Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003470

Physical Location & Seq

Genomic Coordinates Forward (+)

41740671 .. 41741416

Gene Structure 746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0246900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGTTCATCATTAGAATGGCCTCTTTTTGGTTCCATATAGTGCTCATTATGGCCTTCATGGTCTCACCTCTGCTTTCCTTTACTTCAAAAGCATCTACTATCACAGCCTCACCTGCATTGTTCACTACTCCTCATCCATCTTCTGTCCAAGGTTTGCCTCCAGATATAGCTCCACTTTTGCCATCTGCTGGTCCTGTGGTGCCTAATACTCCAGCTGATAACTCCATACCCACCATTCCTTCCAATCCAAGCCCTCCGAATCCGGATGAATCGGCTTCACTCGGACCTTCTTCTGCATTTTCGCCTTTGCCGGCGTCCTCAGCCACATCTACAGACTTATTTTGGACTTTAAACTTGGCCGCTTTTGCAGGTGCGGCAGCTTACGTATTGGTCTCTGCAGCTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NT-C2

Protein Analysis

135

Amino Acids

13.84

Weight (kDa)

4.72

Isoelectric Point (pI)

50.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003470)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g24100 FvH4_4g24100 FvH4_4g24100
malus_domestica	MD13G1115500.v1.1 MD16G1115400.v1.1
prunus_persica	Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1 Prupe.1G231700_v2.0.a1
pyrus_communis	pycom13g10000 pycom16g09790
rosa_chinensis	RchiOBHm_Chr4g0430881
rosa_laevigata	RLG00000006942
rosa_multiflora	Rmu_sc0006263.1_g000008 Rmu_sc0030097.1_g000001 Rmu_sc0030098.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372570
rosa_rugosa	Rorug04G0246700 Rorug04G0246800 Rorug04G0246900 Rorug04G0247000
rosa_samantha	Rh4AG302500 Rh4AG303400 Rh4BG310600 Rh4CG327000 Rh4DG306800
rosa_wichuraiana	Rw4G026290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	121, 359
Acc36I	ACCTGC	2 cut(s)	121, 359
AccB1I	GGYRCC	1 cut(s)	199
AccB7I	CCANNNNNTGG	1 cut(s)	188
AccIII	TCCGGA	1 cut(s)	262
AciI	CCGC	2 cut(s)	360, 374
AcoI	YGGCCR	1 cut(s)	357
AcyI	GRCGYC	1 cut(s)	314
AfiI	CCNNNNNNNGG	2 cut(s)	27, 188
AgsI	TTSAA	1 cut(s)	87
AluBI	AGCT	4 cut(s)	170, 215, 380, 401
AluI	AGCT	4 cut(s)	170, 215, 380, 401
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	2 cut(s)	67, 397
Aor13HI	TCCGGA	1 cut(s)	262
AoxI	GGCC	3 cut(s)	18, 51, 357
ApeKI	GCWGC	2 cut(s)	377, 398
AspS9I	GGNCC	2 cut(s)	191, 284
AsuHPI	GGTGA	2 cut(s)	57, 102
AvaII	GGWCC	2 cut(s)	191, 284
BanI	GGYRCC	1 cut(s)	199
Bbv12I	GWGCWC	1 cut(s)	45
BbvCI	CCTCAGC	1 cut(s)	319
BbvI	GCAGC	1 cut(s)	389
BccI	CCATC	2 cut(s)	145, 190
BcoDI	GTCTC	2 cut(s)	67, 397
BfmI	CTRYAG	2 cut(s)	330, 396
BfuAI	ACCTGC	2 cut(s)	121, 359
BisI	GCNGC	4 cut(s)	360, 375, 378, 399
BlsI	GCNGC	4 cut(s)	361, 376, 379, 400
Bme18I	GGWCC	2 cut(s)	191, 284
BmgT120I	GGNCC	2 cut(s)	191, 284
BmiI	GGNNCC	2 cut(s)	32, 201
BmsI	GCATC	1 cut(s)	101
BpmI	CTGGAG	2 cut(s)	144, 195
Bpu10I	CCTNAGC	1 cut(s)	319
BsaAI	YACGTR	1 cut(s)	385
BsaHI	GRCGYC	1 cut(s)	314
BsaI	GGTCTC	2 cut(s)	67, 397
BsaJI	CCNNGG	1 cut(s)	148
BsaWI	WCCGGW	1 cut(s)	262
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 188
Bse118I	RCCGGY	1 cut(s)	310
BseAI	TCCGGA	1 cut(s)	262
BseDI	CCNNGG	1 cut(s)	148
BseGI	GGATG	2 cut(s)	133, 271
BseLI	CCNNNNNNNGG	2 cut(s)	27, 188
BseMII	CTCAG	1 cut(s)	333
BseRI	GAGGAG	1 cut(s)	120
BseXI	GCAGC	1 cut(s)	389
BshFI	GGCC	3 cut(s)	20, 53, 359
BshNI	GGYRCC	1 cut(s)	199
BsiHKAI	GWGCWC	1 cut(s)	45
BsiSI	CCGG	2 cut(s)	263, 311
BslI	CCNNNNNNNGG	2 cut(s)	27, 188
BsmAI	GTCTC	2 cut(s)	67, 397
BsnI	GGCC	3 cut(s)	20, 53, 359
Bso31I	GGTCTC	2 cut(s)	67, 397
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp13I	TCCGGA	1 cut(s)	262
BspACI	CCGC	2 cut(s)	360, 374
BspANI	GGCC	3 cut(s)	20, 53, 359
BspCNI	CTCAG	1 cut(s)	332
BspEI	TCCGGA	1 cut(s)	262
BspLI	GGNNCC	2 cut(s)	32, 201
BspMAI	CTGCAG	1 cut(s)	400
BspMI	ACCTGC	2 cut(s)	121, 359
BspT107I	GGYRCC	1 cut(s)	199
BspTNI	GGTCTC	2 cut(s)	67, 397
BsrFI	RCCGGY	1 cut(s)	310
BssAI	RCCGGY	1 cut(s)	310
BssECI	CCNNGG	1 cut(s)	148
BssNI	GRCGYC	1 cut(s)	314
BssT1I	CCWWGG	1 cut(s)	148
BstACI	GRCGYC	1 cut(s)	314
BstBAI	YACGTR	1 cut(s)	385
BstC8I	GCNNGC	1 cut(s)	312
BstDEI	CTNAG	2 cut(s)	319, 405
BstF5I	GGATG	2 cut(s)	133, 271
BstMAI	GTCTC	2 cut(s)	67, 397
BstMWI	GCNNNNNNNGC	4 cut(s)	113, 320, 365, 374
BstSFI	CTRYAG	2 cut(s)	330, 396
BstSNI	TACGTA	1 cut(s)	385
BstV1I	GCAGC	1 cut(s)	389
BsuRI	GGCC	3 cut(s)	20, 53, 359
BtsCI	GGATG	2 cut(s)	133, 271
BveI	ACCTGC	2 cut(s)	121, 359
Cac8I	GCNNGC	1 cut(s)	312
Cfr10I	RCCGGY	1 cut(s)	310
Cfr13I	GGNCC	2 cut(s)	191, 284
CseI	GACGC	1 cut(s)	303
CviAII	CATG	1 cut(s)	58
DdeI	CTNAG	2 cut(s)	319, 405
DraI	TTTAAA	1 cut(s)	351
EaeI	YGGCCR	1 cut(s)	357
Eco105I	TACGTA	1 cut(s)	385
Eco130I	CCWWGG	1 cut(s)	148
Eco31I	GGTCTC	2 cut(s)	67, 397
Eco47I	GGWCC	2 cut(s)	191, 284
EcoT14I	CCWWGG	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	148
FaeI	CATG	1 cut(s)	61
FaiI	YATR	6 cut(s)	36, 38, 50, 59, 167, 227
FatI	CATG	1 cut(s)	57
Fnu4HI	GCNGC	4 cut(s)	360, 375, 378, 399
FokI	GGATG	2 cut(s)	120, 278
Fsp4HI	GCNGC	4 cut(s)	360, 375, 378, 399
GluI	GCNGC	4 cut(s)	360, 375, 378, 399
GsuI	CTGGAG	2 cut(s)	144, 195
HaeIII	GGCC	3 cut(s)	20, 53, 359
HapII	CCGG	2 cut(s)	263, 311
HgaI	GACGC	1 cut(s)	303
Hin1I	GRCGYC	1 cut(s)	314
Hin1II	CATG	1 cut(s)	61
HinfI	GANTC	2 cut(s)	259, 269
HpaII	CCGG	2 cut(s)	263, 311
HphI	GGTGA	2 cut(s)	57, 102
Hpy166II	GTNNAC	1 cut(s)	123
Hpy188I	TCNGA	2 cut(s)	258, 284
Hpy188III	TCNNGA	2 cut(s)	161, 263
Hpy8I	GTNNAC	1 cut(s)	123
HpyAV	CCTTC	3 cut(s)	64, 249, 297
HpyCH4IV	ACGT	1 cut(s)	384
HpyCH4V	TGCA	4 cut(s)	116, 296, 368, 398
HpyF10VI	GCNNNNNNNGC	4 cut(s)	113, 320, 365, 374
HpyF3I	CTNAG	2 cut(s)	319, 405
HpySE526I	ACGT	1 cut(s)	384
Hsp92I	GRCGYC	1 cut(s)	314
Hsp92II	CATG	1 cut(s)	61
Kpn2I	TCCGGA	1 cut(s)	262
KroI	GCCGGC	1 cut(s)	310
KroNI	GCCGGC	1 cut(s)	312
LmnI	GCTCC	1 cut(s)	175
LpnPI	CCDG	8 cut(s)	126, 174, 174, 207, 225, 276, 324, 354
Lsp1109I	GCAGC	1 cut(s)	389
LweI	GCATC	1 cut(s)	101
MaeII	ACGT	1 cut(s)	384
MboII	GAAGA	2 cut(s)	132, 282
MhlI	GDGCHC	1 cut(s)	45
MnlI	CCTC	7 cut(s)	31, 78, 118, 141, 168, 264, 328
MroI	TCCGGA	1 cut(s)	262
MroNI	GCCGGC	1 cut(s)	310
MseI	TTAA	1 cut(s)	350
MslI	CAYNNNNRTG	1 cut(s)	14
MspA1I	CMGCKG	1 cut(s)	215
MspI	CCGG	2 cut(s)	263, 311
MwoI	GCNNNNNNNGC	4 cut(s)	113, 320, 365, 374
NaeI	GCCGGC	1 cut(s)	312
NgoMIV	GCCGGC	1 cut(s)	310
NlaIII	CATG	1 cut(s)	61
NlaIV	GGNNCC	2 cut(s)	32, 201
PaqCI	CACCTGC	2 cut(s)	121, 359
PdiI	GCCGGC	1 cut(s)	312
PfeI	GAWTC	2 cut(s)	259, 269
PflMI	CCANNNNNTGG	1 cut(s)	188
PkrI	GCNGC	4 cut(s)	361, 376, 379, 400
Ppu21I	YACGTR	1 cut(s)	385
PspN4I	GGNNCC	2 cut(s)	32, 201
PspPI	GGNCC	2 cut(s)	191, 284
PstI	CTGCAG	1 cut(s)	400
PvuII	CAGCTG	1 cut(s)	215
RseI	CAYNNNNRTG	1 cut(s)	14
SaqAI	TTAA	1 cut(s)	350
SatI	GCNGC	4 cut(s)	360, 375, 378, 399
Sau96I	GGNCC	2 cut(s)	191, 284
SduI	GDGCHC	1 cut(s)	45
SfaNI	GCATC	1 cut(s)	101
SfcI	CTRYAG	2 cut(s)	330, 396
SinI	GGWCC	2 cut(s)	191, 284
SmiMI	CAYNNNNRTG	1 cut(s)	14
SnaBI	TACGTA	1 cut(s)	385
SsiI	CCGC	2 cut(s)	360, 374
StyI	CCWWGG	1 cut(s)	148
TaiI	ACGT	1 cut(s)	387
TauI	GCSGC	2 cut(s)	362, 377
TfiI	GAWTC	2 cut(s)	259, 269
Tru1I	TTAA	1 cut(s)	350
Tru9I	TTAA	1 cut(s)	350
TseI	GCWGC	2 cut(s)	377, 398
TspDTI	ATGAA	2 cut(s)	46, 282
Van91I	CCANNNNNTGG	1 cut(s)	188
VpaK11BI	GGWCC	2 cut(s)	191, 284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.