Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006314.1

Orthogroup ID

OG0010770

Physical Location & Seq

Genomic Coordinates Forward (+)

74942 .. 76594

Gene Structure 1653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

atgtcgcatattgctcctgatctggcttcgacacctccaactcctttgattcaacagggtcagtgggcgaatttacctccggagttgctttcggacataatagagagggtagaagagagtgagacatcgtggcctgctcggtctgccgttgtcttttgtgcttcagtttgcaagtcatggagggatattacgagggagattgtcaaaactcctgaagaatgcggaaggctcacatttcctatctcattgaagcagcccgggcctcgtgagtctccaatgcagtgcttcatcaaaaggaatagagcgacttccacattttatctgtactttggtctggtgcctgctgagggcgcgagagataaattactgttagcagccaaaaggatcagaagggcaacaagcacagagtttgttatatctttggtcgcagatgatttctctcgagctagcagtacatatgttggtaaactgaggtccaacttcttgggcaccaagtttaccatatatgatagccagccgacatgtgatgcagtagaccagccaaatagtcgatcatctcgaaggtttaattctaagcaggtatctccaagagttccagcgtgtaactacaatgttgggactgtctcttatgagctcaatatcctccgcacaagaggcccaagaagaatgcagtgtgctatgcactctattcctgtctcttctattcaggagggaggcaccgccccgacaccaacattgttcccacaagtctatgatgaacagttttctccctcacctagtttaaaagacaaggagctagtcacagatttcaactctacaccctctacaccctttttgcagtcaccactatccaacccgggtgcagaacctctgattttgaaaaacaagtctcctaggtggcatgagcagctacaatgctggtgccttaacttcagagggcgtgttactgtggcttccgtcaaaaatttccagcttgccgcagctgttgatccatcccacaatgtttccgctgaacagcaagatagggtaatcctgcagtttggaaagattggaaaagacatcttcaccatggattaccgctacccgctgtcctgtttccaggcattcgcaatctgcttaagcacctttgacaccaaaccagcctgtgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006355 GO:0008150 GO:0008289 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0035091 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Tub

Protein Analysis

383

Amino Acids

42.83

Weight (kDa)

8.88

Isoelectric Point (pI)

65.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tub	PF01167	83 - 378	5.6e-102	Tub family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18280 AT2G18280
fragaria_vesca	FvH4_1g13070
malus_domestica	MD02G1145300.v1.1 MD14G1114200.v1.1 MD15G1259500.v1.1
prunus_persica	Prupe.7G156400_v2.0.a1
pyrus_communis	pycom02g11500 pycom15g22700
rosa_chinensis	RchiOBHm_Chr2g0101241
rosa_laevigata	RLG00000017064
rosa_multiflora	Rmu_sc0006314.1_g000016
rosa_roxburghii	Rroxscaffold_2G00141470
rosa_rugosa	Rorug02G0099900 Rorug02G0100000
rosa_samantha	Rh2AG145400 Rh2BG150800 Rh2CG151200 Rh2DG150900
rosa_wichuraiana	Rw2G011340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	568
AccB1I	GGYRCC	4 cut(s)	337, 488, 716, 921
AccI	GTMKAC	1 cut(s)	534
AccII	CGCG	1 cut(s)	353
AccIII	TCCGGA	1 cut(s)	79
AciI	CCGC	7 cut(s)	222, 646, 720, 978, 1008, 1078, 1085
AclWI	GGATC	2 cut(s)	392, 983
AcsI	RAATTY	2 cut(s)	70, 964
AcuI	CTGAAG	3 cut(s)	147, 234, 916
AfaI	GTAC	2 cut(s)	326, 454
AfiI	CCNNNNNNNGG	1 cut(s)	347
AflII	CTTAAG	1 cut(s)	1117
AflIII	ACRYGT	1 cut(s)	521
AgsI	TTSAA	4 cut(s)	53, 250, 811, 880
AjnI	CCWGG	1 cut(s)	1098
AluBI	AGCT	6 cut(s)	446, 634, 796, 910, 973, 983
AluI	AGCT	6 cut(s)	446, 634, 796, 910, 973, 983
Alw21I	GWGCWC	1 cut(s)	636
Alw26I	GTCTC	5 cut(s)	116, 276, 628, 700, 894
AlwI	GGATC	2 cut(s)	392, 983
Ama87I	CYCGRG	3 cut(s)	257, 441, 856
Aor13HI	TCCGGA	1 cut(s)	79
AoxI	GGCC	3 cut(s)	131, 260, 655
ApeKI	GCWGC	4 cut(s)	253, 374, 907, 980
ApoI	RAATTY	2 cut(s)	70, 964
AspA2I	CCTAGG	1 cut(s)	893
AspLEI	GCGC	1 cut(s)	353
AspS9I	GGNCC	3 cut(s)	260, 474, 656
AsuC2I	CCSGG	4 cut(s)	258, 259, 857, 858
AsuHPI	GGTGA	3 cut(s)	765, 834, 1057
AsuNHI	GCTAGC	1 cut(s)	446
AvaI	CYCGRG	3 cut(s)	257, 441, 856
AvaII	GGWCC	1 cut(s)	474
AvrII	CCTAGG	1 cut(s)	893
BaeGI	GKGCMC	1 cut(s)	491
BanI	GGYRCC	4 cut(s)	337, 488, 716, 921
BanII	GRGCYC	1 cut(s)	636
BauI	CACGAG	1 cut(s)	264
Bbv12I	GWGCWC	1 cut(s)	636
BbvCI	CCTCAGC	1 cut(s)	345
BbvI	GCAGC	4 cut(s)	265, 386, 919, 992
BccI	CCATC	1 cut(s)	1000
BceAI	ACGGC	1 cut(s)	131
BciT130I	CCWGG	1 cut(s)	1100
BcnI	CCSGG	4 cut(s)	258, 259, 857, 858
BcoDI	GTCTC	5 cut(s)	116, 276, 628, 700, 894
BfaI	CTAG	4 cut(s)	447, 777, 797, 894
BfmI	CTRYAG	1 cut(s)	1034
BfrI	CTTAAG	1 cut(s)	1117
BfuAI	ACCTGC	1 cut(s)	568
BisI	GCNGC	5 cut(s)	254, 375, 908, 978, 981
BlnI	CCTAGG	1 cut(s)	893
BlsI	GCNGC	5 cut(s)	255, 376, 909, 979, 982
Bme1390I	CCNGG	5 cut(s)	258, 259, 857, 858, 1100
Bme18I	GGWCC	1 cut(s)	474
BmeT110I	CYCGRG	3 cut(s)	257, 441, 856
BmgT120I	GGNCC	3 cut(s)	260, 474, 656
BmiI	GGNNCC	4 cut(s)	339, 490, 718, 923
BmrFI	CCNGG	5 cut(s)	258, 259, 857, 858, 1100
BmsI	GCATC	1 cut(s)	517
BmtI	GCTAGC	1 cut(s)	450
Bpu10I	CCTNAGC	1 cut(s)	345
BpuMI	CCSGG	4 cut(s)	258, 259, 857, 858
BsaJI	CCNNGG	4 cut(s)	257, 856, 893, 1068
BsaWI	WCCGGW	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	1 cut(s)	347
BseAI	TCCGGA	1 cut(s)	79
BseBI	CCWGG	1 cut(s)	1100
BseDI	CCNNGG	4 cut(s)	257, 856, 893, 1068
BseGI	GGATG	1 cut(s)	992
BseLI	CCNNNNNNNGG	1 cut(s)	347
BseMII	CTCAG	2 cut(s)	336, 461
BseSI	GKGCMC	1 cut(s)	491
BseXI	GCAGC	4 cut(s)	265, 386, 919, 992
BsgI	GTGCAG	1 cut(s)	882
Bsh1236I	CGCG	1 cut(s)	353
BshFI	GGCC	3 cut(s)	133, 262, 657
BshNI	GGYRCC	4 cut(s)	337, 488, 716, 921
BsiHKAI	GWGCWC	1 cut(s)	636
BsiHKCI	CYCGRG	3 cut(s)	257, 441, 856
BsiSI	CCGG	3 cut(s)	80, 258, 857
BslFI	GGGAC	1 cut(s)	631
BslI	CCNNNNNNNGG	1 cut(s)	347
BsmAI	GTCTC	5 cut(s)	116, 276, 628, 700, 894
BsmFI	GGGAC	1 cut(s)	631
BsmI	GAATGC	3 cut(s)	224, 672, 1103
BsnI	GGCC	3 cut(s)	133, 262, 657
BsoBI	CYCGRG	3 cut(s)	257, 441, 856
Bsp1286I	GDGCHC	2 cut(s)	491, 636
Bsp13I	TCCGGA	1 cut(s)	79
Bsp143I	GATC	4 cut(s)	19, 384, 551, 988
Bsp19I	CCATGG	1 cut(s)	1068
BspACI	CCGC	7 cut(s)	222, 646, 720, 978, 1008, 1078, 1085
BspANI	GGCC	3 cut(s)	133, 262, 657
BspCNI	CTCAG	2 cut(s)	337, 462
BspEI	TCCGGA	1 cut(s)	79
BspFNI	CGCG	1 cut(s)	353
BspLI	GGNNCC	4 cut(s)	339, 490, 718, 923
BspMAI	CTGCAG	1 cut(s)	1038
BspMI	ACCTGC	1 cut(s)	568
BspOI	GCTAGC	1 cut(s)	450
BspPI	GGATC	2 cut(s)	392, 983
BspT107I	GGYRCC	4 cut(s)	337, 488, 716, 921
BspTI	CTTAAG	1 cut(s)	1117
BssECI	CCNNGG	4 cut(s)	257, 856, 893, 1068
BssMI	GATC	4 cut(s)	19, 384, 551, 988
BssSI	CACGAG	1 cut(s)	264
BssT1I	CCWWGG	2 cut(s)	893, 1068
Bst2BI	CACGAG	1 cut(s)	264
Bst2UI	CCWGG	1 cut(s)	1100
Bst4CI	ACNGT	4 cut(s)	369, 622, 762, 949
Bst6I	CTCTTC	2 cut(s)	108, 703
BstAFI	CTTAAG	1 cut(s)	1117
BstC8I	GCNNGC	5 cut(s)	135, 342, 448, 515, 975
BstDEI	CTNAG	3 cut(s)	345, 470, 573
BstDSI	CCRYGG	1 cut(s)	1068
BstF5I	GGATG	1 cut(s)	992
BstFNI	CGCG	1 cut(s)	353
BstHHI	GCGC	1 cut(s)	353
BstKTI	GATC	4 cut(s)	22, 387, 554, 991
BstMAI	GTCTC	5 cut(s)	116, 276, 628, 700, 894
BstMBI	GATC	4 cut(s)	19, 384, 551, 988
BstMWI	GCNNNNNNNGC	5 cut(s)	143, 259, 350, 654, 907
BstNI	CCWGG	1 cut(s)	1100
BstNSI	RCATGY	1 cut(s)	525
BstSCI	CCNGG	5 cut(s)	256, 257, 855, 856, 1098
BstSFI	CTRYAG	1 cut(s)	1034
BstSLI	GKGCMC	1 cut(s)	491
BstUI	CGCG	1 cut(s)	353
BstV1I	GCAGC	4 cut(s)	265, 386, 919, 992
BstXI	CCANNNNNNTGG	1 cut(s)	484
BsuRI	GGCC	3 cut(s)	133, 262, 657
BtgI	CCRYGG	1 cut(s)	1068
BtsCI	GGATG	1 cut(s)	992
BtsI	GCAGTG	2 cut(s)	287, 677
BtsIMutI	CAGTG	3 cut(s)	68, 287, 677
BveI	ACCTGC	1 cut(s)	568
Cac8I	GCNNGC	5 cut(s)	135, 342, 448, 515, 975
CfoI	GCGC	1 cut(s)	353
Cfr13I	GGNCC	3 cut(s)	260, 474, 656
Cfr9I	CCCGGG	2 cut(s)	257, 856
Csp6I	GTAC	2 cut(s)	325, 453
CviAII	CATG	4 cut(s)	177, 522, 902, 1069
CviQI	GTAC	2 cut(s)	325, 453
DdeI	CTNAG	3 cut(s)	345, 470, 573
DpnI	GATC	4 cut(s)	21, 386, 553, 990
DpnII	GATC	4 cut(s)	19, 384, 551, 988
DraI	TTTAAA	1 cut(s)	783
Eam1104I	CTCTTC	2 cut(s)	108, 703
EarI	CTCTTC	2 cut(s)	108, 703
Ecl136II	GAGCTC	1 cut(s)	634
Eco130I	CCWWGG	2 cut(s)	893, 1068
Eco24I	GRGCYC	1 cut(s)	636
Eco47I	GGWCC	1 cut(s)	474
Eco53kI	GAGCTC	1 cut(s)	634
Eco57I	CTGAAG	3 cut(s)	147, 234, 916
Eco88I	CYCGRG	3 cut(s)	257, 441, 856
EcoICRI	GAGCTC	1 cut(s)	634
EcoRII	CCWGG	1 cut(s)	1098
EcoT14I	CCWWGG	2 cut(s)	893, 1068
EcoT38I	GRGCYC	1 cut(s)	636
ErhI	CCWWGG	2 cut(s)	893, 1068
FaeI	CATG	4 cut(s)	180, 525, 905, 1072
FaqI	GGGAC	1 cut(s)	631
FatI	CATG	4 cut(s)	176, 521, 901, 1068
FauI	CCCGC	1 cut(s)	1092
FauNDI	CATATG	1 cut(s)	457
FblI	GTMKAC	1 cut(s)	534
Fnu4HI	GCNGC	5 cut(s)	254, 375, 908, 978, 981
FokI	GGATG	1 cut(s)	979
FriOI	GRGCYC	1 cut(s)	636
Fsp4HI	GCNGC	5 cut(s)	254, 375, 908, 978, 981
FspBI	CTAG	4 cut(s)	447, 777, 797, 894
GlaI	GCGC	1 cut(s)	352
GluI	GCNGC	5 cut(s)	254, 375, 908, 978, 981
HaeIII	GGCC	3 cut(s)	133, 262, 657
HapII	CCGG	3 cut(s)	80, 258, 857
HhaI	GCGC	1 cut(s)	353
Hin1II	CATG	4 cut(s)	180, 525, 905, 1072
Hin6I	GCGC	1 cut(s)	351
HinP1I	GCGC	1 cut(s)	351
HinfI	GANTC	2 cut(s)	49, 269
HpaII	CCGG	3 cut(s)	80, 258, 857
HphI	GGTGA	3 cut(s)	765, 834, 1057
Hpy166II	GTNNAC	3 cut(s)	467, 498, 535
Hpy188I	TCNGA	4 cut(s)	94, 389, 873, 935
Hpy188III	TCNNGA	7 cut(s)	17, 80, 212, 266, 441, 558, 707
Hpy8I	GTNNAC	3 cut(s)	467, 498, 535
HpyAV	CCTTC	3 cut(s)	219, 384, 555
HpyCH4III	ACNGT	4 cut(s)	369, 622, 762, 949
HpyCH4V	TGCA	8 cut(s)	171, 280, 530, 670, 682, 838, 863, 1036
HpyF10VI	GCNNNNNNNGC	5 cut(s)	143, 259, 350, 654, 907
HpyF3I	CTNAG	3 cut(s)	345, 470, 573
Hsp92II	CATG	4 cut(s)	180, 525, 905, 1072
HspAI	GCGC	1 cut(s)	351
Kpn2I	TCCGGA	1 cut(s)	79
Kzo9I	GATC	4 cut(s)	19, 384, 551, 988
LmnI	GCTCC	2 cut(s)	19, 793
Lsp1109I	GCAGC	4 cut(s)	265, 386, 919, 992
LweI	GCATC	1 cut(s)	517
MaeI	CTAG	4 cut(s)	447, 777, 797, 894
MaeIII	GTNAC	4 cut(s)	602, 799, 840, 943
MalI	GATC	4 cut(s)	21, 386, 553, 990
MboI	GATC	4 cut(s)	19, 384, 551, 988
MboII	GAAGA	5 cut(s)	125, 227, 675, 690, 1054
MhlI	GDGCHC	2 cut(s)	491, 636
MluCI	AATT	4 cut(s)	70, 362, 568, 964
MlyI	GAGTC	1 cut(s)	278
MmeI	TCCRAC	3 cut(s)	62, 501, 876
MroI	TCCGGA	1 cut(s)	79
MseI	TTAA	4 cut(s)	567, 782, 927, 1118
MspA1I	CMGCKG	3 cut(s)	983, 1010, 1087
MspCI	CTTAAG	1 cut(s)	1117
MspI	CCGG	3 cut(s)	80, 258, 857
MspR9I	CCNGG	5 cut(s)	258, 259, 857, 858, 1100
Mva1269I	GAATGC	3 cut(s)	224, 672, 1103
MvaI	CCWGG	1 cut(s)	1100
MvnI	CGCG	1 cut(s)	353
MwoI	GCNNNNNNNGC	5 cut(s)	143, 259, 350, 654, 907
NciI	CCSGG	4 cut(s)	258, 259, 857, 858
NcoI	CCATGG	1 cut(s)	1068
NdeI	CATATG	1 cut(s)	457
NdeII	GATC	4 cut(s)	19, 384, 551, 988
NheI	GCTAGC	1 cut(s)	446
NlaIII	CATG	4 cut(s)	180, 525, 905, 1072
NlaIV	GGNNCC	4 cut(s)	339, 490, 718, 923
NmuCI	GTSAC	2 cut(s)	799, 840
NspI	RCATGY	1 cut(s)	525
PaeR7I	CTCGAG	1 cut(s)	441
PciI	ACATGT	1 cut(s)	521
PcsI	WCGNNNNNNNCGW	1 cut(s)	556
PctI	GAATGC	3 cut(s)	224, 672, 1103
PfeI	GAWTC	1 cut(s)	49
PkrI	GCNGC	5 cut(s)	255, 376, 909, 979, 982
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
PscI	ACATGT	1 cut(s)	521
Psp124BI	GAGCTC	1 cut(s)	636
Psp6I	CCWGG	1 cut(s)	1098
PspGI	CCWGG	1 cut(s)	1098
PspN4I	GGNNCC	4 cut(s)	339, 490, 718, 923
PspPI	GGNCC	3 cut(s)	260, 474, 656
PstI	CTGCAG	1 cut(s)	1038
PvuII	CAGCTG	1 cut(s)	983
RsaI	GTAC	2 cut(s)	326, 454
RsaNI	GTAC	2 cut(s)	325, 453
SacI	GAGCTC	1 cut(s)	636
SaqAI	TTAA	4 cut(s)	567, 782, 927, 1118
SatI	GCNGC	5 cut(s)	254, 375, 908, 978, 981
Sau3AI	GATC	4 cut(s)	19, 384, 551, 988
Sau96I	GGNCC	3 cut(s)	260, 474, 656
SchI	GAGTC	1 cut(s)	278
ScrFI	CCNGG	5 cut(s)	258, 259, 857, 858, 1100
SduI	GDGCHC	2 cut(s)	491, 636
SfaNI	GCATC	1 cut(s)	517
SfcI	CTRYAG	1 cut(s)	1034
Sfr274I	CTCGAG	1 cut(s)	441
SinI	GGWCC	1 cut(s)	474
SlaI	CTCGAG	1 cut(s)	441
SmaI	CCCGGG	2 cut(s)	259, 858
SmlI	CTYRAG	2 cut(s)	441, 1117
SmoI	CTYRAG	2 cut(s)	441, 1117
SrfI	GCCCGGGC	1 cut(s)	259
Sse9I	AATT	4 cut(s)	70, 362, 568, 964
SsiI	CCGC	7 cut(s)	222, 646, 720, 978, 1008, 1078, 1085
SspMI	CTAG	4 cut(s)	447, 777, 797, 894
SstI	GAGCTC	1 cut(s)	636
StyD4I	CCNGG	5 cut(s)	256, 257, 855, 856, 1098
StyI	CCWWGG	2 cut(s)	893, 1068
TaaI	ACNGT	4 cut(s)	369, 622, 762, 949
TaqI	TCGA	4 cut(s)	29, 442, 550, 559
TaqII	GACCGA	1 cut(s)	129
TasI	AATT	4 cut(s)	70, 362, 568, 964
TatI	WGTACW	2 cut(s)	324, 452
TauI	GCSGC	1 cut(s)	980
TfiI	GAWTC	1 cut(s)	49
Tru1I	TTAA	4 cut(s)	567, 782, 927, 1118
Tru9I	TTAA	4 cut(s)	567, 782, 927, 1118
TscAI	CASTG	3 cut(s)	68, 287, 677
TseFI	GTSAC	2 cut(s)	799, 840
TseI	GCWGC	4 cut(s)	253, 374, 907, 980
Tsp45I	GTSAC	2 cut(s)	799, 840
TspDTI	ATGAA	2 cut(s)	277, 771
TspGWI	ACGGA	1 cut(s)	946
TspMI	CCCGGG	2 cut(s)	257, 856
TspRI	CASTG	3 cut(s)	68, 287, 677
Vha464I	CTTAAG	1 cut(s)	1117
VpaK11BI	GGWCC	1 cut(s)	474
XapI	RAATTY	2 cut(s)	70, 964
XceI	RCATGY	1 cut(s)	525
XhoI	CTCGAG	1 cut(s)	441
XmaI	CCCGGG	2 cut(s)	257, 856
XmaJI	CCTAGG	1 cut(s)	893
XmiI	GTMKAC	1 cut(s)	534
XspI	CTAG	4 cut(s)	447, 777, 797, 894

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.