG	4 cut(s)	83, 619, 1643, 2250
Eco24I	GRGCYC	1 cut(s)	2747
Eco31I	GGTCTC	2 cut(s)	639, 1247
Eco32I	GATATC	1 cut(s)	2921
Eco47I	GGWCC	3 cut(s)	1727, 2325, 2548
Eco57I	CTGAAG	3 cut(s)	1335, 2226, 2909
Eco81I	CCTNAGG	1 cut(s)	2756
EcoNI	CCTNNNNNAGG	2 cut(s)	2074, 2933
EcoO109I	RGGNCCY	1 cut(s)	2548
EcoRII	CCWGG	2 cut(s)	1695, 2850
EcoRV	GATATC	1 cut(s)	2921
EcoT14I	CCWWGG	4 cut(s)	83, 619, 1643, 2250
EcoT22I	ATGCAT	1 cut(s)	868
EcoT38I	GRGCYC	1 cut(s)	2747
ErhI	CCWWGG	4 cut(s)	83, 619, 1643, 2250
Esp3I	CGTCTC	2 cut(s)	99, 174
FalI	AAGNNNNNCTT	4 cut(s)	266, 298, 1636, 1668
FauNDI	CATATG	1 cut(s)	1947
FbaI	TGATCA	6 cut(s)	145, 679, 1057, 2014, 2395, 2538
FblI	GTMKAC	1 cut(s)	1406
FokI	GGATG	6 cut(s)	653, 1439, 2180, 2369, 2396, 2407
FriOI	GRGCYC	1 cut(s)	2747
FspBI	CTAG	6 cut(s)	789, 1107, 1374, 1530, 2129, 2793
GlaI	GCGC	2 cut(s)	258, 2296
GsaI	CCCAGC	1 cut(s)	2750
GsuI	CTGGAG	2 cut(s)	1421, 2685
HaeIII	GGCC	4 cut(s)	88, 596, 1461, 2103
HapII	CCGG	5 cut(s)	28, 218, 437, 545, 1906
HgaI	GACGC	2 cut(s)	141, 753
HhaI	GCGC	2 cut(s)	259, 2297
Hin6I	GCGC	2 cut(s)	257, 2295
HinP1I	GCGC	2 cut(s)	257, 2295
HincII	GTYRAC	2 cut(s)	1650, 2871
HindII	GTYRAC	2 cut(s)	1650, 2871
HindIII	AAGCTT	3 cut(s)	1623, 1890, 2430
HpaII	CCGG	5 cut(s)	28, 218, 437, 545, 1906
HphI	GGTGA	9 cut(s)	155, 686, 735, 950, 1084, 2167, 2685, 2744, 2814
Hpy166II	GTNNAC	4 cut(s)	1407, 1650, 2049, 2871
Hpy188I	TCNGA	7 cut(s)	769, 927, 1384, 2233, 2479, 2907, 2918
Hpy8I	GTNNAC	4 cut(s)	1407, 1650, 2049, 2871
HpyAV	CCTTC	8 cut(s)	786, 972, 1055, 1248, 1567, 2047, 2890, 2938
HpyCH4III	ACNGT	7 cut(s)	706, 814, 844, 900, 1165, 1758, 2951
HpyCH4IV	ACGT	1 cut(s)	700
HpyF10VI	GCNNNNNNNGC	7 cut(s)	362, 725, 833, 1028, 1574, 1583, 1592
HpySE526I	ACGT	1 cut(s)	700
HspAI	GCGC	2 cut(s)	257, 2295
Ksp22I	TGATCA	6 cut(s)	145, 679, 1057, 2014, 2395, 2538
LguI	GCTCTTC	1 cut(s)	919
LmnI	GCTCC	3 cut(s)	1516, 2146, 2742
LweI	GCATC	5 cut(s)	1111, 2056, 2202, 2457, 2540
MaeI	CTAG	6 cut(s)	789, 1107, 1374, 1530, 2129, 2793
MaeII	ACGT	1 cut(s)	700
MaeIII	GTNAC	7 cut(s)	260, 706, 1138, 1490, 2563, 2653, 2951
MfeI	CAATTG	3 cut(s)	777, 1410, 1671
MflI	RGATCY	4 cut(s)	1503, 1559, 1852, 2221
MhlI	GDGCHC	1 cut(s)	2747
MlsI	TGGCCA	2 cut(s)	596, 2103
MluNI	TGGCCA	2 cut(s)	596, 2103
MlyI	GAGTC	4 cut(s)	125, 212, 1412, 1925
MmeI	TCCRAC	6 cut(s)	157, 1159, 2145, 2256, 2796, 2885
Mox20I	TGGCCA	2 cut(s)	596, 2103
Mph1103I	ATGCAT	1 cut(s)	868
MroXI	GAANNNNTTC	2 cut(s)	1044, 2057
MscI	TGGCCA	2 cut(s)	596, 2103
MslI	CAYNNNNRTG	4 cut(s)	494, 845, 879, 2109
Msp20I	TGGCCA	2 cut(s)	596, 2103
MspA1I	CMGCKG	5 cut(s)	1250, 1766, 1961, 2270, 2705
MspCI	CTTAAG	2 cut(s)	1421, 2777
MspI	CCGG	5 cut(s)	28, 218, 437, 545, 1906
MspR9I	CCNGG	3 cut(s)	1697, 1906, 2852
MunI	CAATTG	3 cut(s)	777, 1410, 1671
Mva1269I	GAATGC	1 cut(s)	766
MvaI	CCWGG	2 cut(s)	1697, 2852
MvnI	CGCG	1 cut(s)	259
MwoI	GCNNNNNNNGC	7 cut(s)	362, 725, 833, 1028, 1574, 1583, 1592
NciI	CCSGG	1 cut(s)	1906
NcoI	CCATGG	2 cut(s)	83, 619
NdeI	CATATG	1 cut(s)	1947
NlaIV	GGNNCC	5 cut(s)	729, 807, 1854, 2549, 2744
NmeAIII	GCCGAG	2 cut(s)	233, 1504
NmuCI	GTSAC	3 cut(s)	260, 1138, 2951
NsiI	ATGCAT	1 cut(s)	868
NspI	RCATGY	2 cut(s)	68, 1223
PagI	TCATGA	2 cut(s)	2017, 2463
PaqCI	CACCTGC	1 cut(s)	841
PciI	ACATGT	1 cut(s)	64
PciSI	GCTCTTC	1 cut(s)	919
PctI	GAATGC	1 cut(s)	766
PdmI	GAANNNNTTC	2 cut(s)	1044, 2057
PfoI	TCCNGGA	1 cut(s)	1904
PleI	GAGTC	4 cut(s)	124, 211, 1411, 1924
PpsI	GAGTC	4 cut(s)	124, 211, 1411, 1924
Ppu21I	YACGTR	1 cut(s)	701
PpuMI	RGGWCCY	1 cut(s)	2548
PscI	ACATGT	1 cut(s)	64
PshBI	ATTAAT	2 cut(s)	450, 1607
Psp5II	RGGWCCY	1 cut(s)	2548
Psp6I	CCWGG	2 cut(s)	1695, 2850
PspFI	CCCAGC	1 cut(s)	2746
PspGI	CCWGG	2 cut(s)	1695, 2850
PspN4I	GGNNCC	5 cut(s)	729, 807, 1854, 2549, 2744
PspPI	GGNCC	4 cut(s)	87, 1727, 2325, 2548
PspPPI	RGGWCCY	1 cut(s)	2548
PsrI	GAACNNNNNNTAC	4 cut(s)	798, 830, 1582, 1614
PstI	CTGCAG	1 cut(s)	1960
PstNI	CAGNNNCTG	4 cut(s)	833, 2651, 2708, 2955
PsuI	RGATCY	4 cut(s)	1503, 1559, 1852, 2221
PvuII	CAGCTG	4 cut(s)	1250, 1961, 2270, 2705
RsaI	GTAC	5 cut(s)	230, 703, 816, 1207, 1801
RsaNI	GTAC	5 cut(s)	229, 702, 815, 1206, 1800
RseI	CAYNNNNRTG	4 cut(s)	494, 845, 879, 2109
SapI	GCTCTTC	1 cut(s)	919
Sau96I	GGNCC	4 cut(s)	87, 1727, 2325, 2548
ScaI	AGTACT	1 cut(s)	1207
SchI	GAGTC	4 cut(s)	125, 212, 1412, 1925
ScrFI	CCNGG	3 cut(s)	1697, 1906, 2852
SduI	GDGCHC	1 cut(s)	2747
SfaNI	GCATC	5 cut(s)	1111, 2056, 2202, 2457, 2540
SfcI	CTRYAG	1 cut(s)	1956
SinI	GGWCC	3 cut(s)	1727, 2325, 2548
SmiMI	CAYNNNNRTG	4 cut(s)	494, 845, 879, 2109
SmlI	CTYRAG	5 cut(s)	1421, 1563, 1713, 1972, 2777
SmoI	CTYRAG	5 cut(s)	1421, 1563, 1713, 1972, 2777
SpeI	ACTAGT	1 cut(s)	2792
SsiI	CCGC	3 cut(s)	41, 1442, 1766
SspI	AATATT	1 cut(s)	1082
SspMI	CTAG	6 cut(s)	789, 1107, 1374, 1530, 2129, 2793
StyD4I	CCNGG	3 cut(s)	1695, 1904, 2850
StyI	CCWWGG	4 cut(s)	83, 619, 1643, 2250
TaaI	ACNGT	7 cut(s)	706, 814, 844, 900, 1165, 1758, 2951
TaiI	ACGT	1 cut(s)	703
TaqI	TCGA	3 cut(s)	307, 1664, 2092
TatI	WGTACW	2 cut(s)	228, 1205
TauI	GCSGC	1 cut(s)	1445
TscAI	CASTG	8 cut(s)	405, 513, 847, 903, 984, 2398, 2778, 2956
TseFI	GTSAC	3 cut(s)	260, 1138, 2951
Tsp45I	GTSAC	3 cut(s)	260, 1138, 2951
TspGWI	ACGGA	2 cut(s)	2426, 2921
TspRI	CASTG	8 cut(s)	405, 513, 847, 903, 984, 2398, 2778, 2956
Vha464I	CTTAAG	2 cut(s)	1421, 2777
VpaK11BI	GGWCC	3 cut(s)	1727, 2325, 2548
VspI	ATTAAT	2 cut(s)	450, 1607
XagI	CCTNNNNNAGG	2 cut(s)	2074, 2933
XapI	RAATTY	2 cut(s)	194, 2845
XbaI	TCTAGA	1 cut(s)	1529
XceI	RCATGY	2 cut(s)	68, 1223
XcmI	CCANNNNNNNNNTGG	2 cut(s)	626, 2889
XmiI	GTMKAC	1 cut(s)	1406
XmnI	GAANNNNTTC	2 cut(s)	1044, 2057
XspI	CTAG	6 cut(s)	789, 1107, 1374, 1530, 2129, 2793
ZrmI	AGTACT	1 cut(s)	1207
Zsp2I	ATGCAT	1 cut(s)	868

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.