Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006577.1

Orthogroup ID

OG0010475

Physical Location & Seq

Genomic Coordinates Reverse (-)

41083 .. 43773

Gene Structure 2691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1884 bp

atgaaaccaaaaggacgagcttatcactcctttgagtccaatcctcatcttaacctaaacatcatactgaaacgccagcattacagaaaccaggccatcggcccagtaagaaactggttttgctcccagccgaaatcaaactccaagaaaatgtcttcagacgacgaaaaaaccccagtcaaggccatatcagtgaaggatagtgagaagaagaagaagaagcacagagagaaagacaatgatgtggaccaagactacatgatcaagccccagagctcgactccctccctggacacatctcagtggcccattcttctcaagaactatgaccgcctcaatgttcgaactggacattacacacctcttccctcggggtactccccgctcaagcggcctcttgcagagtatatcagatatggtgttctcaatcttgacaagcccgcaaacccctcttcccacgaggttgttgcttggattaaacgcatccttcgtgttgagaagactggtcacagcggtactcttgatcctaaggttacaggtaatctcattgtctgtattgaccgggcaacacgacttgtcaagtctcagcaaggtgcaggaaaagagtatgtctgtgttgcacgcctgcattcagctgtgcctgatgttgccaaggtggcccgggcacttgaatccctcactggtgctgtctttcagaggccacctttgatatctgcagtcaagaggcagcttaggattaggaccatctatgaaagcaagcttcttgagtatgatgcggagaagcatctggttgttttctggatttcctgtgaggcaggtacctatgtgcgaacactgtgtgtgcatttgggtctgctgcttggtgtgggagggcatatgcaggagcttaggagggtcaggtctgggactatgggtgagaaagagaacatggttaccatgcatgatgtcatggatgctcaatgggcttatgatactaatagggatgagagttatttgaggagggttattatgccacttgaggtgcttctgacaagtcataagagattagttgtcaaggactcagcagtgaatgccatttgctatggtgccaagttgatgattcctgggctgctgaggtttgaaaatgaaattgaggtaggagaggaagttgtgctaatgactaccaaaggtgaagcgattgctttgggaattgctgagatgaccactgctgtgatggcaacttgtgatcatggtgtggtggcaaagattaagagggtggtgatggatagggatacttatcctaggaagtggggattggggccaagggcatccatgaagaagaaattgattgcagaagggaaattggataagcatgggaagcctactgagagtactcctccagaatggggccggaatttggttttaccgacaggtggagattctgttattgcaagtgctgctgctgagcttgctgctgcacctgctgttgccactgagacaacttctgtttcagagaagaaggagaagaaaaaacgcaaacaagaggaaataactgacagtcctgttccagttcctgcaaagaaaagcaaaggtgaagaagtagctgaggttgaagttgagaagacagaaaagaagaagaaaaagaaaaaggataaagacaatggagttttggattcttcagatggggagaagtctgtgaaggttaagaagcacaaagataaagaagaagccggttcgcctgcaactgaaaagtctgaaaagaagaaaaagaagaaaaacaaagagtctgaggatcatggtgctgatgctgtcactgataatgggaagggtgatggtgaggctgataagagtgagaaaaagaagaagaagaagaaaaaggataaatcggatgccgacgaagaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000495 GO:0001522 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005732 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009506 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016556 GO:0016853 GO:0016866 GO:0022613 GO:0030054 GO:0031118 GO:0031120 GO:0031123 GO:0031126 GO:0031429 GO:0031974 GO:0031981 GO:0032991 GO:0033979 GO:0034470 GO:0034641 GO:0034660 GO:0034964 GO:0040031 GO:0042254 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0072588 GO:0090304 GO:1901360 GO:1902494 GO:1990481 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

DKCLD PUA TruB_C_2 TruB_N

Protein Analysis

627

Amino Acids

69.95

Weight (kDa)

9.48

Isoelectric Point (pI)

39.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DKCLD	PF08068	99 - 156	5.7e-31	DKCLD (NUC011) domain
TruB_N	PF01509	160 - 276	1.1e-20	TruB family pseudouridylate synthase (N terminal domain)
TruB_C_2	PF16198	277 - 343	1.2e-26	tRNA pseudouridylate synthase B C-terminal domain
PUA	PF01472	347 - 420	1.6e-23	PUA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57150
fragaria_vesca	FvH4_5g20900 FvH4_5g20900 FvH4_5g20900
malus_domestica	MD06G1043100.v1.1 MD16G1267700.v1.1 MD16G1267900.v1.1
prunus_persica	Prupe.1G572500_v2.0.a1 Prupe.5G050000_v2.0.a1
pyrus_communis	pycom06g03610 pycom16g23720
rosa_chinensis	RchiOBHm_Chr7g0207911
rosa_laevigata	RLG00000003276
rosa_multiflora	Rmu_sc0006577.1_g000004
rosa_roxburghii	Rroxscaffold_3G00251050
rosa_rugosa	Rorug07G0100200
rosa_samantha	Rh7AG233600 Rh7BG229200 Rh7CG248900 Rh7DG239600
rosa_wichuraiana	Rw0G001290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1468
Acc36I	ACCTGC	2 cut(s)	806, 1468
Acc65I	GGTACC	1 cut(s)	818
AccB1I	GGYRCC	2 cut(s)	818, 1085
AccBSI	CCGCTC	1 cut(s)	385
AciI	CCGC	6 cut(s)	331, 383, 391, 441, 513, 776
AclWI	GGATC	2 cut(s)	518, 1779
AcsI	RAATTY	1 cut(s)	1393
AcuI	CTGAAG	2 cut(s)	141, 1641
AdeI	CACNNNGTG	1 cut(s)	839
AfaI	GTAC	4 cut(s)	377, 517, 820, 1372
AfiI	CCNNNNNNNGG	4 cut(s)	181, 1385, 1396, 1412
AgsI	TTSAA	3 cut(s)	671, 1121, 1592
AjnI	CCWGG	3 cut(s)	90, 288, 1102
AjuI	GAANNNNNNNTTGG	2 cut(s)	1277, 1309
AleI	CACNNNNGTG	1 cut(s)	1208
AluBI	AGCT	8 cut(s)	20, 276, 635, 730, 760, 886, 1447, 1583
AluI	AGCT	8 cut(s)	20, 276, 635, 730, 760, 886, 1447, 1583
Alw21I	GWGCWC	1 cut(s)	278
Alw26I	GTCTC	2 cut(s)	588, 1469
AlwI	GGATC	2 cut(s)	518, 1779
AlwNI	CAGNNNCTG	1 cut(s)	1553
Ama87I	CYCGRG	2 cut(s)	370, 660
AoxI	GGCC	9 cut(s)	93, 100, 183, 305, 392, 657, 698, 1298, 1387
ApeKI	GCWGC	7 cut(s)	727, 856, 1108, 1436, 1439, 1451, 1454
ApoI	RAATTY	1 cut(s)	1393
Asp718I	GGTACC	1 cut(s)	818
AspA2I	CCTAGG	1 cut(s)	1280
AspS9I	GGNCC	7 cut(s)	101, 247, 306, 658, 741, 1298, 1387
AsuC2I	CCSGG	3 cut(s)	563, 661, 662
AsuHPI	GGTGA	6 cut(s)	926, 1181, 1270, 1583, 1820, 1826
AsuII	TTCGAA	1 cut(s)	343
AvaI	CYCGRG	2 cut(s)	370, 660
AvaII	GGWCC	2 cut(s)	247, 741
AvrII	CCTAGG	1 cut(s)	1280
AxyI	CCTNAGG	1 cut(s)	528
BaeGI	GKGCMC	1 cut(s)	667
BaeI	ACNNNNGTAYC	2 cut(s)	810, 843
BanI	GGYRCC	2 cut(s)	818, 1085
BanII	GRGCYC	1 cut(s)	278
BauI	CACGAG	1 cut(s)	458
BbsI	GAAGAC	3 cut(s)	147, 506, 1607
Bbv12I	GWGCWC	1 cut(s)	278
BbvCI	CCTCAGC	2 cut(s)	1112, 1584
BbvI	GCAGC	7 cut(s)	739, 843, 1095, 1423, 1426, 1438, 1441
BccI	CCATC	6 cut(s)	104, 752, 1207, 1255, 1655, 1805
BcgI	CGANNNNNNTGC	2 cut(s)	449, 483
BciT130I	CCWGG	3 cut(s)	92, 290, 1104
BciVI	GTATCC	1 cut(s)	1264
BclI	TGATCA	2 cut(s)	261, 1225
BcnI	CCSGG	3 cut(s)	563, 661, 662
BcoDI	GTCTC	2 cut(s)	588, 1469
BfaI	CTAG	1 cut(s)	1281
BfmI	CTRYAG	1 cut(s)	714
BfuAI	ACCTGC	2 cut(s)	806, 1468
BfuI	GTATCC	1 cut(s)	1264
BglI	GCCNNNNNGGC	1 cut(s)	656
BisI	GCNGC	8 cut(s)	392, 728, 857, 1109, 1437, 1440, 1452, 1455
BlnI	CCTAGG	1 cut(s)	1280
BlpI	GCTNAGC	1 cut(s)	1443
BlsI	GCNGC	8 cut(s)	393, 729, 858, 1110, 1438, 1441, 1453, 1456
BmcAI	AGTACT	1 cut(s)	1372
Bme1390I	CCNGG	6 cut(s)	92, 290, 563, 661, 662, 1104
Bme18I	GGWCC	2 cut(s)	247, 741
BmeT110I	CYCGRG	2 cut(s)	370, 660
BmgT120I	GGNCC	7 cut(s)	101, 247, 306, 658, 741, 1298, 1387
BmiI	GGNNCC	4 cut(s)	820, 1087, 1299, 1388
BmrFI	CCNGG	6 cut(s)	92, 290, 563, 661, 662, 1104
BmrI	ACTGGG	2 cut(s)	98, 170
BmsI	GCATC	7 cut(s)	492, 763, 793, 943, 1316, 1774, 1858
BmuI	ACTGGG	2 cut(s)	98, 170
BpiI	GAAGAC	3 cut(s)	147, 506, 1607
BplI	GAGNNNNNCTC	4 cut(s)	265, 297, 1360, 1392
BpmI	CTGGAG	1 cut(s)	1362
Bpu10I	CCTNAGC	4 cut(s)	731, 887, 1112, 1584
Bpu1102I	GCTNAGC	1 cut(s)	1443
Bpu14I	TTCGAA	1 cut(s)	343
BpuEI	CTTGAG	4 cut(s)	302, 371, 785, 1037
BpuMI	CCSGG	3 cut(s)	563, 661, 662
BsaBI	GATNNNNATC	1 cut(s)	1275
BsaJI	CCNNGG	7 cut(s)	288, 369, 651, 660, 1103, 1280, 1301
BsaXI	ACNNNNNCTCC	4 cut(s)	1131, 1161, 1407, 1437
Bsc4I	CCNNNNNNNGG	4 cut(s)	181, 1385, 1396, 1412
Bse118I	RCCGGY	1 cut(s)	1709
Bse1I	ACTGG	7 cut(s)	104, 119, 176, 352, 508, 685, 1547
Bse21I	CCTNAGG	1 cut(s)	528
Bse8I	GATNNNNATC	1 cut(s)	1275
BseBI	CCWGG	3 cut(s)	92, 290, 1104
BseDI	CCNNGG	7 cut(s)	288, 369, 651, 660, 1103, 1280, 1301
BseGI	GGATG	5 cut(s)	483, 958, 988, 1307, 1873
BseJI	GATNNNNATC	1 cut(s)	1275
BseLI	CCNNNNNNNGG	4 cut(s)	181, 1385, 1396, 1412
BseNI	ACTGG	7 cut(s)	104, 119, 176, 352, 508, 685, 1547
BseRI	GAGGAG	2 cut(s)	1012, 1365
BseSI	GKGCMC	1 cut(s)	667
BseXI	GCAGC	7 cut(s)	739, 843, 1095, 1423, 1426, 1438, 1441
BseYI	CCCAGC	1 cut(s)	126
BsgI	GTGCAG	2 cut(s)	615, 1440
BshFI	GGCC	9 cut(s)	95, 102, 185, 307, 394, 659, 700, 1300, 1389
BshNI	GGYRCC	2 cut(s)	818, 1085
BsiHKAI	GWGCWC	1 cut(s)	278
BsiHKCI	CYCGRG	2 cut(s)	370, 660
BsiSI	CCGG	4 cut(s)	562, 661, 1390, 1710
BslFI	GGGAC	1 cut(s)	919
BslI	CCNNNNNNNGG	4 cut(s)	181, 1385, 1396, 1412
BsmAI	GTCTC	2 cut(s)	588, 1469
BsmFI	GGGAC	1 cut(s)	919
BsmI	GAATGC	2 cut(s)	628, 1075
BsnI	GGCC	9 cut(s)	95, 102, 185, 307, 394, 659, 700, 1300, 1389
BsoBI	CYCGRG	2 cut(s)	370, 660
Bsp119I	TTCGAA	1 cut(s)	343
Bsp1286I	GDGCHC	2 cut(s)	278, 667
Bsp143I	GATC	4 cut(s)	261, 523, 1225, 1771
Bsp1720I	GCTNAGC	1 cut(s)	1443
BspACI	CCGC	6 cut(s)	331, 383, 391, 441, 513, 776
BspANI	GGCC	9 cut(s)	95, 102, 185, 307, 394, 659, 700, 1300, 1389
BspLI	GGNNCC	4 cut(s)	820, 1087, 1299, 1388
BspMAI	CTGCAG	1 cut(s)	718
BspMI	ACCTGC	2 cut(s)	806, 1468
BspPI	GGATC	2 cut(s)	518, 1779
BspT104I	TTCGAA	1 cut(s)	343
BspT107I	GGYRCC	2 cut(s)	818, 1085
BsrBI	CCGCTC	1 cut(s)	385
BsrFI	RCCGGY	1 cut(s)	1709
BsrI	ACTGG	7 cut(s)	104, 119, 176, 352, 508, 685, 1547
BssAI	RCCGGY	1 cut(s)	1709
BssECI	CCNNGG	7 cut(s)	288, 369, 651, 660, 1103, 1280, 1301
BssMI	GATC	4 cut(s)	261, 523, 1225, 1771
BssSI	CACGAG	1 cut(s)	458
BssT1I	CCWWGG	3 cut(s)	651, 1280, 1301
Bst2BI	CACGAG	1 cut(s)	458
Bst2UI	CCWGG	3 cut(s)	92, 290, 1104
Bst4CI	ACNGT	2 cut(s)	837, 1538
Bst6I	CTCTTC	2 cut(s)	369, 457
BstAPI	GCANNNNNTGC	2 cut(s)	1070, 1436
BstBI	TTCGAA	1 cut(s)	343
BstC8I	GCNNGC	7 cut(s)	77, 441, 622, 626, 758, 1449, 1719
BstEII	GGTNACC	1 cut(s)	931
BstF5I	GGATG	5 cut(s)	483, 958, 988, 1307, 1873
BstKTI	GATC	4 cut(s)	264, 526, 1228, 1774
BstMAI	GTCTC	2 cut(s)	588, 1469
BstMBI	GATC	4 cut(s)	261, 523, 1225, 1771
BstMWI	GCNNNNNNNGC	9 cut(s)	391, 656, 962, 1070, 1214, 1357, 1436, 1448, 1460
BstNI	CCWGG	3 cut(s)	92, 290, 1104
BstPI	GGTNACC	1 cut(s)	931
BstSCI	CCNGG	6 cut(s)	90, 288, 561, 659, 660, 1102
BstSFI	CTRYAG	1 cut(s)	714
BstSLI	GKGCMC	1 cut(s)	667
BstV1I	GCAGC	7 cut(s)	739, 843, 1095, 1423, 1426, 1438, 1441
BstV2I	GAAGAC	3 cut(s)	147, 506, 1607
Bsu36I	CCTNAGG	1 cut(s)	528
BsuI	GTATCC	1 cut(s)	1264
BsuRI	GGCC	9 cut(s)	95, 102, 185, 307, 394, 659, 700, 1300, 1389
BtsCI	GGATG	5 cut(s)	483, 958, 988, 1307, 1873
BtsI	GCAGTG	2 cut(s)	1071, 1203
BtsIMutI	CAGTG	8 cut(s)	198, 308, 678, 833, 1071, 1203, 1470, 1791
BveI	ACCTGC	2 cut(s)	806, 1468
Cac8I	GCNNGC	7 cut(s)	77, 441, 622, 626, 758, 1449, 1719
CaiI	CAGNNNCTG	1 cut(s)	1553
Cfr10I	RCCGGY	1 cut(s)	1709
Cfr13I	GGNCC	7 cut(s)	101, 247, 306, 658, 741, 1298, 1387
Cfr9I	CCCGGG	1 cut(s)	660
Csp6I	GTAC	4 cut(s)	376, 516, 819, 1371
CviAII	CATG	9 cut(s)	259, 928, 937, 941, 949, 1229, 1312, 1352, 1775
CviQI	GTAC	4 cut(s)	376, 516, 819, 1371
DpnI	GATC	4 cut(s)	263, 525, 1227, 1773
DpnII	GATC	4 cut(s)	261, 523, 1225, 1771
DraIII	CACNNNGTG	1 cut(s)	839
Eam1104I	CTCTTC	2 cut(s)	369, 457
EarI	CTCTTC	2 cut(s)	369, 457
Ecl136II	GAGCTC	1 cut(s)	276
Eco130I	CCWWGG	3 cut(s)	651, 1280, 1301
Eco24I	GRGCYC	1 cut(s)	278
Eco32I	GATATC	1 cut(s)	711
Eco47I	GGWCC	2 cut(s)	247, 741
Eco53kI	GAGCTC	1 cut(s)	276
Eco57I	CTGAAG	2 cut(s)	141, 1641
Eco81I	CCTNAGG	1 cut(s)	528
Eco88I	CYCGRG	2 cut(s)	370, 660
Eco91I	GGTNACC	1 cut(s)	931
EcoICRI	GAGCTC	1 cut(s)	276
EcoO65I	GGTNACC	1 cut(s)	931
EcoRII	CCWGG	3 cut(s)	90, 288, 1102
EcoRV	GATATC	1 cut(s)	711
EcoT14I	CCWWGG	3 cut(s)	651, 1280, 1301
EcoT22I	ATGCAT	1 cut(s)	942
EcoT38I	GRGCYC	1 cut(s)	278
ErhI	CCWWGG	3 cut(s)	651, 1280, 1301
FaeI	CATG	9 cut(s)	262, 931, 940, 944, 952, 1232, 1315, 1355, 1778
FaqI	GGGAC	1 cut(s)	919
FatI	CATG	9 cut(s)	258, 927, 936, 940, 948, 1228, 1311, 1351, 1774
FauI	CCCGC	2 cut(s)	390, 448
FauNDI	CATATG	1 cut(s)	876
FbaI	TGATCA	2 cut(s)	261, 1225
Fnu4HI	GCNGC	8 cut(s)	392, 728, 857, 1109, 1437, 1440, 1452, 1455
FokI	GGATG	5 cut(s)	470, 965, 995, 1294, 1880
FriOI	GRGCYC	1 cut(s)	278
Fsp4HI	GCNGC	8 cut(s)	392, 728, 857, 1109, 1437, 1440, 1452, 1455
FspBI	CTAG	1 cut(s)	1281
GluI	GCNGC	8 cut(s)	392, 728, 857, 1109, 1437, 1440, 1452, 1455
GsaI	CCCAGC	1 cut(s)	130
GsuI	CTGGAG	1 cut(s)	1362
HaeIII	GGCC	9 cut(s)	95, 102, 185, 307, 394, 659, 700, 1300, 1389
HapII	CCGG	4 cut(s)	562, 661, 1390, 1710
Hin1II	CATG	9 cut(s)	262, 931, 940, 944, 952, 1232, 1315, 1355, 1778
HindIII	AAGCTT	1 cut(s)	758
HinfI	GANTC	8 cut(s)	35, 280, 671, 1058, 1099, 1418, 1652, 1763
HpaII	CCGG	4 cut(s)	562, 661, 1390, 1710
HphI	GGTGA	6 cut(s)	926, 1181, 1270, 1583, 1820, 1826
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	9 cut(s)	160, 413, 696, 1029, 1492, 1660, 1735, 1768, 1867
Hpy188III	TCNNGA	7 cut(s)	319, 431, 521, 721, 764, 799, 1379
Hpy8I	GTNNAC	1 cut(s)	247
Hpy99I	CGWCG	2 cut(s)	167, 1877
HpyAV	CCTTC	6 cut(s)	190, 497, 1328, 1492, 1672, 1798
HpyCH4III	ACNGT	2 cut(s)	837, 1538
HpyF10VI	GCNNNNNNNGC	9 cut(s)	391, 656, 962, 1070, 1214, 1357, 1436, 1448, 1460
Hsp92II	CATG	9 cut(s)	262, 931, 940, 944, 952, 1232, 1315, 1355, 1778
KpnI	GGTACC	1 cut(s)	822
Ksp22I	TGATCA	2 cut(s)	261, 1225
Kzo9I	GATC	4 cut(s)	261, 523, 1225, 1771
LmnI	GCTCC	2 cut(s)	128, 883
Lsp1109I	GCAGC	7 cut(s)	739, 843, 1095, 1423, 1426, 1438, 1441
LweI	GCATC	7 cut(s)	492, 763, 793, 943, 1316, 1774, 1858
MaeI	CTAG	1 cut(s)	1281
MaeIII	GTNAC	4 cut(s)	506, 532, 931, 1789
MalI	GATC	4 cut(s)	263, 525, 1227, 1773
MbiI	CCGCTC	1 cut(s)	385
MboI	GATC	4 cut(s)	261, 523, 1225, 1771
MhlI	GDGCHC	2 cut(s)	278, 667
MluCI	AATT	5 cut(s)	1128, 1188, 1322, 1340, 1393
MlyI	GAGTC	4 cut(s)	44, 274, 1052, 1772
Mph1103I	ATGCAT	1 cut(s)	942
MseI	TTAA	4 cut(s)	51, 477, 1248, 1683
MslI	CAYNNNNRTG	3 cut(s)	191, 301, 1208
MspA1I	CMGCKG	2 cut(s)	513, 635
MspI	CCGG	4 cut(s)	562, 661, 1390, 1710
MspR9I	CCNGG	6 cut(s)	92, 290, 563, 661, 662, 1104
Mva1269I	GAATGC	2 cut(s)	628, 1075
MvaI	CCWGG	3 cut(s)	92, 290, 1104
MwoI	GCNNNNNNNGC	9 cut(s)	391, 656, 962, 1070, 1214, 1357, 1436, 1448, 1460
NciI	CCSGG	3 cut(s)	563, 661, 662
NdeI	CATATG	1 cut(s)	876
NdeII	GATC	4 cut(s)	261, 523, 1225, 1771
NlaIII	CATG	9 cut(s)	262, 931, 940, 944, 952, 1232, 1315, 1355, 1778
NlaIV	GGNNCC	4 cut(s)	820, 1087, 1299, 1388
NmuCI	GTSAC	2 cut(s)	506, 1789
NsiI	ATGCAT	1 cut(s)	942
NspV	TTCGAA	1 cut(s)	343
OliI	CACNNNNGTG	1 cut(s)	1208
PaqCI	CACCTGC	1 cut(s)	1468
PcsI	WCGNNNNNNNCGW	1 cut(s)	487
PctI	GAATGC	2 cut(s)	628, 1075
PfeI	GAWTC	4 cut(s)	671, 1099, 1418, 1652
PkrI	GCNGC	8 cut(s)	393, 729, 858, 1110, 1438, 1441, 1453, 1456
PleI	GAGTC	4 cut(s)	43, 274, 1052, 1771
PpsI	GAGTC	4 cut(s)	43, 274, 1052, 1771
Psp124BI	GAGCTC	1 cut(s)	278
Psp6I	CCWGG	3 cut(s)	90, 288, 1102
PspEI	GGTNACC	1 cut(s)	931
PspFI	CCCAGC	1 cut(s)	126
PspGI	CCWGG	3 cut(s)	90, 288, 1102
PspN4I	GGNNCC	4 cut(s)	820, 1087, 1299, 1388
PspPI	GGNCC	7 cut(s)	101, 247, 306, 658, 741, 1298, 1387
PstI	CTGCAG	1 cut(s)	718
PstNI	CAGNNNCTG	1 cut(s)	1553
PvuII	CAGCTG	1 cut(s)	635
RsaI	GTAC	4 cut(s)	377, 517, 820, 1372
RsaNI	GTAC	4 cut(s)	376, 516, 819, 1371
RseI	CAYNNNNRTG	3 cut(s)	191, 301, 1208
SacI	GAGCTC	1 cut(s)	278
SaqAI	TTAA	4 cut(s)	51, 477, 1248, 1683
SatI	GCNGC	8 cut(s)	392, 728, 857, 1109, 1437, 1440, 1452, 1455
Sau3AI	GATC	4 cut(s)	261, 523, 1225, 1771
Sau96I	GGNCC	7 cut(s)	101, 247, 306, 658, 741, 1298, 1387
ScaI	AGTACT	1 cut(s)	1372
SchI	GAGTC	4 cut(s)	44, 274, 1052, 1772
ScrFI	CCNGG	6 cut(s)	92, 290, 563, 661, 662, 1104
SduI	GDGCHC	2 cut(s)	278, 667
SfaNI	GCATC	7 cut(s)	492, 763, 793, 943, 1316, 1774, 1858
SfcI	CTRYAG	1 cut(s)	714
SfuI	TTCGAA	1 cut(s)	343
SinI	GGWCC	2 cut(s)	247, 741
SmaI	CCCGGG	1 cut(s)	662
SmiMI	CAYNNNNRTG	3 cut(s)	191, 301, 1208
SmlI	CTYRAG	4 cut(s)	317, 386, 764, 1016
SmoI	CTYRAG	4 cut(s)	317, 386, 764, 1016
SrfI	GCCCGGGC	1 cut(s)	662
Sse9I	AATT	5 cut(s)	1128, 1188, 1322, 1340, 1393
SsiI	CCGC	6 cut(s)	331, 383, 391, 441, 513, 776
SspMI	CTAG	1 cut(s)	1281
SstI	GAGCTC	1 cut(s)	278
StyD4I	CCNGG	6 cut(s)	90, 288, 561, 659, 660, 1102
StyI	CCWWGG	3 cut(s)	651, 1280, 1301
TaaI	ACNGT	2 cut(s)	837, 1538
TaqI	TCGA	2 cut(s)	278, 343
TasI	AATT	5 cut(s)	1128, 1188, 1322, 1340, 1393
TatI	WGTACW	1 cut(s)	1370
TauI	GCSGC	1 cut(s)	394
TfiI	GAWTC	4 cut(s)	671, 1099, 1418, 1652
Tru1I	TTAA	4 cut(s)	51, 477, 1248, 1683
Tru9I	TTAA	4 cut(s)	51, 477, 1248, 1683
TscAI	CASTG	8 cut(s)	198, 308, 685, 840, 1071, 1210, 1477, 1798
TseFI	GTSAC	2 cut(s)	506, 1789
TseI	GCWGC	7 cut(s)	727, 856, 1108, 1436, 1439, 1451, 1454
Tsp45I	GTSAC	2 cut(s)	506, 1789
TspDTI	ATGAA	4 cut(s)	17, 765, 1140, 1328
TspMI	CCCGGG	1 cut(s)	660
TspRI	CASTG	8 cut(s)	198, 308, 685, 840, 1071, 1210, 1477, 1798
VpaK11BI	GGWCC	2 cut(s)	247, 741
XapI	RAATTY	1 cut(s)	1393
XcmI	CCANNNNNNNNNTGG	2 cut(s)	111, 1210
XmaI	CCCGGG	1 cut(s)	660
XmaJI	CCTAGG	1 cut(s)	1280
XspI	CTAG	1 cut(s)	1281
ZrmI	AGTACT	1 cut(s)	1372
Zsp2I	ATGCAT	1 cut(s)	942

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.