Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003470

Physical Location & Seq

Genomic Coordinates Forward (+)

41711362 .. 41712503

Gene Structure 1142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0246700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCTACCACGACAGTCAAGTGCGCGGCTGCACTTCTTTGTTTACAACTGGAGGCCAGGGATGACTTCCAAATCACTCTTCGAATTCTTGAATCTGTTGCCGAGGAGTCTCTTGTAATTCTCAAAAGCCCTGATATTTTTACCCGTGAGGTTCTCCCCAGTTTGGCTGTTCTGTATAAGGGCAACAAGGATGGTGATGCCAGTGGTGATCAGCAGCAACGTATAAGAGATATCATGGACTTTGAGAGCAATGTTGCTGTATTGCTAGAGTTAAGTAGGTTTCACAGAGGAAGTGTGGCAGATGTAGGTTTAGAATGTGTTGTTTTGTTGCTCAGGGCAGCTCCAAGGGAAGGCACAGCTGGTCTACTAACTAATCTTCCAAAAGCTACTGCAATGCTTGAGTCTTGGCTTGGAGCATATCTCATTTGTCGGTGCAGGAGTGCTACATGCACTTGGTTATGGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NT-C2

Protein Analysis

155

Amino Acids

17.07

Weight (kDa)

5.19

Isoelectric Point (pI)

41.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HEAT_ULK4	PF23606	18 - 67	9.9e-10	Serine/threonine-protein kinase ULK4-like, HEAT repeats
ARM_RUK	PF24970	56 - 137	7.9e-24	RUNKEL ARM-repeat domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003470)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g24100 FvH4_4g24100 FvH4_4g24100
malus_domestica	MD13G1115500.v1.1 MD16G1115400.v1.1
prunus_persica	Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1
pyrus_communis	pycom13g10000 pycom16g09790
rosa_chinensis	RchiOBHm_Chr4g0430881
rosa_laevigata	RLG00000006942
rosa_multiflora	Rmu_sc0006263.1_g000008 Rmu_sc0030097.1_g000001 Rmu_sc0030098.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372570
rosa_rugosa	Rorug04G0246700 Rorug04G0246800 Rorug04G0246900 Rorug04G0247000
rosa_samantha	Rh4AG302500 Rh4AG303400 Rh4BG310600 Rh4CG327000 Rh4DG306800
rosa_wichuraiana	Rw4G026290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	364
AccII	CGCG	1 cut(s)	26
AciI	CCGC	1 cut(s)	26
AcsI	RAATTY	1 cut(s)	84
AfiI	CCNNNNNNNGG	2 cut(s)	163, 350
AgsI	TTSAA	1 cut(s)	92
AjnI	CCWGG	1 cut(s)	56
AjuI	GAANNNNNNNTTGG	2 cut(s)	63, 95
AluBI	AGCT	3 cut(s)	341, 359, 386
AluI	AGCT	3 cut(s)	341, 359, 386
Alw26I	GTCTC	1 cut(s)	114
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	3 cut(s)	29, 214, 338
ApoI	RAATTY	1 cut(s)	84
AspLEI	GCGC	1 cut(s)	26
AsuHPI	GGTGA	2 cut(s)	206, 218
AsuII	TTCGAA	1 cut(s)	82
BbvI	GCAGC	3 cut(s)	16, 226, 350
BccI	CCATC	1 cut(s)	185
BciT130I	CCWGG	1 cut(s)	58
BclI	TGATCA	1 cut(s)	208
BcoDI	GTCTC	1 cut(s)	114
BfaI	CTAG	1 cut(s)	266
BfmI	CTRYAG	1 cut(s)	464
BisI	GCNGC	4 cut(s)	27, 30, 215, 339
BlsI	GCNGC	4 cut(s)	28, 31, 216, 340
Bme1390I	CCNGG	1 cut(s)	58
BmrFI	CCNGG	1 cut(s)	58
BmrI	ACTGGG	1 cut(s)	153
BmsI	GCATC	1 cut(s)	187
BmuI	ACTGGG	1 cut(s)	153
BplI	GAGNNNNNCTC	2 cut(s)	405, 437
BpmI	CTGGAG	1 cut(s)	71
Bpu10I	CCTNAGC	1 cut(s)	332
Bpu14I	TTCGAA	1 cut(s)	82
BpuEI	CTTGAG	1 cut(s)	419
BsaJI	CCNNGG	3 cut(s)	57, 102, 344
Bsc4I	CCNNNNNNNGG	2 cut(s)	163, 350
Bse1I	ACTGG	3 cut(s)	54, 159, 201
Bse3DI	GCAATG	2 cut(s)	256, 399
BseBI	CCWGG	1 cut(s)	58
BseDI	CCNNGG	3 cut(s)	57, 102, 344
BseGI	GGATG	2 cut(s)	67, 196
BseLI	CCNNNNNNNGG	2 cut(s)	163, 350
BseMI	GCAATG	2 cut(s)	256, 399
BseMII	CTCAG	1 cut(s)	346
BseNI	ACTGG	3 cut(s)	54, 159, 201
BseRI	GAGGAG	1 cut(s)	119
BseXI	GCAGC	3 cut(s)	16, 226, 350
BsgI	GTGCAG	2 cut(s)	15, 454
Bsh1236I	CGCG	1 cut(s)	26
BshFI	GGCC	1 cut(s)	56
BslI	CCNNNNNNNGG	2 cut(s)	163, 350
BsmAI	GTCTC	1 cut(s)	114
BsnI	GGCC	1 cut(s)	56
Bsp119I	TTCGAA	1 cut(s)	82
Bsp143I	GATC	1 cut(s)	208
BspACI	CCGC	1 cut(s)	26
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	1 cut(s)	345
BspFNI	CGCG	1 cut(s)	26
BspT104I	TTCGAA	1 cut(s)	82
BsrDI	GCAATG	2 cut(s)	256, 399
BsrI	ACTGG	3 cut(s)	54, 159, 201
BssECI	CCNNGG	3 cut(s)	57, 102, 344
BssMI	GATC	1 cut(s)	208
BssT1I	CCWWGG	1 cut(s)	344
Bst2UI	CCWGG	1 cut(s)	58
Bst4CI	ACNGT	1 cut(s)	16
Bst6I	CTCTTC	1 cut(s)	84
BstBI	TTCGAA	1 cut(s)	82
BstDEI	CTNAG	1 cut(s)	332
BstF5I	GGATG	2 cut(s)	67, 196
BstFNI	CGCG	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	1 cut(s)	211
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	1 cut(s)	208
BstNI	CCWGG	1 cut(s)	58
BstNSI	RCATGY	1 cut(s)	450
BstSCI	CCNGG	1 cut(s)	56
BstSFI	CTRYAG	1 cut(s)	464
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	3 cut(s)	16, 226, 350
BsuRI	GGCC	1 cut(s)	56
BtsCI	GGATG	2 cut(s)	67, 196
BtsIMutI	CAGTG	1 cut(s)	208
CfoI	GCGC	1 cut(s)	26
CviAII	CATG	2 cut(s)	235, 447
DdeI	CTNAG	1 cut(s)	332
DpnI	GATC	1 cut(s)	210
DpnII	GATC	1 cut(s)	208
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Eco130I	CCWWGG	1 cut(s)	344
Eco32I	GATATC	1 cut(s)	232
EcoRI	GAATTC	1 cut(s)	84
EcoRII	CCWGG	1 cut(s)	56
EcoRV	GATATC	1 cut(s)	232
EcoT14I	CCWWGG	1 cut(s)	344
ErhI	CCWWGG	1 cut(s)	344
FaeI	CATG	2 cut(s)	238, 450
FaiI	YATR	6 cut(s)	177, 224, 236, 418, 448, 460
FatI	CATG	2 cut(s)	234, 446
FbaI	TGATCA	1 cut(s)	208
FblI	GTMKAC	1 cut(s)	364
Fnu4HI	GCNGC	4 cut(s)	27, 30, 215, 339
FokI	GGATG	2 cut(s)	74, 203
Fsp4HI	GCNGC	4 cut(s)	27, 30, 215, 339
FspBI	CTAG	1 cut(s)	266
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	4 cut(s)	27, 30, 215, 339
GsuI	CTGGAG	1 cut(s)	71
HaeIII	GGCC	1 cut(s)	56
HhaI	GCGC	1 cut(s)	26
Hin1II	CATG	2 cut(s)	238, 450
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HinfI	GANTC	3 cut(s)	92, 107, 401
HphI	GGTGA	2 cut(s)	206, 218
Hpy166II	GTNNAC	2 cut(s)	44, 365
Hpy188III	TCNNGA	1 cut(s)	89
Hpy8I	GTNNAC	2 cut(s)	44, 365
HpyAV	CCTTC	1 cut(s)	344
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4IV	ACGT	1 cut(s)	220
HpyCH4V	TGCA	4 cut(s)	32, 392, 435, 450
HpyF3I	CTNAG	1 cut(s)	332
HpySE526I	ACGT	1 cut(s)	220
Hsp92II	CATG	2 cut(s)	238, 450
HspAI	GCGC	1 cut(s)	24
Ksp22I	TGATCA	1 cut(s)	208
Kzo9I	GATC	1 cut(s)	208
LmnI	GCTCC	2 cut(s)	346, 413
LpnPI	CCDG	9 cut(s)	35, 43, 70, 144, 172, 214, 319, 345, 421
Lsp1109I	GCAGC	3 cut(s)	16, 226, 350
LweI	GCATC	1 cut(s)	187
MaeI	CTAG	1 cut(s)	266
MaeII	ACGT	1 cut(s)	220
MalI	GATC	1 cut(s)	210
MboI	GATC	1 cut(s)	208
MboII	GAAGA	2 cut(s)	71, 368
MluCI	AATT	2 cut(s)	84, 117
MlyI	GAGTC	2 cut(s)	116, 410
MnlI	CCTC	4 cut(s)	46, 97, 142, 281
MseI	TTAA	1 cut(s)	272
MspA1I	CMGCKG	1 cut(s)	359
MspR9I	CCNGG	1 cut(s)	58
MvaI	CCWGG	1 cut(s)	58
MvnI	CGCG	1 cut(s)	26
NdeII	GATC	1 cut(s)	208
NlaIII	CATG	2 cut(s)	238, 450
NmeAIII	GCCGAG	1 cut(s)	127
NspI	RCATGY	1 cut(s)	450
NspV	TTCGAA	1 cut(s)	82
PfeI	GAWTC	1 cut(s)	92
PkrI	GCNGC	4 cut(s)	28, 31, 216, 340
PleI	GAGTC	2 cut(s)	115, 409
PpsI	GAGTC	2 cut(s)	115, 409
Psp6I	CCWGG	1 cut(s)	56
PspGI	CCWGG	1 cut(s)	56
PvuII	CAGCTG	1 cut(s)	359
SaqAI	TTAA	1 cut(s)	272
SatI	GCNGC	4 cut(s)	27, 30, 215, 339
Sau3AI	GATC	1 cut(s)	208
SchI	GAGTC	2 cut(s)	116, 410
ScrFI	CCNGG	1 cut(s)	58
SetI	ASST	7 cut(s)	153, 223, 281, 310, 343, 361, 388
SfaNI	GCATC	1 cut(s)	187
SfcI	CTRYAG	1 cut(s)	464
SfuI	TTCGAA	1 cut(s)	82
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	2 cut(s)	84, 117
SsiI	CCGC	1 cut(s)	26
SspMI	CTAG	1 cut(s)	266
StyD4I	CCNGG	1 cut(s)	56
StyI	CCWWGG	1 cut(s)	344
TaaI	ACNGT	1 cut(s)	16
TaiI	ACGT	1 cut(s)	223
TaqI	TCGA	1 cut(s)	82
TasI	AATT	2 cut(s)	84, 117
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	1 cut(s)	92
Tru1I	TTAA	1 cut(s)	272
Tru9I	TTAA	1 cut(s)	272
TscAI	CASTG	1 cut(s)	208
TseI	GCWGC	3 cut(s)	29, 214, 338
TspRI	CASTG	1 cut(s)	208
XapI	RAATTY	1 cut(s)	84
XceI	RCATGY	1 cut(s)	450
XmiI	GTMKAC	1 cut(s)	364
XspI	CTAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.