Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030098.1

Orthogroup ID

OG0003470

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1302

Gene Structure 1302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030098.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 751 bp

agagatgcccacagatcccgtgtccgaccctataagtgattccaaggttctccctattccagctggaaaatcaagttttggcgcaggtgcacagctaaaaaatgcgattggaagctggtccagatggctgactgatctatttggtatggatgatactgatgttccagacgatgaggatgaactcagtgatcacaaggggcaggagagtgaaacatcctttaaagctttccgtcttctcaatgctttgagtgatctcatgatgcttccatctgaaatgcttgcagataaatccaccagagaagaggtatgccctacattcggtgcatcaatgatcaagagggtcctttacaattttgttacagatgagttttgcccagacccgattcccgaagcagtttttgaggctcttgacaatgaggagaatctggaagctgaaacagaatctgttacaagtttcccatttattgcaaatcccacattttattcaccacctccagctgctgcttctctatcaggcattacaggagaggtggggagcccagctcacctaaggagtgggtcatcagtgcttaagaaatcatatactagtgatgatgagcttgatgagttggattcaccgatgacatcaatcgtagaaaattcccaggtttcccccaagtcgttgacagccaacccaatgctgaagtggaagggtggtcggaaagttgtccgatatcaactcctccgtcaggtttggaaggacagtgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NT-C2

Protein Analysis

249

Amino Acids

27.28

Weight (kDa)

4.4

Isoelectric Point (pI)

43.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003470)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g24100 FvH4_4g24100 FvH4_4g24100
malus_domestica	MD13G1115500.v1.1 MD16G1115400.v1.1
prunus_persica	Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1
pyrus_communis	pycom13g10000 pycom16g09790
rosa_chinensis	RchiOBHm_Chr4g0430881
rosa_laevigata	RLG00000006942
rosa_multiflora	Rmu_sc0006263.1_g000008 Rmu_sc0030097.1_g000001 Rmu_sc0030098.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372570
rosa_rugosa	Rorug04G0246700 Rorug04G0246800 Rorug04G0246900 Rorug04G0247000
rosa_samantha	Rh4AG302500 Rh4AG303400 Rh4BG310600 Rh4CG327000 Rh4DG306800
rosa_wichuraiana	Rw4G026290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	75
Acc36I	ACCTGC	1 cut(s)	75
AclWI	GGATC	1 cut(s)	9
AcsI	RAATTY	1 cut(s)	638
AcuI	CTGAAG	1 cut(s)	702
AfiI	CCNNNNNNNGG	2 cut(s)	318, 728
AflII	CTTAAG	1 cut(s)	570
AhlI	ACTAGT	1 cut(s)	585
AjnI	CCWGG	1 cut(s)	643
AluBI	AGCT	8 cut(s)	63, 95, 115, 225, 432, 498, 543, 599
AluI	AGCT	8 cut(s)	63, 95, 115, 225, 432, 498, 543, 599
Alw21I	GWGCWC	1 cut(s)	92
Alw44I	GTGCAC	1 cut(s)	88
AlwI	GGATC	1 cut(s)	9
AlwNI	CAGNNNCTG	3 cut(s)	444, 501, 748
ApaLI	GTGCAC	1 cut(s)	88
ApeKI	GCWGC	2 cut(s)	498, 501
ApoI	RAATTY	1 cut(s)	638
AspLEI	GCGC	1 cut(s)	84
AspS9I	GGNCC	2 cut(s)	118, 341
AsuHPI	GGTGA	3 cut(s)	478, 537, 607
AvaII	GGWCC	2 cut(s)	118, 341
AxyI	CCTNAGG	1 cut(s)	549
BaeGI	GKGCMC	1 cut(s)	92
BaeI	ACNNNNGTAYC	2 cut(s)	145, 178
BanII	GRGCYC	1 cut(s)	540
BbsI	GAAGAC	1 cut(s)	225
Bbv12I	GWGCWC	1 cut(s)	92
BbvI	GCAGC	2 cut(s)	485, 488
BccI	CCATC	2 cut(s)	118, 275
BciT130I	CCWGG	1 cut(s)	645
BclI	TGATCA	2 cut(s)	188, 331
BcuI	ACTAGT	1 cut(s)	585
BfaI	CTAG	1 cut(s)	586
BfrI	CTTAAG	1 cut(s)	570
BfuAI	ACCTGC	1 cut(s)	75
BisI	GCNGC	2 cut(s)	499, 502
BlsI	GCNGC	2 cut(s)	500, 503
Bme1390I	CCNGG	1 cut(s)	645
Bme18I	GGWCC	2 cut(s)	118, 341
BmgT120I	GGNCC	2 cut(s)	118, 341
BmiI	GGNNCC	2 cut(s)	342, 537
BmrFI	CCNGG	1 cut(s)	645
BmsI	GCATC	2 cut(s)	250, 333
BpiI	GAAGAC	1 cut(s)	225
BplI	GAGNNNNNCTC	2 cut(s)	527, 559
BpmI	CTGGAG	1 cut(s)	478
BsaJI	CCNNGG	2 cut(s)	43, 643
Bsc4I	CCNNNNNNNGG	2 cut(s)	318, 728
Bse21I	CCTNAGG	1 cut(s)	549
BseBI	CCWGG	1 cut(s)	645
BseDI	CCNNGG	2 cut(s)	43, 643
BseGI	GGATG	3 cut(s)	155, 182, 213
BseLI	CCNNNNNNNGG	2 cut(s)	318, 728
BseMII	CTCAG	1 cut(s)	197
BseRI	GAGGAG	2 cut(s)	432, 711
BseSI	GKGCMC	1 cut(s)	92
BseXI	GCAGC	2 cut(s)	485, 488
BseYI	CCCAGC	1 cut(s)	539
BsiHKAI	GWGCWC	1 cut(s)	92
BslI	CCNNNNNNNGG	2 cut(s)	318, 728
Bsp1286I	GDGCHC	2 cut(s)	92, 540
Bsp143I	GATC	5 cut(s)	14, 134, 188, 251, 331
BspCNI	CTCAG	1 cut(s)	196
BspHI	TCATGA	1 cut(s)	256
BspLI	GGNNCC	2 cut(s)	342, 537
BspMI	ACCTGC	1 cut(s)	75
BspPI	GGATC	1 cut(s)	9
BspTI	CTTAAG	1 cut(s)	570
BssECI	CCNNGG	2 cut(s)	43, 643
BssMI	GATC	5 cut(s)	14, 134, 188, 251, 331
BssT1I	CCWWGG	1 cut(s)	43
Bst2UI	CCWGG	1 cut(s)	645
Bst4CI	ACNGT	1 cut(s)	744
Bst6I	CTCTTC	1 cut(s)	295
BstAFI	CTTAAG	1 cut(s)	570
BstC8I	GCNNGC	1 cut(s)	280
BstDEI	CTNAG	2 cut(s)	183, 549
BstENI	CCTNNNNNAGG	1 cut(s)	726
BstF5I	GGATG	3 cut(s)	155, 182, 213
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	5 cut(s)	17, 137, 191, 254, 334
BstMBI	GATC	5 cut(s)	14, 134, 188, 251, 331
BstNI	CCWGG	1 cut(s)	645
BstSCI	CCNGG	1 cut(s)	643
BstSLI	GKGCMC	1 cut(s)	92
BstV1I	GCAGC	2 cut(s)	485, 488
BstV2I	GAAGAC	1 cut(s)	225
BstX2I	RGATCY	1 cut(s)	14
BstYI	RGATCY	1 cut(s)	14
Bsu36I	CCTNAGG	1 cut(s)	549
BtsCI	GGATG	3 cut(s)	155, 182, 213
BtsIMutI	CAGTG	3 cut(s)	191, 571, 749
BveI	ACCTGC	1 cut(s)	75
Cac8I	GCNNGC	1 cut(s)	280
CaiI	CAGNNNCTG	3 cut(s)	444, 501, 748
CciI	TCATGA	1 cut(s)	256
CfoI	GCGC	1 cut(s)	84
Cfr13I	GGNCC	2 cut(s)	118, 341
CviAII	CATG	1 cut(s)	257
DdeI	CTNAG	2 cut(s)	183, 549
DpnI	GATC	5 cut(s)	16, 136, 190, 253, 333
DpnII	GATC	5 cut(s)	14, 134, 188, 251, 331
DraI	TTTAAA	1 cut(s)	221
Eam1104I	CTCTTC	1 cut(s)	295
EarI	CTCTTC	1 cut(s)	295
Eco130I	CCWWGG	1 cut(s)	43
Eco24I	GRGCYC	1 cut(s)	540
Eco32I	GATATC	1 cut(s)	714
Eco47I	GGWCC	2 cut(s)	118, 341
Eco57I	CTGAAG	1 cut(s)	702
Eco81I	CCTNAGG	1 cut(s)	549
EcoNI	CCTNNNNNAGG	1 cut(s)	726
EcoO109I	RGGNCCY	1 cut(s)	341
EcoRII	CCWGG	1 cut(s)	643
EcoRV	GATATC	1 cut(s)	714
EcoT14I	CCWWGG	1 cut(s)	43
EcoT38I	GRGCYC	1 cut(s)	540
ErhI	CCWWGG	1 cut(s)	43
FaeI	CATG	1 cut(s)	260
FaiI	YATR	6 cut(s)	33, 147, 258, 308, 581, 583
FatI	CATG	1 cut(s)	256
FbaI	TGATCA	2 cut(s)	188, 331
Fnu4HI	GCNGC	2 cut(s)	499, 502
FokI	GGATG	3 cut(s)	162, 189, 200
FriOI	GRGCYC	1 cut(s)	540
Fsp4HI	GCNGC	2 cut(s)	499, 502
FspBI	CTAG	1 cut(s)	586
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	2 cut(s)	499, 502
GsaI	CCCAGC	1 cut(s)	543
GsuI	CTGGAG	1 cut(s)	478
HhaI	GCGC	1 cut(s)	84
Hin1II	CATG	1 cut(s)	260
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HincII	GTYRAC	1 cut(s)	664
HindII	GTYRAC	1 cut(s)	664
HindIII	AAGCTT	1 cut(s)	223
HinfI	GANTC	5 cut(s)	39, 383, 422, 441, 612
HphI	GGTGA	3 cut(s)	478, 537, 607
Hpy166II	GTNNAC	2 cut(s)	90, 664
Hpy188I	TCNGA	4 cut(s)	26, 272, 700, 711
Hpy188III	TCNNGA	7 cut(s)	121, 165, 257, 335, 387, 408, 426
Hpy8I	GTNNAC	2 cut(s)	90, 664
HpyAV	CCTTC	2 cut(s)	683, 731
HpyCH4III	ACNGT	1 cut(s)	744
HpyCH4V	TGCA	4 cut(s)	90, 282, 324, 468
HpyF3I	CTNAG	2 cut(s)	183, 549
Hsp92II	CATG	1 cut(s)	260
HspAI	GCGC	1 cut(s)	82
Ksp22I	TGATCA	2 cut(s)	188, 331
Kzo9I	GATC	5 cut(s)	14, 134, 188, 251, 331
LmnI	GCTCC	1 cut(s)	535
Lsp1109I	GCAGC	2 cut(s)	485, 488
LweI	GCATC	2 cut(s)	250, 333
MaeI	CTAG	1 cut(s)	586
MaeIII	GTNAC	3 cut(s)	356, 446, 744
MalI	GATC	5 cut(s)	16, 136, 190, 253, 333
MboI	GATC	5 cut(s)	14, 134, 188, 251, 331
MboII	GAAGA	2 cut(s)	225, 312
MflI	RGATCY	1 cut(s)	14
MhlI	GDGCHC	2 cut(s)	92, 540
MluCI	AATT	2 cut(s)	350, 638
MmeI	TCCRAC	3 cut(s)	49, 589, 678
MnlI	CCTC	8 cut(s)	167, 296, 331, 395, 410, 502, 521, 732
MseI	TTAA	2 cut(s)	220, 571
MspA1I	CMGCKG	2 cut(s)	63, 498
MspCI	CTTAAG	1 cut(s)	570
MspR9I	CCNGG	1 cut(s)	645
MvaI	CCWGG	1 cut(s)	645
NdeII	GATC	5 cut(s)	14, 134, 188, 251, 331
NlaIII	CATG	1 cut(s)	260
NlaIV	GGNNCC	2 cut(s)	342, 537
NmuCI	GTSAC	1 cut(s)	744
PagI	TCATGA	1 cut(s)	256
PaqCI	CACCTGC	1 cut(s)	75
PfeI	GAWTC	5 cut(s)	39, 383, 422, 441, 612
PkrI	GCNGC	2 cut(s)	500, 503
PpuMI	RGGWCCY	1 cut(s)	341
Psp5II	RGGWCCY	1 cut(s)	341
Psp6I	CCWGG	1 cut(s)	643
PspFI	CCCAGC	1 cut(s)	539
PspGI	CCWGG	1 cut(s)	643
PspN4I	GGNNCC	2 cut(s)	342, 537
PspPI	GGNCC	2 cut(s)	118, 341
PspPPI	RGGWCCY	1 cut(s)	341
PstNI	CAGNNNCTG	3 cut(s)	444, 501, 748
PsuI	RGATCY	1 cut(s)	14
PvuII	CAGCTG	2 cut(s)	63, 498
SaqAI	TTAA	2 cut(s)	220, 571
SatI	GCNGC	2 cut(s)	499, 502
Sau3AI	GATC	5 cut(s)	14, 134, 188, 251, 331
Sau96I	GGNCC	2 cut(s)	118, 341
ScrFI	CCNGG	1 cut(s)	645
SduI	GDGCHC	2 cut(s)	92, 540
SfaNI	GCATC	2 cut(s)	250, 333
SinI	GGWCC	2 cut(s)	118, 341
SmlI	CTYRAG	1 cut(s)	570
SmoI	CTYRAG	1 cut(s)	570
SpeI	ACTAGT	1 cut(s)	585
Sse9I	AATT	2 cut(s)	350, 638
SspMI	CTAG	1 cut(s)	586
StyD4I	CCNGG	1 cut(s)	643
StyI	CCWWGG	1 cut(s)	43
TaaI	ACNGT	1 cut(s)	744
TasI	AATT	2 cut(s)	350, 638
TfiI	GAWTC	5 cut(s)	39, 383, 422, 441, 612
Tru1I	TTAA	2 cut(s)	220, 571
Tru9I	TTAA	2 cut(s)	220, 571
TscAI	CASTG	3 cut(s)	191, 571, 749
TseFI	GTSAC	1 cut(s)	744
TseI	GCWGC	2 cut(s)	498, 501
Tsp45I	GTSAC	1 cut(s)	744
TspDTI	ATGAA	1 cut(s)	193
TspGWI	ACGGA	2 cut(s)	219, 714
TspRI	CASTG	3 cut(s)	191, 571, 749
Vha464I	CTTAAG	1 cut(s)	570
VneI	GTGCAC	1 cut(s)	88
VpaK11BI	GGWCC	2 cut(s)	118, 341
XagI	CCTNNNNNAGG	1 cut(s)	726
XapI	RAATTY	1 cut(s)	638
XcmI	CCANNNNNNNNNTGG	1 cut(s)	682
XspI	CTAG	1 cut(s)	586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.